Ss1.1-Tes1-TES01B010004.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTGGAGGTGGTTGCGGCGCAGGTCTCAACAAGCTCCGGGGGAGCCAGAACCCCGGTGG CCTTTGGGACGAGGCGGGTAGGGGTCTCGGGCCTCTCCGCTCCTGTGCCGGTGCCCAGCC GGGCCTCGCGGCCGCCTCCTCGCAACCGCTCCCCCGTGCAGTCCCGCGCGGGCCCGCTGT AACTGCGCGCCGGGCCGGACGATGCCCAAGAAGCTGCTGCTGCTGCCCCCGCTCTCCGTG TCCTCCGCTTTCCGCGCCCCGCGAGCCTGCCCTGCCTCCCGCCCGGCCATGAACGCCGCC CGCACCGGCTACCGAGTCTTCTCGGCCAACTCCACGGCCGCCTGCACCGAGCTGGCCAAG CGCATCACCGAGCGTCTTGGTGCTGAACTGGGAAAGTCTGTGGTTTATCAAGAGACCAAT GGAGAAACAAGAGTTGAAATAAAAGAATCTGTTCGTGGCCAAGATATTTTCATTATACAG ACGATCCCCAGAGACGTGAACACGGCCGTGATGGAGCTGCTGATCATGGCCTACGCGCTG AAGACGGCCTGTGCCAGGAACATCATCGGCGTCATCCCCTACTTCCCCTACAGCAAGCAG AGCAAGATGCGCAAGCGGGGCTCCATCGTGTGCAAGCTGCTGGCCTCCATGCTGGCGAAA GCCGGTTTAACTCACATTATCACTATGGATCTTCACCAAAAGGAAATCCAAGGCTTTTTC AGCTTTCCTGTGGACAACCTTAGAGCCTCGCCTTTCCTGCTTCAGTACATCCAGGAAGAA ATTCCAAATTACAGAAATGCGGTGATTGTAGCTAAGTCTCCTGATGCTGCAAAAAGGGCC CAGTCGTACGCGGAGAGGCTGCGTCTGGGTTTGGCCGTGATCCACGGGGAAGCGCAGTGC GCGGAGCTGGACATGGACGACGGCCGCCACTCCCCGCCCATGGTCAAGAACGCCACCGTC CACCCCGGGCTGGAGTTGCCGTTGATGATGGCCAAGGAGAAGCCCCCGATCACCGTGGTG GGAGACGTCGGCGGGCGCATCGCCATCATAGTGGACGACATCATTGACGACGTGGAGAGT TTCGTGGCCGCTGCGGAGATCCTGAAAGAGAGAGGCGCGTACAAGATCTACGTCATGGCC ACGCACGGCATCCTGTCCGCGGAGGCCCCGCGCCTGATCGAGGAGTCCTCCATCGACGAG GTGGTGGTGACAAATACTGTCCCTCACGAGGTGCAGAAGCTGCAGTGTCCCAAGATCAAG ACGGTGGACATCAGTCTGATCCTGTCCGAAGCCATTCGCAGAATCCACAACGGCGAGTCC ATGGCCTACCTCTTCCGAAACATCACCGTGGACGACTAGCTCTCCCCGTGGCCTTGACCC TGGAGCTCGAGGAAGCCATGTGCGCGGCAGGGCCGGCGGCTCTGTGCACGGTGTTCCCTT TCGGGGGAGGCGCGTGGTCTCTCTTGCGTTGCCAAGTCCAGTTGGTGGGAGGCGTTCAGC TCGCAGAGCGGGGGACAGCGATGATGCGTGAATGGCCTTCACCGTCCCCGGGGTCATCCT GTTCCTTAAAAGTTAGACATTTCCCCGTAGCGAATCTGAACGTCTCGCTGCTGTGGAAGC GGGCGCGAAAGGCCGACACCGTGCCTCCCTCAGGCTCCCTTAGTTGCTTCCACCACCGGG AACCCGCGTGCTGCTGCTGAACTAGGCTGGGGACGCCGAGCCCCCGGCACTGGTTCTGTT CCACCTGCCCTCTCGCTGGTCACCTCCACGCCCGTCTTTTGAAGAGACTCCTATCTTTCT TTGATGACCCGCTCGCCAGCGGCCATTGAAGGACGAAGCATTTACGGCGCTTCCCCTGGT GAGGACGTCAGGGTAGAGACCCGCACCCCGTGTCCGGGCGTCTGCATTGCTCTTAAGTTG CAAATAAAAGAAAGTTGCTGTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTGGAGGTGGTTGCGGCGCAGGTCTCAACAAGCTCCGGGGGAGCCAGAACCCCGGTGG CCTTTGGGACGAGGCGGGTAGGGGTCTCGGGCCTCTCCGCTCCTGTGCCGGTGCCCAGCC GGGCCTCGCGGCCGCCTCCTCGCAACCGCTCCCCCGTGCAGTCCCGCGCGGGCCCGCTGT AACTGCGCGCCGGGCCGGACGATGCCCAAGAAGCTGCTGCTGCTGCCCCCGCTCTCCGTG TCCTCCGCTTTCCGCGCCCCGCGAGCCTGCCCTGCCTCCCGCCCGGCCATGAACGCCGCC CGCACCGGCTACCGAGTCTTCTCGGCCAACTCCACGGCCGCCTGCACCGAGCTGGCCAAG CGCATCACCGAGCGTCTTGGTGCTGAACTGGGAAAGTCTGTGGTTTATCAAGAGACCAAT GGAGAAACAAGAGTTGAAATAAAAGAATCTGTTCGTGGCCAAGATATTTTCATTATACAG ACGATCCCCAGAGACGTGAACACGGCCGTGATGGAGCTGCTGATCATGGCCTACGCGCTG AAGACGGCCTGTGCCAGGAACATCATCGGCGTCATCCCCTACTTCCCCTACAGCAAGCAG AGCAAGATGCGCAAGCGGGGCTCCATCGTGTGCAAGCTGCTGGCCTCCATGCTGGCGAAA GCCGGTTTAACTCACATTATCACTATGGATCTTCACCAAAAGGAAATCCAAGGCTTTTTC AGCTTTCCTGTGGACAACCTTAGAGCCTCGCCTTTCCTGCTTCAGTACATCCAGGAAGAA ATTCCAAATTACAGAAATGCGGTGATTGTAGCTAAGTCTCCTGATGCTGCAAAAAGGGCC CAGTCGTACGCGGAGAGGCTGCGTCTGGGTTTGGCCGTGATCCACGGGGAAGCGCAGTGC GCGGAGCTGGACATGGACGACGGCCGCCACTCCCCGCCCATGGTCAAGAACGCCACCGTC CACCCCGGGCTGGAGTTGCCGTTGATGATGGCCAAGGAGAAGCCCCCGATCACCGTGGTG GGAGACGTCGGCGGGCGCATCGCCATCATAGTGGACGACATCATTGACGACGTGGAGAGT TTCGTGGCCGCTGCGGAGATCCTGAAAGAGAGAGGCGCGTACAAGATCTACGTCATGGCC ACGCACGGCATCCTGTCCGCGGAGGCCCCGCGCCTGATCGAGGAGTCCTCCATCGACGAG GTGGTGGTGACAAATACTGTCCCTCACGAGGTGCAGAAGCTGCAGTGTCCCAAGATCAAG ACGGTGGACATCAGTCTGATCCTGTCCGAAGCCATTCGCAGAATCCACAACGGCGAGTCC ATGGCCTACCTCTTCCGAAACATCACCGTGGACGACTAGCTCTCCCCGTGGCCTTGACCC TGGAGCTCGAGGAAGCCATGTGCGCGGCAGGGCCGGCGGCTCTGTGCACGGTGTTCCCTT TCGGGGGAGGCGCGTGGTCTCTCTTGCGTTGCCAAGTCCAGTTGGTGGGAGGCGTTCAGC TCGCAGAGCGGGGGACAGCGATGATGCGTGAATGGCCTTCACCGTCCCCGGGGTCATCCT GTTCCTTAAAAGTTAGACATTTCCCCGTAGCGAATCTGAACGTCTCGCTGCTGTGGAAGC GGGCGCGAAAGGCCGACACCGTGCCTCCCTCAGGCTCCCTTAGTTGCTTCCACCACCGGG AACCCGCGTGCTGCTGCTGAACTAGGCTGGGGACGCCGAGCCCCCGGCACTGGTTCTGTT CCACCTGCCCTCTCGCTGGTCACCTCCACGCCCGTCTTTTGAAGAGACTCCTATCTTTCT TTGATGACCCGCTCGCCAGCGGCCATTGAAGGACGAAGCATTTACGGCGCTTCCCCTGGT GAGGACGTCAGGGTAGAGACCCGCACCCCGTGTCCGGGCGTCTGCATTGCTCTTAAGTTG CAAATAAAAGAAAGTTGCTGTCTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 122-372, gnl|bosTau2|chr19 (49315385-49315637) | |
| 122-372, gnl|Hg17|chr17 (71861457-71861209) | |
| 122-372, gnl|Mm7|chr11 (116599319-116599092) | |
| 489-666, gnl|bosTau2|chr19 (49331355-49331532) | |
| 489-666, gnl|Hg17|chr17 (71840114-71839937) | |
| 489-666, gnl|Mm7|chr11 (116588872-116588695) | |
| 835-980, gnl|bosTau2|chr19 (49334478-49334623) | |
| 835-980, gnl|canFam2|chr9 (7360540-7360349) | |
| 835-980, gnl|danRer3|chr3 (38255797-38255970) | |
| 835-980, gnl|dasNov1|scaffold_12471 (50051-50239) | |
| 835-980, gnl|echTel1|scaffold_289453 (43713-43519) | |
| 835-980, gnl|fr1|chrUn (276706729-276706549) | |
| 835-980, gnl|galGal2|chr18 (4277152-4276971) | |
| 835-980, gnl|hg17|chr17 (71836388-71836578) | |
| 835-980, gnl|Hg17|chr17 (71836540-71836395) | |
| 835-980, gnl|loxAfr1|scaffold_9877 (14344-14536) | |
| 835-980, gnl|mm7|chr11 (116586242-116586438) | |
| 835-980, gnl|Mm7|chr11 (116586394-116586249) | |
| 835-980, gnl|monDom2|scaffold_18 (34485333-34485517) | |
| 835-980, gnl|oryCun1|scaffold_204373 (2153-2356) | |
| 835-980, gnl|panTro1|chr19 (75199052-75199242) | |
| 835-980, gnl|rheMac2|chr16 (71678864-71679054) | |
| 835-980, gnl|rn3|chr10 (106602457-106602646) | |
| 835-980, gnl|tetNig1|chrUn_random (39725042-39725199) | |
| 835-980, gnl|xenTro1|scaffold_135 (1937549-1937372) | |
| 1196-1944, gnl|bosTau2|chr19 (49340442-49341187) | |
| 1196-1944, gnl|Hg17|chr17 (71819381-71818607) | |
| 1196-1944, gnl|Mm7|chr11 (116580605-116579903) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 122-372, gnl|bosTau2|chr19 (49315385-49315637) | |
| 122-372, gnl|Hg17|chr17 (71861457-71861209) | |
| 122-372, gnl|Mm7|chr11 (116599319-116599092) | |
| 489-666, gnl|bosTau2|chr19 (49331355-49331532) | |
| 489-666, gnl|Hg17|chr17 (71840114-71839937) | |
| 489-666, gnl|Mm7|chr11 (116588872-116588695) | |
| 835-980, gnl|bosTau2|chr19 (49334478-49334623) | |
| 835-980, gnl|canFam2|chr9 (7360540-7360349) | |
| 835-980, gnl|danRer3|chr3 (38255797-38255970) | |
| 835-980, gnl|dasNov1|scaffold_12471 (50051-50239) | |
| 835-980, gnl|echTel1|scaffold_289453 (43713-43519) | |
| 835-980, gnl|fr1|chrUn (276706729-276706549) | |
| 835-980, gnl|galGal2|chr18 (4277152-4276971) | |
| 835-980, gnl|hg17|chr17 (71836388-71836578) | |
| 835-980, gnl|Hg17|chr17 (71836540-71836395) | |
| 835-980, gnl|loxAfr1|scaffold_9877 (14344-14536) | |
| 835-980, gnl|mm7|chr11 (116586242-116586438) | |
| 835-980, gnl|Mm7|chr11 (116586394-116586249) | |
| 835-980, gnl|monDom2|scaffold_18 (34485333-34485517) | |
| 835-980, gnl|oryCun1|scaffold_204373 (2153-2356) | |
| 835-980, gnl|panTro1|chr19 (75199052-75199242) | |
| 835-980, gnl|rheMac2|chr16 (71678864-71679054) | |
| 835-980, gnl|rn3|chr10 (106602457-106602646) | |
| 835-980, gnl|tetNig1|chrUn_random (39725042-39725199) | |
| 835-980, gnl|xenTro1|scaffold_135 (1937549-1937372) | |
| 1196-1944, gnl|bosTau2|chr19 (49340442-49341187) | |
| 1196-1944, gnl|Hg17|chr17 (71819381-71818607) | |
| 1196-1944, gnl|Mm7|chr11 (116580605-116579903) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cov (0.528611) | |
| amn (0.417711) | |
| elu (0.385356) | |
| pty (0.285429) | |
| mas (0.210305) | |
| mcp (0.170648) | |
| cli (0.152812) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| clu (0.119646) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| amn (0.417711) | |
| elu (0.385356) | |
| pty (0.285429) | |
| mas (0.210305) | |
| mcp (0.170648) | |
| cli (0.152812) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| clu (0.119646) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |