Ss1.1-Tes1-TES01B010010.5
|
TTCCTCTGCTTGGGACCACTCCCCGCCCCGACCTTGGTGCTGTGCCCCGCGGCAATGGCT
GCGGTTGTGGCTGGGATGCTACGAGGGGGTCTCCTGCCCCAGGCGGGTCGGCTGCCCACC
TTCCAGACTGTCCGGTATGGCTCTAAGGCTGTTACCCGCCACCGTCGCGTGATGCACTTT
GAGCGGCAGAAGCTGATGGCTGTGACAGAGTATATCCCCCCCAAACCTACTATCAACCCA
AGATGCCTCCCGCCCCCTCCCACCCCTCCGCAAGAGGAGACAGGCCTCGTCCGGCTCCTC
CGTCGGGAGATAGCAGCCGTTTTCCGAGACAACCGGATGATAGCAGTCTGCCAGCATGTG
GCTCTGAGTGCGGAGGACAAGCTGCTCCTGCGGCACCAGCTGCGGAAGCACAAGATCCTG
ATGAAGATCTTCCCCAACCAGGTCCTAAAGCCCTTCCTGGAAGAGTCCAAGTACCAGAAC
CTGCTGCCCCTCTTTGTGGGGCACAACCTGCTGCTGGTCAGTGAAGAGCCCAAGGTCAAA
GAGATGGTGCGAATCCTGAAGGGCATTCCTTTCCTGCCACTGCTGGGTGGCTGCATTGAT
GACACCATCCTCAGCAGGCAGGGCTTCATCAACTACTCCAAGCTTCCCAGCCTGGCCCTG
GTGCAGGGGGAGCTGGTAGGAGGGCTCACCTTCCTCACAGCCCAGACCTACTCCATGCTG
CAGCACCAGCCCCGCCAGCTCACTGCCCTGCTGGATCAGTACGTCAAACAGCAGCAGGAG
GGGCACCCTGCCGTGCCAGCCAGTGGGCAGCCGGAGCCTCCTGACCCTGTTCCGGACCCG
TAGCCAGCCTCTTGTACCCAGCCTGGCCATAAATACACTCTGCCCCTGTTGGCTGTGCCC
CCCTGTGTTGGAGATGTGGGGAACTGAGGGAGGGGAGTGGCTTTTGTTACCTGGCTTTCG
CTGACAGCAACCACTGCCAGTACAGGGCCGCCTGGAGATGCAGAGGGATTCCGCTTCAGA
ACAGAGGCTCCTCAGCAGCATCTGTGTCCCTAGTTTTCCCCAAATTGGGGCCTGATAGGA
GCGGTCTCTTTCCGCTCTCCAGGTCCAAGATGGAGAAGCTGAATGGCTGAGGATATTGCC
CTTGGCCTCTTTGTTCACTGTCCCTTGTCGCAGGCGTCTCCCAGCCCACCTCCTCAAGGT
TCCAGTGTGCCAGAATAGCTCACCTGAGTAATTCATTGTGCCGAGAACGGCATCTGTTGA
CAAGCCTACTGTGCCAGGCTCCATGTGAACCACTTTACACGTGCTAGGTCCTTGATGTCT
CTCATGTTAGTCCCATTTCACAGAGAGGAAGACTAAGGGGAGAAGTTAAATAGCCTACTC
AAGGTCACGCTGTTAGGAGGAGGCAGCACAGGGACTGAACCAGGCTCTCAGCCCTGGATT
TCTGCTCGAGAGCTTTCTCATTAGGTGTGCTTGGATGTTAATTTTCCAAACGTAAATTTG
GAGTGTGCCATGTTGTGGAAACGTTGGGAGCACTGCCTTACGATAAAGTGAAATGCTTTT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCCTCTGCTTGGGACCACTCCCCGCCCCGACCTTGGTGCTGTGCCCCGCGGCAATGGCT
GCGGTTGTGGCTGGGATGCTACGAGGGGGTCTCCTGCCCCAGGCGGGTCGGCTGCCCACC
TTCCAGACTGTCCGGTATGGCTCTAAGGCTGTTACCCGCCACCGTCGCGTGATGCACTTT
GAGCGGCAGAAGCTGATGGCTGTGACAGAGTATATCCCCCCCAAACCTACTATCAACCCA
AGATGCCTCCCGCCCCCTCCCACCCCTCCGCAAGAGGAGACAGGCCTCGTCCGGCTCCTC
CGTCGGGAGATAGCAGCCGTTTTCCGAGACAACCGGATGATAGCAGTCTGCCAGCATGTG
GCTCTGAGTGCGGAGGACAAGCTGCTCCTGCGGCACCAGCTGCGGAAGCACAAGATCCTG
ATGAAGATCTTCCCCAACCAGGTCCTAAAGCCCTTCCTGGAAGAGTCCAAGTACCAGAAC
CTGCTGCCCCTCTTTGTGGGGCACAACCTGCTGCTGGTCAGTGAAGAGCCCAAGGTCAAA
GAGATGGTGCGAATCCTGAAGGGCATTCCTTTCCTGCCACTGCTGGGTGGCTGCATTGAT
GACACCATCCTCAGCAGGCAGGGCTTCATCAACTACTCCAAGCTTCCCAGCCTGGCCCTG
GTGCAGGGGGAGCTGGTAGGAGGGCTCACCTTCCTCACAGCCCAGACCTACTCCATGCTG
CAGCACCAGCCCCGCCAGCTCACTGCCCTGCTGGATCAGTACGTCAAACAGCAGCAGGAG
GGGCACCCTGCCGTGCCAGCCAGTGGGCAGCCGGAGCCTCCTGACCCTGTTCCGGACCCG
TAGCCAGCCTCTTGTACCCAGCCTGGCCATAAATACACTCTGCCCCTGTTGGCTGTGCCC
CCCTGTGTTGGAGATGTGGGGAACTGAGGGAGGGGAGTGGCTTTTGTTACCTGGCTTTCG
CTGACAGCAACCACTGCCAGTACAGGGCCGCCTGGAGATGCAGAGGGATTCCGCTTCAGA
ACAGAGGCTCCTCAGCAGCATCTGTGTCCCTAGTTTTCCCCAAATTGGGGCCTGATAGGA
GCGGTCTCTTTCCGCTCTCCAGGTCCAAGATGGAGAAGCTGAATGGCTGAGGATATTGCC
CTTGGCCTCTTTGTTCACTGTCCCTTGTCGCAGGCGTCTCCCAGCCCACCTCCTCAAGGT
TCCAGTGTGCCAGAATAGCTCACCTGAGTAATTCATTGTGCCGAGAACGGCATCTGTTGA
CAAGCCTACTGTGCCAGGCTCCATGTGAACCACTTTACACGTGCTAGGTCCTTGATGTCT
CTCATGTTAGTCCCATTTCACAGAGAGGAAGACTAAGGGGAGAAGTTAAATAGCCTACTC
AAGGTCACGCTGTTAGGAGGAGGCAGCACAGGGACTGAACCAGGCTCTCAGCCCTGGATT
TCTGCTCGAGAGCTTTCTCATTAGGTGTGCTTGGATGTTAATTTTCCAAACGTAAATTTG
GAGTGTGCCATGTTGTGGAAACGTTGGGAGCACTGCCTTACGATAAAGTGAAATGCTTTT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
275-443, gnl|bosTau2|chr19 (30693847-30694015) |
|
275-443, gnl|canFam2|chr9 (27486477-27486602) |
|
275-443, gnl|danRer3|chr12 (23530088-23529964) |
|
275-443, gnl|dasNov1|scaffold_2129 (11734-11843) |
|
275-443, gnl|echTel1|scaffold_298985 (13261-13386) |
|
275-443, gnl|fr1|chrUn (226857761-226857886) |
|
275-443, gnl|hg17|chr17 (43259403-43259528) |
|
275-443, gnl|Hg17|chr17 (43259571-43259403) |
|
275-443, gnl|loxAfr1|scaffold_155850 (1114-1239) |
|
275-443, gnl|mm7|chr11 (97156237-97156112) |
|
275-443, gnl|Mm7|chr11 (97156067-97156235) |
|
275-443, gnl|monDom2|scaffold_18 (46672412-46672286) |
|
275-443, gnl|oryCun1|scaffold_203855 (36723-36598) |
|
275-443, gnl|panTro1|chr19_random (42211482-42211607) |
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275-443, gnl|rheMac2|chr16 (32035971-32036096) |
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275-443, gnl|rn3|chr10 (85782509-85782384) |
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275-443, gnl|tetNig1|chr2 (1362593-1362718) |
|
275-443, gnl|xenTro1|scaffold_334 (1298225-1298350) |
| |
|
583-1560, gnl|bosTau2|chr19 (30695294-30696258) |
|
583-1560, gnl|Hg17|chr17 (43256827-43255827) |
|
583-1560, gnl|Mm7|chr11 (97157114-97158018) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
275-443, gnl|bosTau2|chr19 (30693847-30694015) |
|
275-443, gnl|canFam2|chr9 (27486477-27486602) |
|
275-443, gnl|danRer3|chr12 (23530088-23529964) |
|
275-443, gnl|dasNov1|scaffold_2129 (11734-11843) |
|
275-443, gnl|echTel1|scaffold_298985 (13261-13386) |
|
275-443, gnl|fr1|chrUn (226857761-226857886) |
|
275-443, gnl|hg17|chr17 (43259403-43259528) |
|
275-443, gnl|Hg17|chr17 (43259571-43259403) |
|
275-443, gnl|loxAfr1|scaffold_155850 (1114-1239) |
|
275-443, gnl|mm7|chr11 (97156237-97156112) |
|
275-443, gnl|Mm7|chr11 (97156067-97156235) |
|
275-443, gnl|monDom2|scaffold_18 (46672412-46672286) |
|
275-443, gnl|oryCun1|scaffold_203855 (36723-36598) |
|
275-443, gnl|panTro1|chr19_random (42211482-42211607) |
|
275-443, gnl|rheMac2|chr16 (32035971-32036096) |
|
275-443, gnl|rn3|chr10 (85782509-85782384) |
|
275-443, gnl|tetNig1|chr2 (1362593-1362718) |
|
275-443, gnl|xenTro1|scaffold_334 (1298225-1298350) |
| |
|
583-1560, gnl|bosTau2|chr19 (30695294-30696258) |
|
583-1560, gnl|Hg17|chr17 (43256827-43255827) |
|
583-1560, gnl|Mm7|chr11 (97157114-97158018) |
|
clu (0.598229) |
|
cty (0.5204) |
|
cov (0.396458) |
|
cje (0.330469) |
|
cki (0.330469) |
|
nco (0.323468) |
|
che (0.272628) |
|
sto (0.179824) |
|
cut (0.169924) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ebs (0.118301) |
|
cbl (0.114797) |
|
jej (0.0989218) |
|
clu (0.598229) |
|
cty (0.5204) |
|
cov (0.396458) |
|
cje (0.330469) |
|
cki (0.330469) |
|
nco (0.323468) |
|
che (0.272628) |
|
sto (0.179824) |
|
cut (0.169924) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ebs (0.118301) |
|
cbl (0.114797) |
|
jej (0.0989218) |
