Ss1.1-Tes1-TES01B010013.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGCTCCAGTCGGTCGGCTCCCGGCTCCTGGCCCCTCTCTCGCTCAGCTCCGGCTCCCT GGTGGCGGCGGACAAGGGACTGCACCATCCCCCTCTCCCAGCAAGGGGGCTCCAGAGACT GCCCAGCCAGGAAGTCTGGCGGCCTGGGCGCTCGGACAGTCCCTTGGTAATGTCCAGGGC TCCAGGAAGAGATGTCCTTGTGGGTGGAGGCCCCTGTGCCTGATGTTTCTCCTGACTCTG CAGTGGAGCTGTGGGAGTCAGATGCACAAGATGCAAGCAGCCAGTCTCTGGGAAGCAGCA GCTGCATCCTCAGGGAGGAATCCAGCACACCCCAGTCTGCGGGGGGCGCTTCGAGGGTGG GGCTGGATGCAACAGAGTCCACGGCCCTGCTTCCCGGGGTGGAGGCCTCTCCAGAGTCCA CAGAGCTCCGTCCACAAAAGCGGAAAAAGGGGCCAGCCCCCAAAATGCTGGGGAATGAGC TGTGCAGTGTGTGTGGGGACAAGGCCTCCGGCTTCCACTACAACGTGCTGAGCTGCGAGG GCTGCAAGGGATTCTTCCGTCGCAGTGTCATCAAAGGGGCTCGCTATGTCTGCCACAGCG GGGGCCACTGCCCCATGGACACCTACATGCGTCGCAAGTGCCAGGAGTGCCGTCTTCGCA AGTGCCGCCAGGCGGGCATGCGAGAGGAGTGTGTCCTGTCAGAAGAACAGATCCGCCTGA AGAAACTGAAGCGGCAAGAGGAGGAACAGGCTCAGGCCACATCTGTGCCCCCAAGGGCTT CCTCGCCGCCCCAAGTCCTGCCCCAGCTTAGCCCAGAGCAGCTGGGCATGATCGAGAAGC TGGTGGCTGCCCAGCAGCAGTGTAACAGACGCTCCTTTTCAGACCAGCTTAGAGTCACGC CTTGGCCCATGGCACCAGATCCCCAGAGCCGGGAGGCCCGTCAGCAACGCTTTGCCCACT TCACTGAGCTGGCCATCGTCTCTGTGCAGGAGATCGTTGATTTTGCCAAACAGCTGCCAG GCTTCTTGCAGCTCAGCCGGGAGGACCAGATCGCCCTCCTAAAGACCTCTGCGATTGAGG TGATGCTTCTGGAGACATCTCGGAGGTACAACCCTGGGAGTGAGAGTATCACCTTCCTCA AGGATTTCAGTTATAATCGGGAAGACTTTGCCAAAGCAGGGCTGCAGGTGGAGTTCATCA ACCCTATCTTCGAGTTCTCCAGAGCCATGAATGAGCTGCAACTAAATGATGCTGAGTTTG CCCTGCTCATTGCCATCAGCATCTTCTCTGCAGACCGGCCCAACGTGCAGGACCAGCTCC AGGTAGAGAGGCTGCAACATACATATGTGGAGGCCCTGCATGCCTACGTCTCCATCCACC ACCCCCATGACCGACTGATGTTCCCACGGATGCTAATGAAACTGGTGAGCCTCCGGACAC TGAGCAGCGTCCACTCAGAGCAAGTGTTTGCACTGCGCCTGCAGGATAAAAAGCTTCCCC CGCTGCTCTCTGAGATCTGGGATGTGCACGAGTGACTGTTCTTCCCCCACACCGTGTCTT CTGTTTTTTGGGGTAGATGGCTGAGGCGTGACTGAGAAGGGCAGACATTCCTGAGGGCTG GGCAAAGGACATCCTCACGTGGCATTAAAAGAGTCAAAGGGTTGGGAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGCTCCAGTCGGTCGGCTCCCGGCTCCTGGCCCCTCTCTCGCTCAGCTCCGGCTCCCT GGTGGCGGCGGACAAGGGACTGCACCATCCCCCTCTCCCAGCAAGGGGGCTCCAGAGACT GCCCAGCCAGGAAGTCTGGCGGCCTGGGCGCTCGGACAGTCCCTTGGTAATGTCCAGGGC TCCAGGAAGAGATGTCCTTGTGGGTGGAGGCCCCTGTGCCTGATGTTTCTCCTGACTCTG CAGTGGAGCTGTGGGAGTCAGATGCACAAGATGCAAGCAGCCAGTCTCTGGGAAGCAGCA GCTGCATCCTCAGGGAGGAATCCAGCACACCCCAGTCTGCGGGGGGCGCTTCGAGGGTGG GGCTGGATGCAACAGAGTCCACGGCCCTGCTTCCCGGGGTGGAGGCCTCTCCAGAGTCCA CAGAGCTCCGTCCACAAAAGCGGAAAAAGGGGCCAGCCCCCAAAATGCTGGGGAATGAGC TGTGCAGTGTGTGTGGGGACAAGGCCTCCGGCTTCCACTACAACGTGCTGAGCTGCGAGG GCTGCAAGGGATTCTTCCGTCGCAGTGTCATCAAAGGGGCTCGCTATGTCTGCCACAGCG GGGGCCACTGCCCCATGGACACCTACATGCGTCGCAAGTGCCAGGAGTGCCGTCTTCGCA AGTGCCGCCAGGCGGGCATGCGAGAGGAGTGTGTCCTGTCAGAAGAACAGATCCGCCTGA AGAAACTGAAGCGGCAAGAGGAGGAACAGGCTCAGGCCACATCTGTGCCCCCAAGGGCTT CCTCGCCGCCCCAAGTCCTGCCCCAGCTTAGCCCAGAGCAGCTGGGCATGATCGAGAAGC TGGTGGCTGCCCAGCAGCAGTGTAACAGACGCTCCTTTTCAGACCAGCTTAGAGTCACGC CTTGGCCCATGGCACCAGATCCCCAGAGCCGGGAGGCCCGTCAGCAACGCTTTGCCCACT TCACTGAGCTGGCCATCGTCTCTGTGCAGGAGATCGTTGATTTTGCCAAACAGCTGCCAG GCTTCTTGCAGCTCAGCCGGGAGGACCAGATCGCCCTCCTAAAGACCTCTGCGATTGAGG TGATGCTTCTGGAGACATCTCGGAGGTACAACCCTGGGAGTGAGAGTATCACCTTCCTCA AGGATTTCAGTTATAATCGGGAAGACTTTGCCAAAGCAGGGCTGCAGGTGGAGTTCATCA ACCCTATCTTCGAGTTCTCCAGAGCCATGAATGAGCTGCAACTAAATGATGCTGAGTTTG CCCTGCTCATTGCCATCAGCATCTTCTCTGCAGACCGGCCCAACGTGCAGGACCAGCTCC AGGTAGAGAGGCTGCAACATACATATGTGGAGGCCCTGCATGCCTACGTCTCCATCCACC ACCCCCATGACCGACTGATGTTCCCACGGATGCTAATGAAACTGGTGAGCCTCCGGACAC TGAGCAGCGTCCACTCAGAGCAAGTGTTTGCACTGCGCCTGCAGGATAAAAAGCTTCCCC CGCTGCTCTCTGAGATCTGGGATGTGCACGAGTGACTGTTCTTCCCCCACACCGTGTCTT CTGTTTTTTGGGGTAGATGGCTGAGGCGTGACTGAGAAGGGCAGACATTCCTGAGGGCTG GGCAAAGGACATCCTCACGTGGCATTAAAAGAGTCAAAGGGTTGGGAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 2-149, gnl|bosTau2|chr15 (49043814-49043655) | |
| 2-149, gnl|canFam2|chr18 (45374969-45374691) | |
| 2-149, gnl|dasNov1|scaffold_3175 (13651-13929) | |
| 2-149, gnl|echTel1|scaffold_311186 (65469-65771) | |
| 2-149, gnl|hg17|chr11 (47236021-47236294) | |
| 2-149, gnl|Hg17|chr11 (47236026-47236251) | |
| 2-149, gnl|loxAfr1|scaffold_14545 (20426-20704) | |
| 2-149, gnl|mm7|chr2 (91045582-91045338) | |
| 2-149, gnl|Mm7|chr2 (91045575-91045374) | |
| 2-149, gnl|monDom2|scaffold_33 (13130735-13130989) | |
| 2-149, gnl|oryCun1|scaffold_195123 (34911-34617) | |
| 2-149, gnl|panTro1|chr9 (47752532-47752805) | |
| 2-149, gnl|rheMac2|chr14 (24861669-24861397) | |
| 2-149, gnl|rn3|chr3 (75448316-75448072) | |
| 421-693, gnl|bosTau2|chr15 (49041588-49041316) | |
| 421-693, gnl|canFam2|chr18 (45372631-45372344) | |
| 421-693, gnl|danRer3|chrUn (78713298-78713023) | |
| 421-693, gnl|dasNov1|scaffold_3175 (15899-16186) | |
| 421-693, gnl|echTel1|scaffold_311186 (68374-68663) | |
| 421-693, gnl|fr1|chrUn (94933974-94934259) | |
| 421-693, gnl|galGal2|chr5 (20415288-20415002) | |
| 421-693, gnl|hg17|chr11 (47238534-47238821) | |
| 421-693, gnl|Hg17|chr11 (47238533-47238805) | |
| 421-693, gnl|loxAfr1|scaffold_14545 (23263-23550) | |
| 421-693, gnl|mm7|chr2 (91042775-91042488) | |
| 421-693, gnl|Mm7|chr2 (91042774-91042502) | |
| 421-693, gnl|oryCun1|scaffold_200186 (286767-286487) | |
| 421-693, gnl|panTro1|chr9 (47755044-47755331) | |
| 421-693, gnl|rheMac2|chr14 (24859128-24858841) | |
| 421-693, gnl|rn3|chr3 (75445593-75445308) | |
| 421-693, gnl|tetNig1|chr5 (11154159-11154417) | |
| 421-693, gnl|xenTro1|scaffold_98 (2357910-2358197) | |
| 899-1083, gnl|bosTau2|chr15 (49040635-49040451) | |
| 899-1083, gnl|Hg17|chr11 (47239673-47239857) | |
| 899-1083, gnl|Mm7|chr2 (91041358-91041174) | |
| 1177-1293, gnl|bosTau2|chr15 (49037564-49037448) | |
| 1177-1293, gnl|Hg17|chr11 (47246037-47246153) | |
| 1177-1293, gnl|Mm7|chr2 (91035774-91035658) | |
| 1363-1587, gnl|bosTau2|chr15 (49036967-49036748) | |
| 1363-1587, gnl|Hg17|chr11 (47246651-47246870) | |
| 1363-1587, gnl|Mm7|chr2 (91035220-91035011) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-149, gnl|bosTau2|chr15 (49043814-49043655) | |
| 2-149, gnl|canFam2|chr18 (45374969-45374691) | |
| 2-149, gnl|dasNov1|scaffold_3175 (13651-13929) | |
| 2-149, gnl|echTel1|scaffold_311186 (65469-65771) | |
| 2-149, gnl|hg17|chr11 (47236021-47236294) | |
| 2-149, gnl|Hg17|chr11 (47236026-47236251) | |
| 2-149, gnl|loxAfr1|scaffold_14545 (20426-20704) | |
| 2-149, gnl|mm7|chr2 (91045582-91045338) | |
| 2-149, gnl|Mm7|chr2 (91045575-91045374) | |
| 2-149, gnl|monDom2|scaffold_33 (13130735-13130989) | |
| 2-149, gnl|oryCun1|scaffold_195123 (34911-34617) | |
| 2-149, gnl|panTro1|chr9 (47752532-47752805) | |
| 2-149, gnl|rheMac2|chr14 (24861669-24861397) | |
| 2-149, gnl|rn3|chr3 (75448316-75448072) | |
| 421-693, gnl|bosTau2|chr15 (49041588-49041316) | |
| 421-693, gnl|canFam2|chr18 (45372631-45372344) | |
| 421-693, gnl|danRer3|chrUn (78713298-78713023) | |
| 421-693, gnl|dasNov1|scaffold_3175 (15899-16186) | |
| 421-693, gnl|echTel1|scaffold_311186 (68374-68663) | |
| 421-693, gnl|fr1|chrUn (94933974-94934259) | |
| 421-693, gnl|galGal2|chr5 (20415288-20415002) | |
| 421-693, gnl|hg17|chr11 (47238534-47238821) | |
| 421-693, gnl|Hg17|chr11 (47238533-47238805) | |
| 421-693, gnl|loxAfr1|scaffold_14545 (23263-23550) | |
| 421-693, gnl|mm7|chr2 (91042775-91042488) | |
| 421-693, gnl|Mm7|chr2 (91042774-91042502) | |
| 421-693, gnl|oryCun1|scaffold_200186 (286767-286487) | |
| 421-693, gnl|panTro1|chr9 (47755044-47755331) | |
| 421-693, gnl|rheMac2|chr14 (24859128-24858841) | |
| 421-693, gnl|rn3|chr3 (75445593-75445308) | |
| 421-693, gnl|tetNig1|chr5 (11154159-11154417) | |
| 421-693, gnl|xenTro1|scaffold_98 (2357910-2358197) | |
| 899-1083, gnl|bosTau2|chr15 (49040635-49040451) | |
| 899-1083, gnl|Hg17|chr11 (47239673-47239857) | |
| 899-1083, gnl|Mm7|chr2 (91041358-91041174) | |
| 1177-1293, gnl|bosTau2|chr15 (49037564-49037448) | |
| 1177-1293, gnl|Hg17|chr11 (47246037-47246153) | |
| 1177-1293, gnl|Mm7|chr2 (91035774-91035658) | |
| 1363-1587, gnl|bosTau2|chr15 (49036967-49036748) | |
| 1363-1587, gnl|Hg17|chr11 (47246651-47246870) | |
| 1363-1587, gnl|Mm7|chr2 (91035220-91035011) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| lnt (0.426925) | |
| cga (0.279096) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lun (0.150489) | |
| spl (0.143184) | |
| eep (0.122564) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.426925) | |
| cga (0.279096) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lun (0.150489) | |
| spl (0.143184) | |
| eep (0.122564) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |