Ss1.1-Tes1-TES01B010043.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGCTGCGTCTTTATACAAAGGTTATCAACACCGTGGACCGGCCAGCACACTGCTGGGC GCAGGCCCGTCTCGCCACTTCCCGGGGCAGAAGTCTGGGTCGGGGTGGGGGTGGGGGTCG CTGCTGGGGAGGAACACGGCACAGGCCCGGGGACTCCCGCGGGGCACACGGACACGCGGA CACGAACACCCAAGCGCACTATTACAAGGACGGGAGGGAAACAGTCGGCCGCACCTGCCG CCCACGGCCAAGGCCCTCCTGTGCGGGAGCTGCGGGGGCAGCGCCACCACTGAGCCATGC GACCTCGTGTCGTCACAGGGCGCGTCGCTGTCTGCATCTGTGAACTGGGGACGACAAGCT GTACTTCACAGAGCTGTCATGAGGACAAATGAGACTGAAATAGGGACACGGATCAAAAGA CTCAACGCAGAGCCTGCACATCGAGGTGTTTGGTAAAGAACTTTCTGTCGAGAAAATCGG AGCTCAGAGGGGACCTTCCTCAGAAGGCTGAGACGGGAGACCACTTCCCTAGAAACTCTG TCTCAGGGGATCAGGACCCTAGAGCACTCCTTGGAGCCGGCGGCCGCTGGAGTGGCCAGG GCCCCGGAATACACCGTGCCGGGGCAGTTGAGGGGGGCAGGGGGCTGCACCCCCAGGGAG GCACCCGCGGAAGCCGGGTAGACACCGGAGGAGTTAGGGGTTGTGCCAAAATGGTTTTGC ACGTAGCACAGGCCGGAGGCAGGCTGGTATGGAGGCAGGCTGGGCATGTGCCCAGGAGCG CAGGCTGGCCAGGATGCGAGTTTCTGGCCACTGGCATGCTGCATCTGGGCGACAGGGTGG TTCGGGGGCAGGTGAGGGTGGCCGCTCTGTGTGGGGTAGGAGCCGGGCACAGGGTTCAGC CTCCGGCTGTGGGCCGCCCTTCTCTCGGCCGAAGAGCCTGAGATGTACTTGAACAGCGAA ATCCTCCTCATCAGGCTGAAGGGGAACTTCTGGTCGAGCTTCAGGGCCACGTGCTCCGGC AGGTCAAGGGAGTAGCAGTACGTGAGGCCGTACGCCAGCCCAATTCCAAGTCCACAGACG TTGCTGAGGAAAGAGGTCTGGGGAATGAGCCAGGAGGCACAGAGCAGGAGCCACGGCACC AGCATCGAGGGCACCACCATGCCAAACACCAGGGCCCGCCTCATCCGAGCGCGGACGGAG TTGACGCCCAGCATGGCAAAAGCCACCGGGGTGAAGCCTCTGGCGTCCTCCACCTCCCCC AGCTTCGACAGCTTCGACACAGCTTCAAAGGACAGGAAGATGATGGCAGAGCAGAGGGCG AAGATCACGGTGAAGAAGCAGTGGCGGACCGTGCCCACGGTTCTCTCAAAATTGCCAGCA AAGCGCCAGATGATGATAGCGCCGCAGAGCAGGGAGACGGGGTTCTCGTAGACAAAGATG TAGGTCACCAGCCTGTAAACTTGCCAGTTGCGCAGGGCCTCGGACCGCAGCGAGAGGCCC GAGGGCGCCAGGGGCGGCTGCAGCAGGAACAGGCGGGGCCCGGACACCAGCAGCGAGAGC AGCGCGGTGAAGAAGGTGGCGGATGGCACCTCGGGCCACAAGGACCAGCTCCGGTACCCG GGCTCCGAGACCGCCATGGCCGCCAAGGCTCCCGCACCTCTGCGCGGCACACCAGCAGCG AGAGCAGCGCGGTGAAGAAGGTGGCGGATGGCACCTCGGGCCACAAGGACCAGCTCCGGT ACCCGGGCTCCGAGACCGCCATGGCCGCCAAGGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGCTGCGTCTTTATACAAAGGTTATCAACACCGTGGACCGGCCAGCACACTGCTGGGC GCAGGCCCGTCTCGCCACTTCCCGGGGCAGAAGTCTGGGTCGGGGTGGGGGTGGGGGTCG CTGCTGGGGAGGAACACGGCACAGGCCCGGGGACTCCCGCGGGGCACACGGACACGCGGA CACGAACACCCAAGCGCACTATTACAAGGACGGGAGGGAAACAGTCGGCCGCACCTGCCG CCCACGGCCAAGGCCCTCCTGTGCGGGAGCTGCGGGGGCAGCGCCACCACTGAGCCATGC GACCTCGTGTCGTCACAGGGCGCGTCGCTGTCTGCATCTGTGAACTGGGGACGACAAGCT GTACTTCACAGAGCTGTCATGAGGACAAATGAGACTGAAATAGGGACACGGATCAAAAGA CTCAACGCAGAGCCTGCACATCGAGGTGTTTGGTAAAGAACTTTCTGTCGAGAAAATCGG AGCTCAGAGGGGACCTTCCTCAGAAGGCTGAGACGGGAGACCACTTCCCTAGAAACTCTG TCTCAGGGGATCAGGACCCTAGAGCACTCCTTGGAGCCGGCGGCCGCTGGAGTGGCCAGG GCCCCGGAATACACCGTGCCGGGGCAGTTGAGGGGGGCAGGGGGCTGCACCCCCAGGGAG GCACCCGCGGAAGCCGGGTAGACACCGGAGGAGTTAGGGGTTGTGCCAAAATGGTTTTGC ACGTAGCACAGGCCGGAGGCAGGCTGGTATGGAGGCAGGCTGGGCATGTGCCCAGGAGCG CAGGCTGGCCAGGATGCGAGTTTCTGGCCACTGGCATGCTGCATCTGGGCGACAGGGTGG TTCGGGGGCAGGTGAGGGTGGCCGCTCTGTGTGGGGTAGGAGCCGGGCACAGGGTTCAGC CTCCGGCTGTGGGCCGCCCTTCTCTCGGCCGAAGAGCCTGAGATGTACTTGAACAGCGAA ATCCTCCTCATCAGGCTGAAGGGGAACTTCTGGTCGAGCTTCAGGGCCACGTGCTCCGGC AGGTCAAGGGAGTAGCAGTACGTGAGGCCGTACGCCAGCCCAATTCCAAGTCCACAGACG TTGCTGAGGAAAGAGGTCTGGGGAATGAGCCAGGAGGCACAGAGCAGGAGCCACGGCACC AGCATCGAGGGCACCACCATGCCAAACACCAGGGCCCGCCTCATCCGAGCGCGGACGGAG TTGACGCCCAGCATGGCAAAAGCCACCGGGGTGAAGCCTCTGGCGTCCTCCACCTCCCCC AGCTTCGACAGCTTCGACACAGCTTCAAAGGACAGGAAGATGATGGCAGAGCAGAGGGCG AAGATCACGGTGAAGAAGCAGTGGCGGACCGTGCCCACGGTTCTCTCAAAATTGCCAGCA AAGCGCCAGATGATGATAGCGCCGCAGAGCAGGGAGACGGGGTTCTCGTAGACAAAGATG TAGGTCACCAGCCTGTAAACTTGCCAGTTGCGCAGGGCCTCGGACCGCAGCGAGAGGCCC GAGGGCGCCAGGGGCGGCTGCAGCAGGAACAGGCGGGGCCCGGACACCAGCAGCGAGAGC AGCGCGGTGAAGAAGGTGGCGGATGGCACCTCGGGCCACAAGGACCAGCTCCGGTACCCG GGCTCCGAGACCGCCATGGCCGCCAAGGCTCCCGCACCTCTGCGCGGCACACCAGCAGCG AGAGCAGCGCGGTGAAGAAGGTGGCGGATGGCACCTCGGGCCACAAGGACCAGCTCCGGT ACCCGGGCTCCGAGACCGCCATGGCCGCCAAGGCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 717-1252, - strand, RNAz p=0.585383 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 717-1252, - strand, RNAz p=0.585383 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC069017, - |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-174, gnl|bosTau2|chr25 (30426580-30426747) | |
| 1-174, gnl|canFam2|chr6 (10231865-10232180) | |
| 1-174, gnl|echTel1|scaffold_276338 (34726-34378) | |
| 1-174, gnl|hg17|chr7 (75162618-75162989) | |
| 1-174, gnl|Hg17|chr7 (75162887-75162725) | |
| 1-174, gnl|loxAfr1|scaffold_21284 (17696-17326) | |
| 1-174, gnl|mm7|chr5 (134615209-134615480) | |
| 1-174, gnl|oryCun1|scaffold_178443 (8447-8762) | |
| 1-174, gnl|panTro1|chr6 (76255978-76256349) | |
| 1-174, gnl|rheMac2|chr3 (50391589-50391261) | |
| 1-174, gnl|rn3|chr12 (22185261-22184967) | |
| 280-902, gnl|bosTau2|chr25 (30426907-30427523) | |
| 280-902, gnl|Hg17|chr7 (75162565-75161959) | |
| 1054-1461, gnl|bosTau2|chr25 (30431881-30432288) | |
| 1054-1461, gnl|canFam2|chr6 (10222191-10222470) | |
| 1054-1461, gnl|danRer3|chr10 (32660245-32659982) | |
| 1054-1461, gnl|dasNov1|scaffold_40081 (292-7) | |
| 1054-1461, gnl|echTel1|scaffold_276338 (42689-42410) | |
| 1054-1461, gnl|galGal2|chr19 (4072200-4071927) | |
| 1054-1461, gnl|hg17|chr7 (75155777-75156056) | |
| 1054-1461, gnl|Hg17|chr7 (75156203-75155796) | |
| 1054-1461, gnl|loxAfr1|scaffold_21284 (25397-25118) | |
| 1054-1461, gnl|mm7|chr5 (134607254-134607533) | |
| 1054-1461, gnl|Mm7|chr5 (134607680-134607273) | |
| 1054-1461, gnl|monDom2|scaffold_77 (5291109-5290830) | |
| 1054-1461, gnl|oryCun1|scaffold_178443 (1128-1392) | |
| 1054-1461, gnl|panTro1|chr6 (76249154-76249433) | |
| 1054-1461, gnl|rheMac2|chr3 (50398724-50398445) | |
| 1054-1461, gnl|rn3|chr12 (22192209-22191931) | |
| 1054-1461, gnl|xenTro1|scaffold_38 (815490-815232) | |
| 1662-1776, gnl|bosTau2|chr25 (30434465-30434578) | |
| 1662-1776, gnl|canFam2|chr6 (10219887-10220263) | |
| 1662-1776, gnl|echTel1|scaffold_276338 (46125-45756) | |
| 1662-1776, gnl|hg17|chr7 (75152905-75153284) | |
| 1662-1776, gnl|Hg17|chr7 (75153151-75153038) | |
| 1662-1776, gnl|loxAfr1|scaffold_21284 (27517-27141) | |
| 1662-1776, gnl|mm7|chr5 (134603872-134604251) | |
| 1662-1776, gnl|Mm7|chr5 (134604120-134604007) | |
| 1662-1776, gnl|monDom2|scaffold_77 (5292935-5292501) | |
| 1662-1776, gnl|panTro1|chr6 (76246181-76246560) | |
| 1662-1776, gnl|rheMac2|chr3 (50401574-50401195) | |
| 1662-1776, gnl|rn3|chr12 (22195833-22195467) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-174, gnl|bosTau2|chr25 (30426580-30426747) | |
| 1-174, gnl|canFam2|chr6 (10231865-10232180) | |
| 1-174, gnl|echTel1|scaffold_276338 (34726-34378) | |
| 1-174, gnl|hg17|chr7 (75162618-75162989) | |
| 1-174, gnl|Hg17|chr7 (75162887-75162725) | |
| 1-174, gnl|loxAfr1|scaffold_21284 (17696-17326) | |
| 1-174, gnl|mm7|chr5 (134615209-134615480) | |
| 1-174, gnl|oryCun1|scaffold_178443 (8447-8762) | |
| 1-174, gnl|panTro1|chr6 (76255978-76256349) | |
| 1-174, gnl|rheMac2|chr3 (50391589-50391261) | |
| 1-174, gnl|rn3|chr12 (22185261-22184967) | |
| 280-902, gnl|bosTau2|chr25 (30426907-30427523) | |
| 280-902, gnl|Hg17|chr7 (75162565-75161959) | |
| 1054-1461, gnl|bosTau2|chr25 (30431881-30432288) | |
| 1054-1461, gnl|canFam2|chr6 (10222191-10222470) | |
| 1054-1461, gnl|danRer3|chr10 (32660245-32659982) | |
| 1054-1461, gnl|dasNov1|scaffold_40081 (292-7) | |
| 1054-1461, gnl|echTel1|scaffold_276338 (42689-42410) | |
| 1054-1461, gnl|galGal2|chr19 (4072200-4071927) | |
| 1054-1461, gnl|hg17|chr7 (75155777-75156056) | |
| 1054-1461, gnl|Hg17|chr7 (75156203-75155796) | |
| 1054-1461, gnl|loxAfr1|scaffold_21284 (25397-25118) | |
| 1054-1461, gnl|mm7|chr5 (134607254-134607533) | |
| 1054-1461, gnl|Mm7|chr5 (134607680-134607273) | |
| 1054-1461, gnl|monDom2|scaffold_77 (5291109-5290830) | |
| 1054-1461, gnl|oryCun1|scaffold_178443 (1128-1392) | |
| 1054-1461, gnl|panTro1|chr6 (76249154-76249433) | |
| 1054-1461, gnl|rheMac2|chr3 (50398724-50398445) | |
| 1054-1461, gnl|rn3|chr12 (22192209-22191931) | |
| 1054-1461, gnl|xenTro1|scaffold_38 (815490-815232) | |
| 1662-1776, gnl|bosTau2|chr25 (30434465-30434578) | |
| 1662-1776, gnl|canFam2|chr6 (10219887-10220263) | |
| 1662-1776, gnl|echTel1|scaffold_276338 (46125-45756) | |
| 1662-1776, gnl|hg17|chr7 (75152905-75153284) | |
| 1662-1776, gnl|Hg17|chr7 (75153151-75153038) | |
| 1662-1776, gnl|loxAfr1|scaffold_21284 (27517-27141) | |
| 1662-1776, gnl|mm7|chr5 (134603872-134604251) | |
| 1662-1776, gnl|Mm7|chr5 (134604120-134604007) | |
| 1662-1776, gnl|monDom2|scaffold_77 (5292935-5292501) | |
| 1662-1776, gnl|panTro1|chr6 (76246181-76246560) | |
| 1662-1776, gnl|rheMac2|chr3 (50401574-50401195) | |
| 1662-1776, gnl|rn3|chr12 (22195833-22195467) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| amn (0.835422) | |
| ece (0.687916) | |
| cov (0.660764) | |
| fhi (0.508733) | |
| ecc (0.46014) | |
| ebs (0.354904) | |
| fce (0.271592) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| ece (0.687916) | |
| cov (0.660764) | |
| fhi (0.508733) | |
| ecc (0.46014) | |
| ebs (0.354904) | |
| fce (0.271592) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cty (0.10408) | |
| jej (0.0989218) |