Non-Coding RNA Search

Ss1.1-Tes1-TES01B010055.5

Sequence:


               
               GAGAAGGAAAAACCCCAAAGCAGGTCCCTTTGATTGGGTATAAACCGAAGTTGGTGCCTT
CCCCTAGGAGCCATTTTCTGTGGTCTTCTTCCAGAATCCTTGCCCTCAGCCACGTGGAAT
AATGCCAGCCATCTTCTGATCCTAAAGCCTGCGTGGCCACAGCTGGCCCCTTTCTCTTGC
ACTAAGGGGGCAGAGCAGGCCGCACCCCCCAGTGCCTCACCTTTCCGCTCTGATTAGCAG
GGTGGGGTGACTTTTTGTTAGGCCATCTTTATGTCTGGATAGCCTTTAATCCTGGAGCCA
TCAAGCCCCTAAACATCTCACCCCCCTCTGCTTAGAAATGATGCCTTTCTTAAGACAGGG
GAGGTTGCCTCCGGCCCAGGCTTCCTCTCCTGAATGTGATATCCTTGTGTCCCTTAAATG
CCCCTCCCTCACCACTAGGTGCCTTCAAGCACCATAGCCCTGTTCTAACCTCTAACACTC
GTGACCAAACTAGCCCTGACACACAGGGATCTGGGCGTTCGCTGGCTGTCAGGAGCCAAG
CTTCTAGAGACCTGGAACTGCAGGACTAGAAGAACGGTGGAACTCCTTGGGTCCTGCCTT
CTTAACGATGCTAAAGCCTAGAGATGGGACGTGACTTGCTCAAGGTCGCACAGTTGGATA
GTATCAGAGCTAGAGCCCAGAGTTCCTGGTTTCAAGTCACTTGTGCTTTCTGGGACCAAA
TAGAGGGCACCTGCTGGAGCCCTGGCAGAGCAGCATTGGCGCTGTACTACTGTGGACCTC
ACCATAGCAGAGGCCCAGTAGAAGGGCTCAGGGCCCGTGCCAGGCCTCTCAGTGCTGCTT
AGAGCCTTGTAGCCTCTTGTAATTCTTTGCTCTCCCTTTCCTATCACCAGCCAAGCACCT
GGCCTGGAGAGCTGCCTTTTTGGGGGAACCAGAGGTAGTGAGAGAAGGAAGGGGCTAGGC
AGCAGGACAGGTGCTGCTTTCAATTCCCCTGCAGCTCCTCCCCCTTTTATTTCCCCAGTT
TAGGCATTGATTCTGCCAGCTGTAGAAACTTCAGTCCCTCAGGCTGGCAGCCGCCGCAGG
TAGCTGCCTGGGGGGCCTGGCAGCCGAGGGGCAAGCTAAAGGCAGAAGGACTCTGGGTCT
TGTCTTCAGCTCCCTTCTCACTGCATACAGTGATGTTCCCTCCCTCGCTCCCCCCTTTTC
TCAGAGCTAATACACAGGTGCTATTATTCAGAAAAAAACTGGTCAGCTTTGGCCAACAGT
GAGGTTTCTTCTCTTCTGCCCTAACTATTGTGTAGCCTGTTGTGCTGAAACTGGCTTTGC
TGGCTTTCAGAGCCCTGAAACAAAGAGAAACAGGATCTGTCTCTACCCAGCACAGCAAAT
GGTTATAGTAATTGCCAAAGCCCTCATAAACCCCTCCGGCTTGAGGAGAGCGTGTAATCA
CGGGCACTGCCGCCATGCCCTGGCTGAATGCTCCCCCTCTGCTTGCCCTCCTTGAACTTG
GGGCGTGGGGACTGAGCCTTTCGAGGCCAGCACGCTCTCCTGCAGGGGCTGCTCCGGAGT
GTGCCCTCCTTCTTCTCCCCAGATCAGGTGTCTCTGGCCCCAGGCTCCCGTGCTGAGCTG
CTGAGCGTACCAGGCTGTGTGCGCTCCCACCTTGCTTCCCGCCCTGCGCCCTGGAAGCCG
AGGGTGCTTTCTTTAGAGCTCTAAAATGGCTGTTGAAGGTGCCCCCGGCTGCAGCCCAGC
AGTGGCTGAAGCGCAGGCAGAGGGCAGTGGTTCTCCTAAATAGGAGCCCTGGGGCCTGGC
CAGGCCAGGCCAGGGTTTGGGCCTAATGGCTTTGACTAAATTATCCCATCCCCCTCCTTT
CCGGAAAAGGGGGAGCCAGCGCCACTCACTATCATTCTGCTCTGACCTTGAAGGGGGCGG
TGTTGGCCTGGCTTCTGGAATGGACAGAGCCCGCCATGGAAAGGGCTGGGGGCAGGAGGG
GGAGGGGGGGCACTGCCTGCGGAAGGTAGGATTAGATCATTAGCTCAGTGACCTCCTAGG
GTTTCGATGTGCTGTGTTCTCATCCTACAGCTGGTTTGGTAATGATCTGCAAGTCCCGGA
GAGCAACAGCACAGCTCTGCCTGACGCTCTCATTAAAATCTATGCAGCCAAGCTCGGTGC
TTTGTAGCAGCCGGCCTTGCGAAGCCTCCTCAGCTCGGGGGGCTGGGGACCCAGTCAGCC
GAGAGGCCCTCTGGGCGCTACTTATGCATATGTGCACCAAGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAGGAAAAACCCCAAAGCAGGTCCCTTTGATTGGGTATAAACCGAAGTTGGTGCCTT
CCCCTAGGAGCCATTTTCTGTGGTCTTCTTCCAGAATCCTTGCCCTCAGCCACGTGGAAT
AATGCCAGCCATCTTCTGATCCTAAAGCCTGCGTGGCCACAGCTGGCCCCTTTCTCTTGC
ACTAAGGGGGCAGAGCAGGCCGCACCCCCCAGTGCCTCACCTTTCCGCTCTGATTAGCAG
GGTGGGGTGACTTTTTGTTAGGCCATCTTTATGTCTGGATAGCCTTTAATCCTGGAGCCA
TCAAGCCCCTAAACATCTCACCCCCCTCTGCTTAGAAATGATGCCTTTCTTAAGACAGGG
GAGGTTGCCTCCGGCCCAGGCTTCCTCTCCTGAATGTGATATCCTTGTGTCCCTTAAATG
CCCCTCCCTCACCACTAGGTGCCTTCAAGCACCATAGCCCTGTTCTAACCTCTAACACTC
GTGACCAAACTAGCCCTGACACACAGGGATCTGGGCGTTCGCTGGCTGTCAGGAGCCAAG
CTTCTAGAGACCTGGAACTGCAGGACTAGAAGAACGGTGGAACTCCTTGGGTCCTGCCTT
CTTAACGATGCTAAAGCCTAGAGATGGGACGTGACTTGCTCAAGGTCGCACAGTTGGATA
GTATCAGAGCTAGAGCCCAGAGTTCCTGGTTTCAAGTCACTTGTGCTTTCTGGGACCAAA
TAGAGGGCACCTGCTGGAGCCCTGGCAGAGCAGCATTGGCGCTGTACTACTGTGGACCTC
ACCATAGCAGAGGCCCAGTAGAAGGGCTCAGGGCCCGTGCCAGGCCTCTCAGTGCTGCTT
AGAGCCTTGTAGCCTCTTGTAATTCTTTGCTCTCCCTTTCCTATCACCAGCCAAGCACCT
GGCCTGGAGAGCTGCCTTTTTGGGGGAACCAGAGGTAGTGAGAGAAGGAAGGGGCTAGGC
AGCAGGACAGGTGCTGCTTTCAATTCCCCTGCAGCTCCTCCCCCTTTTATTTCCCCAGTT
TAGGCATTGATTCTGCCAGCTGTAGAAACTTCAGTCCCTCAGGCTGGCAGCCGCCGCAGG
TAGCTGCCTGGGGGGCCTGGCAGCCGAGGGGCAAGCTAAAGGCAGAAGGACTCTGGGTCT
TGTCTTCAGCTCCCTTCTCACTGCATACAGTGATGTTCCCTCCCTCGCTCCCCCCTTTTC
TCAGAGCTAATACACAGGTGCTATTATTCAGAAAAAAACTGGTCAGCTTTGGCCAACAGT
GAGGTTTCTTCTCTTCTGCCCTAACTATTGTGTAGCCTGTTGTGCTGAAACTGGCTTTGC
TGGCTTTCAGAGCCCTGAAACAAAGAGAAACAGGATCTGTCTCTACCCAGCACAGCAAAT
GGTTATAGTAATTGCCAAAGCCCTCATAAACCCCTCCGGCTTGAGGAGAGCGTGTAATCA
CGGGCACTGCCGCCATGCCCTGGCTGAATGCTCCCCCTCTGCTTGCCCTCCTTGAACTTG
GGGCGTGGGGACTGAGCCTTTCGAGGCCAGCACGCTCTCCTGCAGGGGCTGCTCCGGAGT
GTGCCCTCCTTCTTCTCCCCAGATCAGGTGTCTCTGGCCCCAGGCTCCCGTGCTGAGCTG
CTGAGCGTACCAGGCTGTGTGCGCTCCCACCTTGCTTCCCGCCCTGCGCCCTGGAAGCCG
AGGGTGCTTTCTTTAGAGCTCTAAAATGGCTGTTGAAGGTGCCCCCGGCTGCAGCCCAGC
AGTGGCTGAAGCGCAGGCAGAGGGCAGTGGTTCTCCTAAATAGGAGCCCTGGGGCCTGGC
CAGGCCAGGCCAGGGTTTGGGCCTAATGGCTTTGACTAAATTATCCCATCCCCCTCCTTT
CCGGAAAAGGGGGAGCCAGCGCCACTCACTATCATTCTGCTCTGACCTTGAAGGGGGCGG
TGTTGGCCTGGCTTCTGGAATGGACAGAGCCCGCCATGGAAAGGGCTGGGGGCAGGAGGG
GGAGGGGGGGCACTGCCTGCGGAAGGTAGGATTAGATCATTAGCTCAGTGACCTCCTAGG
GTTTCGATGTGCTGTGTTCTCATCCTACAGCTGGTTTGGTAATGATCTGCAAGTCCCGGA
GAGCAACAGCACAGCTCTGCCTGACGCTCTCATTAAAATCTATGCAGCCAAGCTCGGTGC
TTTGTAGCAGCCGGCCTTGCGAAGCCTCCTCAGCTCGGGGGGCTGGGGACCCAGTCAGCC
GAGAGGCCCTCTGGGCGCTACTTATGCATATGTGCACCAAGAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               185-370, - strand, RNAz p=0.93433
               

               
               987-1169, - strand, RNAz p=0.999939
               

               
               1644-1879, - strand, RNAz p=0.985884
               

               
               2150-2268, - strand, RNAz p=0.969463

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-370, - strand, RNAz p=0.93433
               

               
               987-1169, - strand, RNAz p=0.999939
               

               
               1644-1879, - strand, RNAz p=0.985884
               

               
               2150-2268, - strand, RNAz p=0.969463

Predicted microRNA(s): 4 entry(ies)

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Predicted microRNA(s): 4 entry(ies)

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               1104-1188, + strand, RNAmicro p=0.999984
               

               
               1145-1261, - strand, RNAmicro p=0.966128
               

               
               1706-1824, - strand, RNAmicro p=0.94319
               

               
               1676-1801, + strand, RNAmicro p=0.909309

Predicted microRNA(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1104-1188, + strand, RNAmicro p=0.999984
               

               
               1145-1261, - strand, RNAmicro p=0.966128
               

               
               1706-1824, - strand, RNAmicro p=0.94319
               

               
               1676-1801, + strand, RNAmicro p=0.909309

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               1015-1169, BP166729 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP166729.1|), blast E-value=0, identity=100% 
               

               
               987-1169, BP438254 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP438254.1|), blast E-value=0, identity=100% 
               

               
               987-1103, BP462160 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP462160.1|), blast E-value=0, identity=100% 
               

               
               987-1169, BW974001 full-length enriched swine cDNA library, adult periphral 
(dbj|BW974001.1|), blast E-value=0, identity=99.45% 
               

               
               987-1169, CJ009765 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ009765.1|), blast E-value=0, identity=100% 
               

               
               989-1105, UI-M-HY0p-csx-f-20-0-UI.r1 NIH_BMAP_HY0p Mus musculus cDNA clone 
(gb|CV783976.1|), blast E-value=6e-26, identity=89.92%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1015-1169, BP166729 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP166729.1|), blast E-value=0, identity=100% 
               

               
               987-1169, BP438254 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP438254.1|), blast E-value=0, identity=100% 
               

               
               987-1103, BP462160 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP462160.1|), blast E-value=0, identity=100% 
               

               
               987-1169, BW974001 full-length enriched swine cDNA library, adult periphral 
(dbj|BW974001.1|), blast E-value=0, identity=99.45% 
               

               
               987-1169, CJ009765 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ009765.1|), blast E-value=0, identity=100% 
               

               
               989-1105, UI-M-HY0p-csx-f-20-0-UI.r1 NIH_BMAP_HY0p Mus musculus cDNA clone 
(gb|CV783976.1|), blast E-value=6e-26, identity=89.92%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1447, gnl|bosTau2|chr2 (77994031-77995445)
               

               
               1-1447, gnl|Hg17|chr1 (27418556-27417010)
               

               
               1-1447, gnl|Mm7|chr4 (132574548-132576022)
               


               
               1558-2268, gnl|bosTau2|chr2 (77995463-77996178)
               

               
               1558-2268, gnl|Hg17|chr1 (27416964-27416258)
               

               
               1558-2268, gnl|Mm7|chr4 (132576038-132576772)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1447, gnl|bosTau2|chr2 (77994031-77995445)
               

               
               1-1447, gnl|Hg17|chr1 (27418556-27417010)
               

               
               1-1447, gnl|Mm7|chr4 (132574548-132576022)
               


               
               1558-2268, gnl|bosTau2|chr2 (77995463-77996178)
               

               
               1558-2268, gnl|Hg17|chr1 (27416964-27416258)
               

               
               1558-2268, gnl|Mm7|chr4 (132576038-132576772)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pla (0.401016)
               

               
               clu (0.239292)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               clu (0.239292)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	185-370, - strand, RNAz p=0.93433
	987-1169, - strand, RNAz p=0.999939
	1644-1879, - strand, RNAz p=0.985884
	2150-2268, - strand, RNAz p=0.969463

	1104-1188, + strand, RNAmicro p=0.999984
	1145-1261, - strand, RNAmicro p=0.966128
	1706-1824, - strand, RNAmicro p=0.94319
	1676-1801, + strand, RNAmicro p=0.909309

	1015-1169, BP166729 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP166729.1\|), blast E-value=0, identity=100%
	987-1169, BP438254 full-length enriched swine cDNA library, adult lung Sus (dbj\|BP438254.1\|), blast E-value=0, identity=100%
	987-1103, BP462160 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BP462160.1\|), blast E-value=0, identity=100%
	987-1169, BW974001 full-length enriched swine cDNA library, adult periphral (dbj\|BW974001.1\|), blast E-value=0, identity=99.45%
	987-1169, CJ009765 full-length enriched swine cDNA library, adult mesenteric (dbj\|CJ009765.1\|), blast E-value=0, identity=100%
	989-1105, UI-M-HY0p-csx-f-20-0-UI.r1 NIH_BMAP_HY0p Mus musculus cDNA clone (gb\|CV783976.1\|), blast E-value=6e-26, identity=89.92%

	1-1447, gnl\|bosTau2\|chr2 (77994031-77995445)
	1-1447, gnl\|Hg17\|chr1 (27418556-27417010)
	1-1447, gnl\|Mm7\|chr4 (132574548-132576022)

	1558-2268, gnl\|bosTau2\|chr2 (77995463-77996178)
	1558-2268, gnl\|Hg17\|chr1 (27416964-27416258)
	1558-2268, gnl\|Mm7\|chr4 (132576038-132576772)

	pla (0.401016)
	clu (0.239292)
	eye (0.170503)
	nje (0.16592)
	lnt (0.142308)
	eru (0.120048)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)