Ss1.1-Tes1-TES01B010094.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGCCGAGGCCGAGACCCCCGCCCGCGCTCGCGGAGGAGCCGCGCTGTTAGGCCGGCCC GGCGGCAGGCACGTGACCGGGGCGGCGGGCGAGTGGCTTCCGCCCCGGCGCTCGGGAGGC CGCGGAGAAAGCGACGAGAAGACGGGCCCGGTCTGAGGTCTGGCAGCCAGTGACAGAGCC GGGCGTCCACGGCCCGAGCGCCCCCAGCAGCACCATGCCTGCGCTCCTGGAGCGCCCCAA GCTTTCCAACGCCATGGCCAGGGCGTTGCACCGGCACATCATGATGGAGCGGGAGCGCAA GCGGCAGGAGGAAGAAGAGGTGGACAAGATGATGGAACAAAAGATGAAGGAAGAGCAGGA GAGAAGGAAAAAAAAGGAAATGGAAGAGAGAATGTCACTAGAGGAGACCAAGGAACAAAT CCTGAAGTTGCAGGAGAAGCTTTCGGCCCTCCAGGAAGAGAAGCACCAGCTTTTCCTGCA GCTCAAGAAAGTTTTACATGAGGAAGAAAAACGGAGGCGGAAGGAGCAGAGTGACCTGAC CACTCTGACATCGGCAGCATACCAGCAAGGCCTGACTGTTCACACAGGAACTCACCTCCT CAGCATGCAGGGGAGCCCCGGAGGACACAATCGGCCAGGCACCCTCATGGCAGCTGACAG AGCCAAACAGATGTTCGGCCCCCAAGTGCTTACAAACCGACACTACGTGGGCTCAGCAGC TGCTTTCGCAGGGACCCCGGAGCATGGGCAGTTCCAAGGCAGCCCCAGCGGCGCCTATGG GACTGCTCAGCCCCCACCTCACTATGGACCCACCCAGCCTGCCTATAGTCCTAGTCAGCA GCTCAGAGCACCTTCGGCATTTCCTGCAGTGCAGTACCTGTCTCAGCCACAGCCACAGCC CTATGCTGTGCACAGCCACTTTCAGCCCACCCAGACAGGCTTCCTCCAGCCCGGTGGCGC CCTGTCCTTACAAAAGCAGATGGAACACGCTAACCAACAAACTGGCTTCTCTGACTCATC CTCCCTACGCCCCATGCATCCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGCCGAGGCCGAGACCCCCGCCCGCGCTCGCGGAGGAGCCGCGCTGTTAGGCCGGCCC GGCGGCAGGCACGTGACCGGGGCGGCGGGCGAGTGGCTTCCGCCCCGGCGCTCGGGAGGC CGCGGAGAAAGCGACGAGAAGACGGGCCCGGTCTGAGGTCTGGCAGCCAGTGACAGAGCC GGGCGTCCACGGCCCGAGCGCCCCCAGCAGCACCATGCCTGCGCTCCTGGAGCGCCCCAA GCTTTCCAACGCCATGGCCAGGGCGTTGCACCGGCACATCATGATGGAGCGGGAGCGCAA GCGGCAGGAGGAAGAAGAGGTGGACAAGATGATGGAACAAAAGATGAAGGAAGAGCAGGA GAGAAGGAAAAAAAAGGAAATGGAAGAGAGAATGTCACTAGAGGAGACCAAGGAACAAAT CCTGAAGTTGCAGGAGAAGCTTTCGGCCCTCCAGGAAGAGAAGCACCAGCTTTTCCTGCA GCTCAAGAAAGTTTTACATGAGGAAGAAAAACGGAGGCGGAAGGAGCAGAGTGACCTGAC CACTCTGACATCGGCAGCATACCAGCAAGGCCTGACTGTTCACACAGGAACTCACCTCCT CAGCATGCAGGGGAGCCCCGGAGGACACAATCGGCCAGGCACCCTCATGGCAGCTGACAG AGCCAAACAGATGTTCGGCCCCCAAGTGCTTACAAACCGACACTACGTGGGCTCAGCAGC TGCTTTCGCAGGGACCCCGGAGCATGGGCAGTTCCAAGGCAGCCCCAGCGGCGCCTATGG GACTGCTCAGCCCCCACCTCACTATGGACCCACCCAGCCTGCCTATAGTCCTAGTCAGCA GCTCAGAGCACCTTCGGCATTTCCTGCAGTGCAGTACCTGTCTCAGCCACAGCCACAGCC CTATGCTGTGCACAGCCACTTTCAGCCCACCCAGACAGGCTTCCTCCAGCCCGGTGGCGC CCTGTCCTTACAAAAGCAGATGGAACACGCTAACCAACAAACTGGCTTCTCTGACTCATC CTCCCTACGCCCCATGCATCCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 416-531, + strand, RNAz p=0.989046 | |
| 730-848, - strand, RNAz p=0.966649 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 416-531, + strand, RNAz p=0.989046 | |
| 730-848, - strand, RNAz p=0.966649 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 1-308, gnl|bosTau2|chr19 (20905848-20906161) | |
| 1-308, gnl|Hg17|chr17 (7159331-7159002) | |
| 1-308, gnl|Mm7|chr11 (69995689-69996007) | |
| 416-531, gnl|bosTau2|chr19 (20906662-20906777) | |
| 416-531, gnl|canFam2|chr5 (35271392-35271510) | |
| 416-531, gnl|canFam2|chr5 (35271394-35271506) | |
| 416-531, gnl|danRer3|chr5 (15038033-15038149) | |
| 416-531, gnl|danRer3|chr5 (15038035-15038147) | |
| 416-531, gnl|dasNov1|scaffold_9754 (14458-14556) | |
| 416-531, gnl|dasNov1|scaffold_9754 (14455-14558) | |
| 416-531, gnl|echTel1|scaffold_320465 (2523-2641) | |
| 416-531, gnl|echTel1|scaffold_320465 (2525-2637) | |
| 416-531, gnl|fr1|chrUn (11675140-11675258) | |
| 416-531, gnl|hg17|chr17 (7158333-7158451) | |
| 416-531, gnl|Hg17|chr17 (7158449-7158334) | |
| 416-531, gnl|hg17|chr9 (2866110-2866222) | |
| 416-531, gnl|loxAfr1|scaffold_95252 (1104-1205) | |
| 416-531, gnl|loxAfr1|scaffold_95252 (1106-1206) | |
| 416-531, gnl|mm7|chr11 (69996622-69996504) | |
| 416-531, gnl|mm7|chr11 (69996620-69996508) | |
| 416-531, gnl|Mm7|chr11 (69996504-69996619) | |
| 416-531, gnl|monDom2|scaffold_66 (4250318-4250436) | |
| 416-531, gnl|monDom2|scaffold_66 (4250320-4250432) | |
| 416-531, gnl|oryCun1|scaffold_211229 (32063-31945) | |
| 416-531, gnl|oryCun1|scaffold_211229 (32059-31949) | |
| 416-531, gnl|panTro1|chr11 (2832206-2832318) | |
| 416-531, gnl|panTro1|chr19_random (44591459-44591341) | |
| 416-531, gnl|rheMac2|chr15 (74361712-74361600) | |
| 416-531, gnl|rheMac2|chr16 (7050091-7050209) | |
| 416-531, gnl|rn3|chr10 (56772287-56772169) | |
| 416-531, gnl|rn3|chr10 (56772285-56772173) | |
| 416-531, gnl|tetNig1|chrUn_random (46595049-46595167) | |
| 416-531, gnl|tetNig1|chrUn_random (46595051-46595159) | |
| 697-848, gnl|bosTau2|chr19 (20563691-20563540) | |
| 697-848, gnl|canFam2|chr34 (22357801-22357904) | |
| 697-848, gnl|dasNov1|scaffold_9754 (14313-14237) | |
| 697-848, gnl|echTel1|scaffold_320465 (2036-1933) | |
| 697-848, gnl|Hg17|chr17 (7157762-7157611) | |
| 697-848, gnl|hg17|chr3 (187973489-187973579) | |
| 697-848, gnl|loxAfr1|scaffold_95252 (535-432) | |
| 697-848, gnl|Mm7|chr11 (69997207-69997358) | |
| 697-848, gnl|mm7|chr16 (22759100-22759184) | |
| 697-848, gnl|oryCun1|scaffold_206335 (20809-20708) | |
| 697-848, gnl|panTro1|chr2 (192065341-192065431) | |
| 697-848, gnl|rheMac2|chr2 (179129041-179129134) | |
| 697-848, gnl|rn3|chr11 (80022091-80022015) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-308, gnl|bosTau2|chr19 (20905848-20906161) | |
| 1-308, gnl|Hg17|chr17 (7159331-7159002) | |
| 1-308, gnl|Mm7|chr11 (69995689-69996007) | |
| 416-531, gnl|bosTau2|chr19 (20906662-20906777) | |
| 416-531, gnl|canFam2|chr5 (35271392-35271510) | |
| 416-531, gnl|canFam2|chr5 (35271394-35271506) | |
| 416-531, gnl|danRer3|chr5 (15038033-15038149) | |
| 416-531, gnl|danRer3|chr5 (15038035-15038147) | |
| 416-531, gnl|dasNov1|scaffold_9754 (14458-14556) | |
| 416-531, gnl|dasNov1|scaffold_9754 (14455-14558) | |
| 416-531, gnl|echTel1|scaffold_320465 (2523-2641) | |
| 416-531, gnl|echTel1|scaffold_320465 (2525-2637) | |
| 416-531, gnl|fr1|chrUn (11675140-11675258) | |
| 416-531, gnl|hg17|chr17 (7158333-7158451) | |
| 416-531, gnl|Hg17|chr17 (7158449-7158334) | |
| 416-531, gnl|hg17|chr9 (2866110-2866222) | |
| 416-531, gnl|loxAfr1|scaffold_95252 (1104-1205) | |
| 416-531, gnl|loxAfr1|scaffold_95252 (1106-1206) | |
| 416-531, gnl|mm7|chr11 (69996622-69996504) | |
| 416-531, gnl|mm7|chr11 (69996620-69996508) | |
| 416-531, gnl|Mm7|chr11 (69996504-69996619) | |
| 416-531, gnl|monDom2|scaffold_66 (4250318-4250436) | |
| 416-531, gnl|monDom2|scaffold_66 (4250320-4250432) | |
| 416-531, gnl|oryCun1|scaffold_211229 (32063-31945) | |
| 416-531, gnl|oryCun1|scaffold_211229 (32059-31949) | |
| 416-531, gnl|panTro1|chr11 (2832206-2832318) | |
| 416-531, gnl|panTro1|chr19_random (44591459-44591341) | |
| 416-531, gnl|rheMac2|chr15 (74361712-74361600) | |
| 416-531, gnl|rheMac2|chr16 (7050091-7050209) | |
| 416-531, gnl|rn3|chr10 (56772287-56772169) | |
| 416-531, gnl|rn3|chr10 (56772285-56772173) | |
| 416-531, gnl|tetNig1|chrUn_random (46595049-46595167) | |
| 416-531, gnl|tetNig1|chrUn_random (46595051-46595159) | |
| 697-848, gnl|bosTau2|chr19 (20563691-20563540) | |
| 697-848, gnl|canFam2|chr34 (22357801-22357904) | |
| 697-848, gnl|dasNov1|scaffold_9754 (14313-14237) | |
| 697-848, gnl|echTel1|scaffold_320465 (2036-1933) | |
| 697-848, gnl|Hg17|chr17 (7157762-7157611) | |
| 697-848, gnl|hg17|chr3 (187973489-187973579) | |
| 697-848, gnl|loxAfr1|scaffold_95252 (535-432) | |
| 697-848, gnl|Mm7|chr11 (69997207-69997358) | |
| 697-848, gnl|mm7|chr16 (22759100-22759184) | |
| 697-848, gnl|oryCun1|scaffold_206335 (20809-20708) | |
| 697-848, gnl|panTro1|chr2 (192065341-192065431) | |
| 697-848, gnl|rheMac2|chr2 (179129041-179129134) | |
| 697-848, gnl|rn3|chr11 (80022091-80022015) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ebs (0.236602) | |
| ece (0.229305) | |
| mcp (0.170648) | |
| nca (0.136874) | |
| jca (0.11396) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| ece (0.229305) | |
| mcp (0.170648) | |
| nca (0.136874) | |
| jca (0.11396) |