Ss1.1-Tes1-TES01B010111.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGTCAAACAGTTTTATTTGAACATCCGAGGCCTGGGTCTGATAGGTGGGGAGAGTATG CTGTGCAGGCCCACCCTGCAGACACAGGAACACCATGTATCTTAAGACCCCTTGGCCCCA GGGCTCTCTGACCAGCCCTGTGAGGAGGGGCGACATTCCCCAGGGCAGCGGTTTGGGGTA GGGCAGGCACGGCAGCCCCAGCTTCACTCTGGAAGCCAGTTTTCCATCTCGTCCATCTCG TCCAGGAGCAGGTGCTCTGTCCTGGAAGCCGCACCAAGGGGGCTCCGCACCCTGCCCTCC AGCCTGGGGTGCTGCTTCCGCTGCCTCAGCATCCTGCCTCCAGGTCCCCAGCATTCCCCA AAGGCTGGGAGGTGGCTTCCTTCCCCCTCCACTTGGTGTCCCTGGCTGTCCACAATGCCC GCCTCCTCCAGAGTGACTTCTGGCTGGGCCAGCAGCTCCCAGCCCTCGGGGCTGTCTGTC TTCCAGAGGCGGGACTCCCGCTGTACTACCAGAAGCTTCTTTAACTCTGACTCCACAAAA CGCAGCGGCGACGGGAGGGTGACGATGCCTGGGACACAGAGCTTGAAGGAACTGTCCTCG TCCTCCATTTCCTCCTCCATGTCTTTGTCCTCCTGGGGCGAGCCTTCCTTGAGAGGAAAC TTGGTCATGGCTGACTTCTGAAGCTGCTTGTACAAGCTGAGGAGGCGGCTCCATGGCGTT GCCCCCACCTTCGAGGAGGCCAGCCTGAGTTCTCCTGCTGCCTCACCTTCCTCCAGCACC ATGGGGCAGGTAGGCCGCCAGCTCGCCATCATTGGGGATGACATCAACCGGCGATACGAC TCGGAATTCCAGGCCATGCTGCAGCACCTGCCCTCTGAGCTTCCTCCTCCCACAGAGACA CAGGCTCTTCCCAAATCGAGGTCAGGCTCAGCCGTTCTGCTTTCCAGCCGGGGGAGGGGA TGAGGTCCCAGGGGTGAGAGGGGAAGCAGGCCGGAGGGCTTTCTGGGGGTCCCCGCTGAT TGTATCCATGCTCTGCCTGCAGCCTGCCCAGAGTCATCAGATGGGAAGGGTGGGGAGCTG GCCCTTGCCGCCAGGATACTGGCTCGAGGTCAGGCCGGAGAGGTGGGGGCTGGAGCGGTT AGTCTCCAGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGTCAAACAGTTTTATTTGAACATCCGAGGCCTGGGTCTGATAGGTGGGGAGAGTATG CTGTGCAGGCCCACCCTGCAGACACAGGAACACCATGTATCTTAAGACCCCTTGGCCCCA GGGCTCTCTGACCAGCCCTGTGAGGAGGGGCGACATTCCCCAGGGCAGCGGTTTGGGGTA GGGCAGGCACGGCAGCCCCAGCTTCACTCTGGAAGCCAGTTTTCCATCTCGTCCATCTCG TCCAGGAGCAGGTGCTCTGTCCTGGAAGCCGCACCAAGGGGGCTCCGCACCCTGCCCTCC AGCCTGGGGTGCTGCTTCCGCTGCCTCAGCATCCTGCCTCCAGGTCCCCAGCATTCCCCA AAGGCTGGGAGGTGGCTTCCTTCCCCCTCCACTTGGTGTCCCTGGCTGTCCACAATGCCC GCCTCCTCCAGAGTGACTTCTGGCTGGGCCAGCAGCTCCCAGCCCTCGGGGCTGTCTGTC TTCCAGAGGCGGGACTCCCGCTGTACTACCAGAAGCTTCTTTAACTCTGACTCCACAAAA CGCAGCGGCGACGGGAGGGTGACGATGCCTGGGACACAGAGCTTGAAGGAACTGTCCTCG TCCTCCATTTCCTCCTCCATGTCTTTGTCCTCCTGGGGCGAGCCTTCCTTGAGAGGAAAC TTGGTCATGGCTGACTTCTGAAGCTGCTTGTACAAGCTGAGGAGGCGGCTCCATGGCGTT GCCCCCACCTTCGAGGAGGCCAGCCTGAGTTCTCCTGCTGCCTCACCTTCCTCCAGCACC ATGGGGCAGGTAGGCCGCCAGCTCGCCATCATTGGGGATGACATCAACCGGCGATACGAC TCGGAATTCCAGGCCATGCTGCAGCACCTGCCCTCTGAGCTTCCTCCTCCCACAGAGACA CAGGCTCTTCCCAAATCGAGGTCAGGCTCAGCCGTTCTGCTTTCCAGCCGGGGGAGGGGA TGAGGTCCCAGGGGTGAGAGGGGAAGCAGGCCGGAGGGCTTTCTGGGGGTCCCCGCTGAT TGTATCCATGCTCTGCCTGCAGCCTGCCCAGAGTCATCAGATGGGAAGGGTGGGGAGCTG GCCCTTGCCGCCAGGATACTGGCTCGAGGTCAGGCCGGAGAGGTGGGGGCTGGAGCGGTT AGTCTCCAGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 424-541, + strand, RNAz p=0.816779 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 424-541, + strand, RNAz p=0.816779 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_207497, + |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 11-256, gnl|bosTau2|chr23 (6115953-6115716) | |
| 11-256, gnl|canFam2|chr12 (5965762-5966556) | |
| 11-256, gnl|hg17|chr6 (33664275-33665096) | |
| 11-256, gnl|Hg17|chr6 (33664979-33664729) | |
| 11-256, gnl|loxAfr1|scaffold_20278 (4696-3916) | |
| 11-256, gnl|mm7|chr17 (25220550-25221333) | |
| 11-256, gnl|Mm7|chr17 (25221226-25220974) | |
| 11-256, gnl|panTro1|chr5_random (24846634-24847456) | |
| 11-256, gnl|rn3|chr20 (5271234-5271981) | |
| 395-541, gnl|bosTau2|chr23 (6114187-6114041) | |
| 395-541, gnl|canFam2|chr12 (5964443-5964609) | |
| 395-541, gnl|echTel1|scaffold_294736 (5241-5413) | |
| 395-541, gnl|hg17|chr6 (33662387-33662571) | |
| 395-541, gnl|Hg17|chr6 (33662571-33662425) | |
| 395-541, gnl|loxAfr1|scaffold_12335 (24029-24202) | |
| 395-541, gnl|mm7|chr17 (25219588-25219773) | |
| 395-541, gnl|Mm7|chr17 (25219772-25219628) | |
| 395-541, gnl|oryCun1|scaffold_131414 (669-494) | |
| 395-541, gnl|panTro1|chr5_random (24844581-24844765) | |
| 395-541, gnl|rn3|chr20 (5270302-5270466) | |
| 757-871, gnl|bosTau2|chr23 (6106294-6106180) | |
| 757-871, gnl|canFam2|chr12 (5956423-5956563) | |
| 757-871, gnl|canFam2|chr12 (5956423-5956563) | |
| 757-871, gnl|canFam2|chr12 (5956418-5956566) | |
| 757-871, gnl|dasNov1|scaffold_147808 (1013-895) | |
| 757-871, gnl|dasNov1|scaffold_147808 (1013-895) | |
| 757-871, gnl|dasNov1|scaffold_47838 (5502-5606) | |
| 757-871, gnl|galGal2|chr26 (3223877-3223730) | |
| 757-871, gnl|galGal2|chr26 (3223877-3223730) | |
| 757-871, gnl|galGal2|chr26 (3223879-3223731) | |
| 757-871, gnl|hg17|chr11 (129922185-129922332) | |
| 757-871, gnl|hg17|chr20 (30741930-30742077) | |
| 757-871, gnl|hg17|chr6 (33651052-33651200) | |
| 757-871, gnl|Hg17|chr6 (33651225-33651102) | |
| 757-871, gnl|loxAfr1|scaffold_12335 (15260-15394) | |
| 757-871, gnl|loxAfr1|scaffold_12335 (15259-15394) | |
| 757-871, gnl|loxAfr1|scaffold_12335 (15249-15397) | |
| 757-871, gnl|mm7|chr17 (25207040-25207183) | |
| 757-871, gnl|mm7|chr17 (25207040-25207183) | |
| 757-871, gnl|mm7|chr17 (25207038-25207186) | |
| 757-871, gnl|Mm7|chr17 (25207202-25207088) | |
| 757-871, gnl|monDom2|scaffold_42 (14758087-14757940) | |
| 757-871, gnl|monDom2|scaffold_42 (14758081-14757944) | |
| 757-871, gnl|monDom2|scaffold_42 (14758089-14757941) | |
| 757-871, gnl|oryCun1|scaffold_115786 (1287-1143) | |
| 757-871, gnl|oryCun1|scaffold_115786 (1287-1143) | |
| 757-871, gnl|oryCun1|scaffold_115786 (1292-1144) | |
| 757-871, gnl|panTro1|chr5 (34097246-34097389) | |
| 757-871, gnl|panTro1|chr5 (34097244-34097392) | |
| 757-871, gnl|panTro1|chr9 (132058025-132058172) | |
| 757-871, gnl|rheMac2|chr14 (128604029-128604176) | |
| 757-871, gnl|rheMac2|chr14 (128604029-128604176) | |
| 757-871, gnl|rheMac2|chr14 (128604029-128604175) | |
| 757-871, gnl|rn3|chr20 (5258823-5258970) | |
| 757-871, gnl|rn3|chr20 (5258823-5258970) | |
| 757-871, gnl|rn3|chr20 (5258821-5258969) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-256, gnl|bosTau2|chr23 (6115953-6115716) | |
| 11-256, gnl|canFam2|chr12 (5965762-5966556) | |
| 11-256, gnl|hg17|chr6 (33664275-33665096) | |
| 11-256, gnl|Hg17|chr6 (33664979-33664729) | |
| 11-256, gnl|loxAfr1|scaffold_20278 (4696-3916) | |
| 11-256, gnl|mm7|chr17 (25220550-25221333) | |
| 11-256, gnl|Mm7|chr17 (25221226-25220974) | |
| 11-256, gnl|panTro1|chr5_random (24846634-24847456) | |
| 11-256, gnl|rn3|chr20 (5271234-5271981) | |
| 395-541, gnl|bosTau2|chr23 (6114187-6114041) | |
| 395-541, gnl|canFam2|chr12 (5964443-5964609) | |
| 395-541, gnl|echTel1|scaffold_294736 (5241-5413) | |
| 395-541, gnl|hg17|chr6 (33662387-33662571) | |
| 395-541, gnl|Hg17|chr6 (33662571-33662425) | |
| 395-541, gnl|loxAfr1|scaffold_12335 (24029-24202) | |
| 395-541, gnl|mm7|chr17 (25219588-25219773) | |
| 395-541, gnl|Mm7|chr17 (25219772-25219628) | |
| 395-541, gnl|oryCun1|scaffold_131414 (669-494) | |
| 395-541, gnl|panTro1|chr5_random (24844581-24844765) | |
| 395-541, gnl|rn3|chr20 (5270302-5270466) | |
| 757-871, gnl|bosTau2|chr23 (6106294-6106180) | |
| 757-871, gnl|canFam2|chr12 (5956423-5956563) | |
| 757-871, gnl|canFam2|chr12 (5956423-5956563) | |
| 757-871, gnl|canFam2|chr12 (5956418-5956566) | |
| 757-871, gnl|dasNov1|scaffold_147808 (1013-895) | |
| 757-871, gnl|dasNov1|scaffold_147808 (1013-895) | |
| 757-871, gnl|dasNov1|scaffold_47838 (5502-5606) | |
| 757-871, gnl|galGal2|chr26 (3223877-3223730) | |
| 757-871, gnl|galGal2|chr26 (3223877-3223730) | |
| 757-871, gnl|galGal2|chr26 (3223879-3223731) | |
| 757-871, gnl|hg17|chr11 (129922185-129922332) | |
| 757-871, gnl|hg17|chr20 (30741930-30742077) | |
| 757-871, gnl|hg17|chr6 (33651052-33651200) | |
| 757-871, gnl|Hg17|chr6 (33651225-33651102) | |
| 757-871, gnl|loxAfr1|scaffold_12335 (15260-15394) | |
| 757-871, gnl|loxAfr1|scaffold_12335 (15259-15394) | |
| 757-871, gnl|loxAfr1|scaffold_12335 (15249-15397) | |
| 757-871, gnl|mm7|chr17 (25207040-25207183) | |
| 757-871, gnl|mm7|chr17 (25207040-25207183) | |
| 757-871, gnl|mm7|chr17 (25207038-25207186) | |
| 757-871, gnl|Mm7|chr17 (25207202-25207088) | |
| 757-871, gnl|monDom2|scaffold_42 (14758087-14757940) | |
| 757-871, gnl|monDom2|scaffold_42 (14758081-14757944) | |
| 757-871, gnl|monDom2|scaffold_42 (14758089-14757941) | |
| 757-871, gnl|oryCun1|scaffold_115786 (1287-1143) | |
| 757-871, gnl|oryCun1|scaffold_115786 (1287-1143) | |
| 757-871, gnl|oryCun1|scaffold_115786 (1292-1144) | |
| 757-871, gnl|panTro1|chr5 (34097246-34097389) | |
| 757-871, gnl|panTro1|chr5 (34097244-34097392) | |
| 757-871, gnl|panTro1|chr9 (132058025-132058172) | |
| 757-871, gnl|rheMac2|chr14 (128604029-128604176) | |
| 757-871, gnl|rheMac2|chr14 (128604029-128604176) | |
| 757-871, gnl|rheMac2|chr14 (128604029-128604175) | |
| 757-871, gnl|rn3|chr20 (5258823-5258970) | |
| 757-871, gnl|rn3|chr20 (5258823-5258970) | |
| 757-871, gnl|rn3|chr20 (5258821-5258969) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) |