Non-Coding RNA Search

Ss1.1-Tes1-TES01B020011.5

Sequence:


               
               GTCTGTCACATACAGCACTCAGTCTCCCTCCCAAGTCAGATCTTTCTCCTGACCTGCATT
TCTGCTAAGTGTTAGAATCGAGATTTCTTTGCTGGTGATCCATAGGTATGCCCTGAATCA
CGTGGTTCTTCCCCTGTTCATTGATTCATTCATTCATCCATCACCCACATCTTCCGGAGG
GCCTGCCCTGGGCAGTTCTGGAAGACTGCAGAACAGGACAGACTCAGTCTTGGCCTCTGA
GACCAGTTGGTGAAAGAGTTAGTGCACAGGGCATTTAAAGGAGGTGATCTGAGATTCTTT
AACTAACATAGGACCCTGCTCTGGGCCATCAGGAAAGGCCTAAGGATGAGCAGGACTAAG
GGGATAAAGGGATGGTACCTTCAGCACCAGCCCTTGATGAACAGCGCTCTAAGGACCATC
CTTCTCCAGTGGGGCTGCCTGATATTACTCCTTTGTAGTGATACTCTCGTATGGGCATCT
TTCCTGACTTATCTTCAAATGCACTGTTACTTTGACACCAAGAATCTGTCTAACAGAACC
CAAAGTCTTTAGCTTGACATTCAAGGCCTGCCATGCTCTGTTTTCATTCTCCCTTTTCAG
CATGTGCTCAACCCAGTCAAGGGGCTGCTGACCTGGTCGTCTGCTAAGGGTTGAGACACA
TTCCCATCAGGAGCCCTGGCTCCTTGGGGTAGCCATAGAGGGAGGGGGAGTGCTGCTGCC
CATGGTAAATCTAATAAGGTTCCTCCTTCAGGTCCTTTAACAGAATTCTGTTTCTTCTCT
CCAGTGAGAATTGCAAAGAGGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGTCACATACAGCACTCAGTCTCCCTCCCAAGTCAGATCTTTCTCCTGACCTGCATT
TCTGCTAAGTGTTAGAATCGAGATTTCTTTGCTGGTGATCCATAGGTATGCCCTGAATCA
CGTGGTTCTTCCCCTGTTCATTGATTCATTCATTCATCCATCACCCACATCTTCCGGAGG
GCCTGCCCTGGGCAGTTCTGGAAGACTGCAGAACAGGACAGACTCAGTCTTGGCCTCTGA
GACCAGTTGGTGAAAGAGTTAGTGCACAGGGCATTTAAAGGAGGTGATCTGAGATTCTTT
AACTAACATAGGACCCTGCTCTGGGCCATCAGGAAAGGCCTAAGGATGAGCAGGACTAAG
GGGATAAAGGGATGGTACCTTCAGCACCAGCCCTTGATGAACAGCGCTCTAAGGACCATC
CTTCTCCAGTGGGGCTGCCTGATATTACTCCTTTGTAGTGATACTCTCGTATGGGCATCT
TTCCTGACTTATCTTCAAATGCACTGTTACTTTGACACCAAGAATCTGTCTAACAGAACC
CAAAGTCTTTAGCTTGACATTCAAGGCCTGCCATGCTCTGTTTTCATTCTCCCTTTTCAG
CATGTGCTCAACCCAGTCAAGGGGCTGCTGACCTGGTCGTCTGCTAAGGGTTGAGACACA
TTCCCATCAGGAGCCCTGGCTCCTTGGGGTAGCCATAGAGGGAGGGGGAGTGCTGCTGCC
CATGGTAAATCTAATAAGGTTCCTCCTTCAGGTCCTTTAACAGAATTCTGTTTCTTCTCT
CCAGTGAGAATTGCAAAGAGGGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               301-411, + strand, RNAz p=0.754888

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               301-411, + strand, RNAz p=0.754888

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               107-588, gnl|bosTau2|chr11 (9679534-9680011)
               

               
               107-588, gnl|Hg17|chr2 (74285676-74285186)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-588, gnl|bosTau2|chr11 (9679534-9680011)
               

               
               107-588, gnl|Hg17|chr2 (74285676-74285186)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	107-588, gnl\|bosTau2\|chr11 (9679534-9680011)
	107-588, gnl\|Hg17\|chr2 (74285676-74285186)