Ss1.1-Tes1-TES01B020013.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCATTCCGGCGGCCCAGACATCTCTGCGGTAGCGCTGTCGCGGAGGCTTCTTGTCGTC ATGAAGGACGTACCTGGCTTCTTACAGCAGAGCCAAAGCTCTGGGCCCGGCCAGGCCGCC GTGTGGCACCGTCTGGAGGAGCTCTACACAAAGAAGTTGTGGCATCAGCTGACACTTCAG GTGCTTGATTTTGTGCAGGACCCGTGCTTTGCCCAAGGAGATGGTCTCATTAAGCTTTAC GAAAACTTCATCAGTGAATTTGAACACAGGGTGAACCCTCTATCTCTGGTAGAAATCATT CTTCATGTAGTTAGACAGATGACTGATCCTAATGTGGCTCTTACTTTTCTGGAAAAGACT CGTGAGAAGGTGAAGAGCAGTGATGAGGCAGTGATCCTGTGCAAAACTGCAATTGGAGCT CTGAAATTAAATATCGGGGACCTGCAAGTTACGAAGGAAACAATTGAAGACGTGGAGGAA ATGCTCAGCAGCCTCCCCGGTGTAACATCCGTTCACAGCCGTTTCTACGACCTCTCCAGC AAATACTACCAGACCATCGGGAACCACGCTTCCTACTACAAAGACGCTCTGCGGTTTCTC GGCTGTGTAGACATCAAGGATCTGCCAGTGTCTGAGCAGCAGGAGAGAGCTTTCACACTG GGACTAGCAGGACTTCTCGGCGAGGGAGTTTTTAACTTTGGAGAACTCCTCATGCACCCC GTGCTGGAGTCGCTGAGGGACACCGACCGGCAGTGGCTGATCGACACCCTTTATGCCTTT AACAGCGGCAACGTAGAGCGATTCCAGACTCTGAAGACCGCCTGGGGCCAGCAGCCTGAT TTAGCAGCCAACGAAGCCCAACTTCTGAGGAAAATTCAGTTGCTGTGCCTCATGGAGATG ACTTTCACACGACCTGCCAATCATAGACAACTCACTTTTGAAGAAATTGCCAAAAGTGCC AAAATCACCGTGAATGAGGTGGAGTTGCTGGTGATGAAAGCCCTCTCAGTGGGACTGGTG AAAGGCAGTATTGATGAAGTGGATAAGCGGGTTCACATGACCTGGGTGCAGCCCCGCGTG TTGGATTTGCAACAGATCAGGGGCATGAAGGACCGCCTGGAGTTCTGGTGCACCGACGTG AAGAGCATGGAGATGCTGGTGGAGCACCAGGCCCACGACATCCTCACCTAGGCCTCTGCC TGCGCTTGGCTGTGGAGAGCTGTTTCGCGGCCGACGAACCTGGCGGCTGAGAAGATCTGC ATTTAATTGGGGTGGGGGCTGGGATTCAGTTTGGACTAGGGACTGTTCTCTCTGTGGAAA CAGGCCTGTCACTGACAGGGGCGCCCAGCCACAGGCAGAAGCCTCCTTGGTGGATGTCAC TGGAGCCTGCAGTGGCGAGGCGTCACTCAGGCTCCAGTGATGTGGCAGGCAGGTGCGTGG GTGCCCCTCCACTCCAGGGTTGCTCTCTGTTGCATCCACCCTTGTGAACATCTTTTCCAG TGTGGTTTGACGGTGTTTCTGTAATAAATGCCTTGCCTCTGTTTAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCATTCCGGCGGCCCAGACATCTCTGCGGTAGCGCTGTCGCGGAGGCTTCTTGTCGTC ATGAAGGACGTACCTGGCTTCTTACAGCAGAGCCAAAGCTCTGGGCCCGGCCAGGCCGCC GTGTGGCACCGTCTGGAGGAGCTCTACACAAAGAAGTTGTGGCATCAGCTGACACTTCAG GTGCTTGATTTTGTGCAGGACCCGTGCTTTGCCCAAGGAGATGGTCTCATTAAGCTTTAC GAAAACTTCATCAGTGAATTTGAACACAGGGTGAACCCTCTATCTCTGGTAGAAATCATT CTTCATGTAGTTAGACAGATGACTGATCCTAATGTGGCTCTTACTTTTCTGGAAAAGACT CGTGAGAAGGTGAAGAGCAGTGATGAGGCAGTGATCCTGTGCAAAACTGCAATTGGAGCT CTGAAATTAAATATCGGGGACCTGCAAGTTACGAAGGAAACAATTGAAGACGTGGAGGAA ATGCTCAGCAGCCTCCCCGGTGTAACATCCGTTCACAGCCGTTTCTACGACCTCTCCAGC AAATACTACCAGACCATCGGGAACCACGCTTCCTACTACAAAGACGCTCTGCGGTTTCTC GGCTGTGTAGACATCAAGGATCTGCCAGTGTCTGAGCAGCAGGAGAGAGCTTTCACACTG GGACTAGCAGGACTTCTCGGCGAGGGAGTTTTTAACTTTGGAGAACTCCTCATGCACCCC GTGCTGGAGTCGCTGAGGGACACCGACCGGCAGTGGCTGATCGACACCCTTTATGCCTTT AACAGCGGCAACGTAGAGCGATTCCAGACTCTGAAGACCGCCTGGGGCCAGCAGCCTGAT TTAGCAGCCAACGAAGCCCAACTTCTGAGGAAAATTCAGTTGCTGTGCCTCATGGAGATG ACTTTCACACGACCTGCCAATCATAGACAACTCACTTTTGAAGAAATTGCCAAAAGTGCC AAAATCACCGTGAATGAGGTGGAGTTGCTGGTGATGAAAGCCCTCTCAGTGGGACTGGTG AAAGGCAGTATTGATGAAGTGGATAAGCGGGTTCACATGACCTGGGTGCAGCCCCGCGTG TTGGATTTGCAACAGATCAGGGGCATGAAGGACCGCCTGGAGTTCTGGTGCACCGACGTG AAGAGCATGGAGATGCTGGTGGAGCACCAGGCCCACGACATCCTCACCTAGGCCTCTGCC TGCGCTTGGCTGTGGAGAGCTGTTTCGCGGCCGACGAACCTGGCGGCTGAGAAGATCTGC ATTTAATTGGGGTGGGGGCTGGGATTCAGTTTGGACTAGGGACTGTTCTCTCTGTGGAAA CAGGCCTGTCACTGACAGGGGCGCCCAGCCACAGGCAGAAGCCTCCTTGGTGGATGTCAC TGGAGCCTGCAGTGGCGAGGCGTCACTCAGGCTCCAGTGATGTGGCAGGCAGGTGCGTGG GTGCCCCTCCACTCCAGGGTTGCTCTCTGTTGCATCCACCCTTGTGAACATCTTTTCCAG TGTGGTTTGACGGTGTTTCTGTAATAAATGCCTTGCCTCTGTTTAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1331-1445, + strand, RNAz p=0.999791 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1331-1445, + strand, RNAz p=0.999791 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 14-157, gnl|bosTau2|chr29 (45573632-45573489) | |
| 14-157, gnl|Hg17|chr11 (227002-227146) | |
| 14-157, gnl|Mm7|chr7 (137299690-137299831) | |
| 455-628, gnl|bosTau2|chr29 (45500642-45500815) | |
| 455-628, gnl|canFam2|chr18 (28385624-28385835) | |
| 455-628, gnl|danRer3|chr25 (7219375-7219192) | |
| 455-628, gnl|dasNov1|scaffold_76565 (2715-2932) | |
| 455-628, gnl|echTel1|scaffold_281413 (34014-33823) | |
| 455-628, gnl|fr1|chrUn (23900959-23900776) | |
| 455-628, gnl|galGal2|chr5 (1840426-1840631) | |
| 455-628, gnl|hg17|chr11 (237259-237468) | |
| 455-628, gnl|Hg17|chr11 (237275-237448) | |
| 455-628, gnl|loxAfr1|scaffold_50480 (3090-3285) | |
| 455-628, gnl|mm7|chr7 (137306550-137306761) | |
| 455-628, gnl|Mm7|chr7 (137306566-137306739) | |
| 455-628, gnl|monDom2|scaffold_4 (126312781-126312951) | |
| 455-628, gnl|oryCun1|scaffold_168348 (1016-1224) | |
| 455-628, gnl|panTro1|chr9 (289872-290081) | |
| 455-628, gnl|rn3|chr1 (201200242-201200451) | |
| 455-628, gnl|tetNig1|chrUn_random (110387703-110387893) | |
| 455-628, gnl|xenTro1|scaffold_357 (201614-201810) | |
| 709-834, gnl|bosTau2|chr29 (45501955-45502080) | |
| 709-834, gnl|canFam2|chr18 (28387076-28387279) | |
| 709-834, gnl|danRer3|chr25 (7217697-7217533) | |
| 709-834, gnl|dasNov1|scaffold_76565 (3995-4181) | |
| 709-834, gnl|echTel1|scaffold_281413 (30500-30334) | |
| 709-834, gnl|fr1|chrUn (23900575-23900409) | |
| 709-834, gnl|hg17|chr11 (238896-239074) | |
| 709-834, gnl|Hg17|chr11 (238932-239057) | |
| 709-834, gnl|loxAfr1|scaffold_50480 (4287-4462) | |
| 709-834, gnl|mm7|chr7 (137307718-137307893) | |
| 709-834, gnl|Mm7|chr7 (137307758-137307883) | |
| 709-834, gnl|monDom2|scaffold_4 (126313031-126313181) | |
| 709-834, gnl|oryCun1|scaffold_168348 (1950-2119) | |
| 709-834, gnl|panTro1|chr9 (291508-291686) | |
| 709-834, gnl|rn3|chr1 (201201413-201201582) | |
| 709-834, gnl|xenTro1|scaffold_357 (202284-202465) | |
| 1087-1445, gnl|bosTau2|chr29 (45504116-45504480) | |
| 1087-1445, gnl|Hg17|chr11 (242494-242841) | |
| 1087-1445, gnl|Mm7|chr7 (137315446-137315802) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-157, gnl|bosTau2|chr29 (45573632-45573489) | |
| 14-157, gnl|Hg17|chr11 (227002-227146) | |
| 14-157, gnl|Mm7|chr7 (137299690-137299831) | |
| 455-628, gnl|bosTau2|chr29 (45500642-45500815) | |
| 455-628, gnl|canFam2|chr18 (28385624-28385835) | |
| 455-628, gnl|danRer3|chr25 (7219375-7219192) | |
| 455-628, gnl|dasNov1|scaffold_76565 (2715-2932) | |
| 455-628, gnl|echTel1|scaffold_281413 (34014-33823) | |
| 455-628, gnl|fr1|chrUn (23900959-23900776) | |
| 455-628, gnl|galGal2|chr5 (1840426-1840631) | |
| 455-628, gnl|hg17|chr11 (237259-237468) | |
| 455-628, gnl|Hg17|chr11 (237275-237448) | |
| 455-628, gnl|loxAfr1|scaffold_50480 (3090-3285) | |
| 455-628, gnl|mm7|chr7 (137306550-137306761) | |
| 455-628, gnl|Mm7|chr7 (137306566-137306739) | |
| 455-628, gnl|monDom2|scaffold_4 (126312781-126312951) | |
| 455-628, gnl|oryCun1|scaffold_168348 (1016-1224) | |
| 455-628, gnl|panTro1|chr9 (289872-290081) | |
| 455-628, gnl|rn3|chr1 (201200242-201200451) | |
| 455-628, gnl|tetNig1|chrUn_random (110387703-110387893) | |
| 455-628, gnl|xenTro1|scaffold_357 (201614-201810) | |
| 709-834, gnl|bosTau2|chr29 (45501955-45502080) | |
| 709-834, gnl|canFam2|chr18 (28387076-28387279) | |
| 709-834, gnl|danRer3|chr25 (7217697-7217533) | |
| 709-834, gnl|dasNov1|scaffold_76565 (3995-4181) | |
| 709-834, gnl|echTel1|scaffold_281413 (30500-30334) | |
| 709-834, gnl|fr1|chrUn (23900575-23900409) | |
| 709-834, gnl|hg17|chr11 (238896-239074) | |
| 709-834, gnl|Hg17|chr11 (238932-239057) | |
| 709-834, gnl|loxAfr1|scaffold_50480 (4287-4462) | |
| 709-834, gnl|mm7|chr7 (137307718-137307893) | |
| 709-834, gnl|Mm7|chr7 (137307758-137307883) | |
| 709-834, gnl|monDom2|scaffold_4 (126313031-126313181) | |
| 709-834, gnl|oryCun1|scaffold_168348 (1950-2119) | |
| 709-834, gnl|panTro1|chr9 (291508-291686) | |
| 709-834, gnl|rn3|chr1 (201201413-201201582) | |
| 709-834, gnl|xenTro1|scaffold_357 (202284-202465) | |
| 1087-1445, gnl|bosTau2|chr29 (45504116-45504480) | |
| 1087-1445, gnl|Hg17|chr11 (242494-242841) | |
| 1087-1445, gnl|Mm7|chr7 (137315446-137315802) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| cty (0.5204) | |
| cly (0.482567) | |
| fty (0.351679) | |
| eje (0.296501) | |
| cst (0.280073) | |
| che (0.272628) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.5204) | |
| cly (0.482567) | |
| fty (0.351679) | |
| eje (0.296501) | |
| cst (0.280073) | |
| che (0.272628) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) |