Non-Coding RNA Search

Ss1.1-Tes1-TES01B030015.5

Sequence:


               
               CAGCAGGAGTACCTGCGCCGGAAGAGCAGCAGATCCTGGAGGAGCAGGGCCTGGGGAAGC
CCAAGGCCAGGCCCAAGAAGCCACGGCCCAAGTCCGTCCATCGCGAGGAGCCGAGTGGCG
ACTCCGGACCCAAGAGCGCCTCCACCCCCGACAACCTGAGCCGGGCCCTGTCGGGCTCCA
GCCTGTCCTTGGCCTCGGCCACGACCACGGAGCCCGAGAGCGTCCACTCGGGGGGCACGC
CTTCCCAGCGAGTTGAGTCACTGGAAGCCTTGCCCATCTTGAGCCGCAACCCCAGCAGGA
GCACGGACAGAGACTGGGAGACGGCGTCCGCGGCCTCCTCCCTCGCCTCGGTGGCCGAGT
ACACAGGTCCCAAGCTCTTTAAGGAGCCCAGCAGCAAATCAAACAAACCGATTATTCATA
ACGCCATCTCCCATTGCTGTCTGGCTGGAAAAGTGAATGAACCCCACAAGAATTCAATAC
TGGAGGAGCTGGAGAAGTGTGACGCCAATCACTACATCATACTGTTTCGCGACGCTGGCT
GCCAGTTCAGGGCACTTTACTGCTACTATCCCGACACTGAGGAAATCTACAAACTGACGG
GCACGGGGCCAAAGAGCATCACCAAGAAGATGATCGACAAGCTGTACAAGTACAGCTCCG
ACCGGAAACAGTTCAACCTGATCCCGGCCAAAACCATGTCCGTCAGTGTGGACGCACTCA
CCATCCACAGCCACTTGTGGCAGCCCAAGCGGCCCGCGGTGCCAAAGAAGACCCAGACTC
GTAAATGACCCCGGTGCGGGCAGGAGCGAGGACATGCCGGCCGATCGATATTTATTATGT
TCATCCTTTTGGGTACGAAGTGTGCAGAATCACAGACCTTTTTCAAAGAGGCTTCTGGAC
CCGAGGAAACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAGGAGTACCTGCGCCGGAAGAGCAGCAGATCCTGGAGGAGCAGGGCCTGGGGAAGC
CCAAGGCCAGGCCCAAGAAGCCACGGCCCAAGTCCGTCCATCGCGAGGAGCCGAGTGGCG
ACTCCGGACCCAAGAGCGCCTCCACCCCCGACAACCTGAGCCGGGCCCTGTCGGGCTCCA
GCCTGTCCTTGGCCTCGGCCACGACCACGGAGCCCGAGAGCGTCCACTCGGGGGGCACGC
CTTCCCAGCGAGTTGAGTCACTGGAAGCCTTGCCCATCTTGAGCCGCAACCCCAGCAGGA
GCACGGACAGAGACTGGGAGACGGCGTCCGCGGCCTCCTCCCTCGCCTCGGTGGCCGAGT
ACACAGGTCCCAAGCTCTTTAAGGAGCCCAGCAGCAAATCAAACAAACCGATTATTCATA
ACGCCATCTCCCATTGCTGTCTGGCTGGAAAAGTGAATGAACCCCACAAGAATTCAATAC
TGGAGGAGCTGGAGAAGTGTGACGCCAATCACTACATCATACTGTTTCGCGACGCTGGCT
GCCAGTTCAGGGCACTTTACTGCTACTATCCCGACACTGAGGAAATCTACAAACTGACGG
GCACGGGGCCAAAGAGCATCACCAAGAAGATGATCGACAAGCTGTACAAGTACAGCTCCG
ACCGGAAACAGTTCAACCTGATCCCGGCCAAAACCATGTCCGTCAGTGTGGACGCACTCA
CCATCCACAGCCACTTGTGGCAGCCCAAGCGGCCCGCGGTGCCAAAGAAGACCCAGACTC
GTAAATGACCCCGGTGCGGGCAGGAGCGAGGACATGCCGGCCGATCGATATTTATTATGT
TCATCCTTTTGGGTACGAAGTGTGCAGAATCACAGACCTTTTTCAAAGAGGCTTCTGGAC
CCGAGGAAACCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6WG72_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6WG72_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               639-758, - strand, RNAz p=0.999153

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               639-758, - strand, RNAz p=0.999153

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-165, gnl|bosTau2|chr11 (85910992-85910831)
               

               
               2-165, gnl|Hg17|chr9 (135936345-135936184)
               

               
               2-165, gnl|Mm7|chr2 (25943307-25943155)
               


               
               280-900, gnl|bosTau2|chr11 (85906236-85905616)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-165, gnl|bosTau2|chr11 (85910992-85910831)
               

               
               2-165, gnl|Hg17|chr9 (135936345-135936184)
               

               
               2-165, gnl|Mm7|chr2 (25943307-25943155)
               


               
               280-900, gnl|bosTau2|chr11 (85906236-85905616)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)
               

               
               cty (0.10408)

	2-165, gnl\|bosTau2\|chr11 (85910992-85910831)
	2-165, gnl\|Hg17\|chr9 (135936345-135936184)
	2-165, gnl\|Mm7\|chr2 (25943307-25943155)

	280-900, gnl\|bosTau2\|chr11 (85906236-85905616)