Ss1.1-Tes1-TES01B040001.5
|
CCGGCGAGGCCCTGGGCTCCGGAGGCTGGCGCGGCTGATCCTGGCTTGCAGTGGGAGTCA
CGCGGCTTTGCGCGCGGGGCCGGGGTGAGGGTGTTGTCCCACGTCCGGCCGCCGCGCGTG
ACCGCGGTCCCTGCCTCCCGCCAGCCTCGCCGCGATGCCCTTGCACAAGGTCCCTGTCGG
CCTGTGGAAGCAGCTCCGGCTGTGGGAGGGCATCTATTCCCGCCTGCCCCGGCACTACCT
GCGCTCCCTGGAGGAGGCGCGGACGCCCACTCCCGTGCACTACAGGCCTCACGGGGCCAA
GTTCAAGATCAACCCCAAGAACTGGCAGCGGGAGCGCGTGGAGGACGTGCCCATTCCGGT
TCACTACCCCCCGGAGTCCCAGCTGGGGCTGTGGGGCGGCGAGGGCTGGGTGCTGGGTCA
CAGATACGTCAACAACGACAAGCTCTCCAAGAGAGTGAGGAAGGTGTGGAAGCCGCAGCT
GTTCCAGCGCGAGCTCTACAGTGAGATCCTGGACAAGCGGTTCACCGTGACCGTGACCAT
GCGCACCCTGGACCTCATCGACCAGGCCTGCGGCTTCGACTTCTACATCCTCAAGACCCC
CAAGGAGGACCTGTGCTCCAAGTTCGGGATGGACCTGAAGCGGGGGATGCTGCTGCGGCT
TGCCCGACAGGACCCCCAGCTGCACCCGGACGACCCCGCCAGGAGGGCGGCCATCTACGA
CAGGTACAAGGCGTTCGTCATCCCCGAGGCAGAGGCCGAGTGGGTTGGCCTGACGTTGGA
CGAGGCCGTGGAGAAGCAGAGGCTCCTGGAGGAGAAGGACCCCATTCCTCTGTTCAAGAT
CTTCGTGGAGGAGCTGCTCGGGCAGCTTCAGCAGCAGGCCCTCTCTGAGCCGGCTGTGGT
GCAGACGAGAGCCAGCAGGAAGTAGCGGGTCGTAACCTGGGCCTCGGCCAAGCTCAGCAC
CCCGGCCCCCGCTGGCAACACGGACAGAGCCCAGGGTGCTGGTGACGGCTGCCTGTGGCC
TTGGGCCAACCCGCGTGTGCGTACTGGCCCTGCAGCTCCCAGCGGGGGTGGTCCTTCCCC
AAGAGGCCTCTTGTTCCAGGATCCCCAGGGGCCTGGGGCCATCTTGCTATCTCTGTGGTC
CCCTCCCTCGGGGGCAGCGTGAGTAAAGTCTGAGTTGGGCTGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGGCGAGGCCCTGGGCTCCGGAGGCTGGCGCGGCTGATCCTGGCTTGCAGTGGGAGTCA
CGCGGCTTTGCGCGCGGGGCCGGGGTGAGGGTGTTGTCCCACGTCCGGCCGCCGCGCGTG
ACCGCGGTCCCTGCCTCCCGCCAGCCTCGCCGCGATGCCCTTGCACAAGGTCCCTGTCGG
CCTGTGGAAGCAGCTCCGGCTGTGGGAGGGCATCTATTCCCGCCTGCCCCGGCACTACCT
GCGCTCCCTGGAGGAGGCGCGGACGCCCACTCCCGTGCACTACAGGCCTCACGGGGCCAA
GTTCAAGATCAACCCCAAGAACTGGCAGCGGGAGCGCGTGGAGGACGTGCCCATTCCGGT
TCACTACCCCCCGGAGTCCCAGCTGGGGCTGTGGGGCGGCGAGGGCTGGGTGCTGGGTCA
CAGATACGTCAACAACGACAAGCTCTCCAAGAGAGTGAGGAAGGTGTGGAAGCCGCAGCT
GTTCCAGCGCGAGCTCTACAGTGAGATCCTGGACAAGCGGTTCACCGTGACCGTGACCAT
GCGCACCCTGGACCTCATCGACCAGGCCTGCGGCTTCGACTTCTACATCCTCAAGACCCC
CAAGGAGGACCTGTGCTCCAAGTTCGGGATGGACCTGAAGCGGGGGATGCTGCTGCGGCT
TGCCCGACAGGACCCCCAGCTGCACCCGGACGACCCCGCCAGGAGGGCGGCCATCTACGA
CAGGTACAAGGCGTTCGTCATCCCCGAGGCAGAGGCCGAGTGGGTTGGCCTGACGTTGGA
CGAGGCCGTGGAGAAGCAGAGGCTCCTGGAGGAGAAGGACCCCATTCCTCTGTTCAAGAT
CTTCGTGGAGGAGCTGCTCGGGCAGCTTCAGCAGCAGGCCCTCTCTGAGCCGGCTGTGGT
GCAGACGAGAGCCAGCAGGAAGTAGCGGGTCGTAACCTGGGCCTCGGCCAAGCTCAGCAC
CCCGGCCCCCGCTGGCAACACGGACAGAGCCCAGGGTGCTGGTGACGGCTGCCTGTGGCC
TTGGGCCAACCCGCGTGTGCGTACTGGCCCTGCAGCTCCCAGCGGGGGTGGTCCTTCCCC
AAGAGGCCTCTTGTTCCAGGATCCCCAGGGGCCTGGGGCCATCTTGCTATCTCTGTGGTC
CCCTCCCTCGGGGGCAGCGTGAGTAAAGTCTGAGTTGGGCTGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
73-442, gnl|bosTau2|chr25 (1488459-1488829) |
|
73-442, gnl|Hg17|chr16 (360313-359932) |
|
73-442, gnl|Mm7|chr17 (24306780-24307089) |
| |
|
588-731, gnl|bosTau2|chr25 (1489821-1489965) |
|
588-731, gnl|canFam2|chr6 (43188825-43188647) |
|
588-731, gnl|danRer3|chr15 (14177038-14177189) |
|
588-731, gnl|dasNov1|scaffold_219522 (308-487) |
|
588-731, gnl|fr1|chrUn (87376112-87375930) |
|
588-731, gnl|galGal2|chr14 (13989651-13989497) |
|
588-731, gnl|hg17|chr16 (358493-358672) |
|
588-731, gnl|Hg17|chr16 (358645-358501) |
|
588-731, gnl|loxAfr1|scaffold_8198 (36932-36753) |
|
588-731, gnl|mm7|chr17 (24308642-24308464) |
|
588-731, gnl|Mm7|chr17 (24308488-24308632) |
|
588-731, gnl|monDom2|scaffold_49 (8758297-8758452) |
|
588-731, gnl|panTro1|chr18 (387502-387681) |
|
588-731, gnl|rheMac2|chr20 (355093-355272) |
|
588-731, gnl|rn3|chr10 (15397380-15397202) |
|
588-731, gnl|tetNig1|chr16 (1646570-1646424) |
|
588-731, gnl|xenTro1|scaffold_289 (699460-699300) |
| |
|
816-1144, gnl|bosTau2|chr25 (1490489-1490810) |
|
816-1144, gnl|Hg17|chr16 (357785-357458) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
73-442, gnl|bosTau2|chr25 (1488459-1488829) |
|
73-442, gnl|Hg17|chr16 (360313-359932) |
|
73-442, gnl|Mm7|chr17 (24306780-24307089) |
| |
|
588-731, gnl|bosTau2|chr25 (1489821-1489965) |
|
588-731, gnl|canFam2|chr6 (43188825-43188647) |
|
588-731, gnl|danRer3|chr15 (14177038-14177189) |
|
588-731, gnl|dasNov1|scaffold_219522 (308-487) |
|
588-731, gnl|fr1|chrUn (87376112-87375930) |
|
588-731, gnl|galGal2|chr14 (13989651-13989497) |
|
588-731, gnl|hg17|chr16 (358493-358672) |
|
588-731, gnl|Hg17|chr16 (358645-358501) |
|
588-731, gnl|loxAfr1|scaffold_8198 (36932-36753) |
|
588-731, gnl|mm7|chr17 (24308642-24308464) |
|
588-731, gnl|Mm7|chr17 (24308488-24308632) |
|
588-731, gnl|monDom2|scaffold_49 (8758297-8758452) |
|
588-731, gnl|panTro1|chr18 (387502-387681) |
|
588-731, gnl|rheMac2|chr20 (355093-355272) |
|
588-731, gnl|rn3|chr10 (15397380-15397202) |
|
588-731, gnl|tetNig1|chr16 (1646570-1646424) |
|
588-731, gnl|xenTro1|scaffold_289 (699460-699300) |
| |
|
816-1144, gnl|bosTau2|chr25 (1490489-1490810) |
|
816-1144, gnl|Hg17|chr16 (357785-357458) |
|
che (0.408942) |
|
fbs (0.350693) |
|
csp (0.322373) |
|
hyp (0.285673) |
|
cga (0.279096) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
pla (0.267344) |
|
eep (0.245128) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
nje (0.16592) |
|
nco (0.161734) |
|
pty (0.142714) |
|
cov (0.132153) |
|
cbr (0.127975) |
|
ese (0.126502) |
|
eru (0.120048) |
|
med (0.116252) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
che (0.408942) |
|
fbs (0.350693) |
|
csp (0.322373) |
|
hyp (0.285673) |
|
cga (0.279096) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
pla (0.267344) |
|
eep (0.245128) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
nje (0.16592) |
|
nco (0.161734) |
|
pty (0.142714) |
|
cov (0.132153) |
|
cbr (0.127975) |
|
ese (0.126502) |
|
eru (0.120048) |
|
med (0.116252) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
