Non-Coding RNA Search

Ss1.1-Tes1-TES01B040046.5

Sequence:


               
               CTCCTGGGCTGCTGTGCTGCGCGGGGTCCCGAGCTCCTAAGCCCTCGATGTCCTTTCCCC
TCTCCTTCTGACCGCGATGGATAATGCTTGCGAGTCGCCCGCGGAAAAAAGTGGAGAAAC
AGGGGAGGCAGATGAGATGGCTGCTGCTCCCGGGGCTCCCGGGGTTACGGACACGGACGG
AATCCCGGAGGAAACGGATGGAGACGGAGATGGGGACTTGAAAGAAACCGCGGCTGAAGA
AGGCGAGCTCAAGAGTCAGGATATCTCAGATTTAACAGCAGTTGAAAGAGAAGACTCATC
GTTACTTGCTCCTGCAGCCAAAAAATTGAAAATAGATACCAAAGAAAAGAAAGAGAAGAA
GCAGAAAGTGGATGAAGATGAAATTCAAAAGATGCAAATCCTGGTTTCTTCTTTTTCTGA
GGAGCAGCTGAACCGTTATGAGATGTACCGCCGGTCAGCCTTCCCCAAGGCAGCCATTAA
AAGGCTGATCCAGTCTATCACTGGCACCTCTGTGTCTCAGAATGTTGTTATTGCAATGTC
TGGTATTTCCAAAGTTTTCGTCGGGGAGGTCGTAGAAGAAGCACTGGATGTGTGTGAGAA
GTGGGGAGAAATGCCACCACTACAACCGAAACATATGAGGGAGGCTGTTCGAAGGTTAAA
GTCGAAGGGGCAGATTCCCAACTCAAAGCACAAAAAAATCATCTTCTTTTAGACTGAAAT
CTAGAAAGACCTATTACTGACGGAAGAAGTGCTGGTTCCAGGCTTCGTATTGCATGAGAC
TTTCTGCACTGGTGCTTTAGTATCTCAGTCCTCCAAGGATTCCATGATGTTTTAATGTCT
TTCTCAAACTCTGATATTCATTACACCTAGAAGAAGGCATGCAGCCTGTTGCCTTGACTT
GGGACCCCTGAGGGCCGTTGAAGGCATCCAGCTCTTACTGGCTAGTTTGAAGAAGGGTAC
ATGGGCCTTAAGCATCTTCTGGATGAGGGTGCTGTTTTCAGAAAGAAAACCTTTCCAAAA
CGGTTGGATGGTTTCACATTGAAGCCTGAAGCTACAATGACTTAGGTTTTTCTTACATCT
GGTTTTAAGTAAATGAAGCAACCGGAAACCCTGGACTTGTGATTCTACCATGAAGGATGT
GGTGAGAGCACAAGTAATGGTTTGGTTTAAGATTCTTCTGTGAATTTTGGCGAGTGGTCA
TTAAACTGTTTTCCTCCTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTGGGCTGCTGTGCTGCGCGGGGTCCCGAGCTCCTAAGCCCTCGATGTCCTTTCCCC
TCTCCTTCTGACCGCGATGGATAATGCTTGCGAGTCGCCCGCGGAAAAAAGTGGAGAAAC
AGGGGAGGCAGATGAGATGGCTGCTGCTCCCGGGGCTCCCGGGGTTACGGACACGGACGG
AATCCCGGAGGAAACGGATGGAGACGGAGATGGGGACTTGAAAGAAACCGCGGCTGAAGA
AGGCGAGCTCAAGAGTCAGGATATCTCAGATTTAACAGCAGTTGAAAGAGAAGACTCATC
GTTACTTGCTCCTGCAGCCAAAAAATTGAAAATAGATACCAAAGAAAAGAAAGAGAAGAA
GCAGAAAGTGGATGAAGATGAAATTCAAAAGATGCAAATCCTGGTTTCTTCTTTTTCTGA
GGAGCAGCTGAACCGTTATGAGATGTACCGCCGGTCAGCCTTCCCCAAGGCAGCCATTAA
AAGGCTGATCCAGTCTATCACTGGCACCTCTGTGTCTCAGAATGTTGTTATTGCAATGTC
TGGTATTTCCAAAGTTTTCGTCGGGGAGGTCGTAGAAGAAGCACTGGATGTGTGTGAGAA
GTGGGGAGAAATGCCACCACTACAACCGAAACATATGAGGGAGGCTGTTCGAAGGTTAAA
GTCGAAGGGGCAGATTCCCAACTCAAAGCACAAAAAAATCATCTTCTTTTAGACTGAAAT
CTAGAAAGACCTATTACTGACGGAAGAAGTGCTGGTTCCAGGCTTCGTATTGCATGAGAC
TTTCTGCACTGGTGCTTTAGTATCTCAGTCCTCCAAGGATTCCATGATGTTTTAATGTCT
TTCTCAAACTCTGATATTCATTACACCTAGAAGAAGGCATGCAGCCTGTTGCCTTGACTT
GGGACCCCTGAGGGCCGTTGAAGGCATCCAGCTCTTACTGGCTAGTTTGAAGAAGGGTAC
ATGGGCCTTAAGCATCTTCTGGATGAGGGTGCTGTTTTCAGAAAGAAAACCTTTCCAAAA
CGGTTGGATGGTTTCACATTGAAGCCTGAAGCTACAATGACTTAGGTTTTTCTTACATCT
GGTTTTAAGTAAATGAAGCAACCGGAAACCCTGGACTTGTGATTCTACCATGAAGGATGT
GGTGAGAGCACAAGTAATGGTTTGGTTTAAGATTCTTCTGTGAATTTTGGCGAGTGGTCA
TTAAACTGTTTTCCTCCTTAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5542112|pdb|1BH9|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5542112|pdb|1BH9|B

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               580-817, + strand, RNAz p=0.995736

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               580-817, + strand, RNAz p=0.995736

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005643, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005643, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               246-396, gnl|bosTau2|chr23 (9030852-9030705)
               

               
               246-396, gnl|Hg17|chr6 (34958837-34958687)
               

               
               246-396, gnl|Mm7|chr17 (26091043-26090893)
               


               
               580-890, gnl|bosTau2|chr23 (9026976-9026683)
               

               
               580-890, gnl|Hg17|chr6 (34954477-34954171)
               

               
               580-890, gnl|Mm7|chr17 (26087422-26087162)
               


               
               899-1160, gnl|bosTau2|chr23 (9026649-9026384)
               

               
               899-1160, gnl|Hg17|chr6 (34954145-34953610)
               

               
               899-1160, gnl|Mm7|chr17 (26087132-26086911)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               246-396, gnl|bosTau2|chr23 (9030852-9030705)
               

               
               246-396, gnl|Hg17|chr6 (34958837-34958687)
               

               
               246-396, gnl|Mm7|chr17 (26091043-26090893)
               


               
               580-890, gnl|bosTau2|chr23 (9026976-9026683)
               

               
               580-890, gnl|Hg17|chr6 (34954477-34954171)
               

               
               580-890, gnl|Mm7|chr17 (26087422-26087162)
               


               
               899-1160, gnl|bosTau2|chr23 (9026649-9026384)
               

               
               899-1160, gnl|Hg17|chr6 (34954145-34953610)
               

               
               899-1160, gnl|Mm7|chr17 (26087132-26086911)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               vin (0.332557)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	246-396, gnl\|bosTau2\|chr23 (9030852-9030705)
	246-396, gnl\|Hg17\|chr6 (34958837-34958687)
	246-396, gnl\|Mm7\|chr17 (26091043-26090893)

	580-890, gnl\|bosTau2\|chr23 (9026976-9026683)
	580-890, gnl\|Hg17\|chr6 (34954477-34954171)
	580-890, gnl\|Mm7\|chr17 (26087422-26087162)

	899-1160, gnl\|bosTau2\|chr23 (9026649-9026384)
	899-1160, gnl\|Hg17\|chr6 (34954145-34953610)
	899-1160, gnl\|Mm7\|chr17 (26087132-26086911)

	vin (0.332557)
	cte (0.29274)
	spl (0.286369)
	thg (0.253582)
	mgp (0.230681)
	fcc (0.197785)
	fty (0.17584)
	fbs (0.175346)
	sin (0.174948)
	duo (0.172801)
	nje (0.16592)
	cje (0.165235)
	tbr (0.154178)
	cag (0.151194)
	liv (0.146284)
	pty (0.142714)
	che (0.136314)
	ssp (0.13552)
	ecc (0.115035)
	spc (0.113366)
	jej (0.0989218)