Non-Coding RNA Search

Ss1.1-Tes1-TES01B050014.5

Sequence:


               
               ATGTGAGGTTTAGGTGCTGCCGGCGCCCGGAAGGTCAGCGTGTGAAGGAGGTGGTGGTAA
CGCGGGTTTCACCCGCTGTTACAGAGGAGCAACGGCCGAGCGGACGATCCCGGCCTGAAG
CAGCGGGGAGAAGCAGACCGGTAGTTTGCTGCAGTACCATGGAGGGCGGTGGAGGAAGCG
GCAACAAAACCACAGGGGGATTGGCCGGCTTTTTCGGAGCCGGCGGAGCTGGCTACTCGC
ACGCGGATCTGGCGGGAGTCCCGCTAACTGGTATGAATCCTCTGTCTCCTTATTTAAATG
TGGATCCACGATATCTTGTGCAGGACACAGATGAGTTTATTTTGCCAACTGGAGCTAATA
AAACCCGGGGCAGATTTGAACTGGCCTTCTTTACCATTGGAGGATGTTGTATGACAGGGG
CTGCATTTGGGGCTGTAAATGGCCTACGGCTAGGATTGAAGGAAACCCAGAACATGGCCT
GGTCCAAACCAAGAAACGTACAGATTTTGAATATGGTGACTAGACAAGGGGCACTTTGGG
CTAATACTCTAGGTTCTCTGGCTTTGCTCTATAGTGCATTTGGTGTCATCATTGAGAAAA
CAAGAGGTGCAGAAGATGACCTTAACACAGTAGCAGCTGGAACCATGACAGGCATGTTAT
ATAAATGTACAGGTGGTCTTCGAGGGGTAGCACGAGGTGGTCTAGCAGGACTAACACTTA
CGAGCCTCTATGCACTATATAATAATTGGGAGCACATGAAAGGCTCCTTACTGCAACAGT
CACTCTGAAGATTCTGCTAGTTTATGAATGGAGGACACTTTAGTAGTCATCCAGACCAAT
TTATAAATCAGTCTGGAGTCATTCACTCTTCTATCTACAATTAGTTTGAGAAATTGGAGA
CTCCAATTTGCTGGGATGAAGATCATGGATAGCTGACCAGGATTGGCACTCCTTCCAGCC
ATGAATGAGTTGAAGCCAAAACCCTCTGGCAGCTGAGTAATGTGGTTCTCTTCTCCTTTG
AAGAAGATCTTGCACCTCTTTTCTCTACTACTCCTTGGAAAACCACTTACTCCCAGAATT
CAGGTCATCTTGTTGTCAATACTGTATCACCACATGTATTCATTTAATGATCCAAGACTG
TAATACTGCCCTGTATTCCCAATAAAGGGTGAAAATAGAACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGAGGTTTAGGTGCTGCCGGCGCCCGGAAGGTCAGCGTGTGAAGGAGGTGGTGGTAA
CGCGGGTTTCACCCGCTGTTACAGAGGAGCAACGGCCGAGCGGACGATCCCGGCCTGAAG
CAGCGGGGAGAAGCAGACCGGTAGTTTGCTGCAGTACCATGGAGGGCGGTGGAGGAAGCG
GCAACAAAACCACAGGGGGATTGGCCGGCTTTTTCGGAGCCGGCGGAGCTGGCTACTCGC
ACGCGGATCTGGCGGGAGTCCCGCTAACTGGTATGAATCCTCTGTCTCCTTATTTAAATG
TGGATCCACGATATCTTGTGCAGGACACAGATGAGTTTATTTTGCCAACTGGAGCTAATA
AAACCCGGGGCAGATTTGAACTGGCCTTCTTTACCATTGGAGGATGTTGTATGACAGGGG
CTGCATTTGGGGCTGTAAATGGCCTACGGCTAGGATTGAAGGAAACCCAGAACATGGCCT
GGTCCAAACCAAGAAACGTACAGATTTTGAATATGGTGACTAGACAAGGGGCACTTTGGG
CTAATACTCTAGGTTCTCTGGCTTTGCTCTATAGTGCATTTGGTGTCATCATTGAGAAAA
CAAGAGGTGCAGAAGATGACCTTAACACAGTAGCAGCTGGAACCATGACAGGCATGTTAT
ATAAATGTACAGGTGGTCTTCGAGGGGTAGCACGAGGTGGTCTAGCAGGACTAACACTTA
CGAGCCTCTATGCACTATATAATAATTGGGAGCACATGAAAGGCTCCTTACTGCAACAGT
CACTCTGAAGATTCTGCTAGTTTATGAATGGAGGACACTTTAGTAGTCATCCAGACCAAT
TTATAAATCAGTCTGGAGTCATTCACTCTTCTATCTACAATTAGTTTGAGAAATTGGAGA
CTCCAATTTGCTGGGATGAAGATCATGGATAGCTGACCAGGATTGGCACTCCTTCCAGCC
ATGAATGAGTTGAAGCCAAAACCCTCTGGCAGCTGAGTAATGTGGTTCTCTTCTCCTTTG
AAGAAGATCTTGCACCTCTTTTCTCTACTACTCCTTGGAAAACCACTTACTCCCAGAATT
CAGGTCATCTTGTTGTCAATACTGTATCACCACATGTATTCATTTAATGATCCAAGACTG
TAATACTGCCCTGTATTCCCAATAAAGGGTGAAAATAGAACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5T1E6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T1E6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-158, + strand, RNAz p=0.981754

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-158, + strand, RNAz p=0.981754

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006327, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006327, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-264, gnl|bosTau2|chr28 (33772546-33772286)
               

               
               2-264, gnl|Hg17|chr10 (51293372-51293115)
               

               
               2-264, gnl|Mm7|chr14 (29631553-29631290)
               


               
               670-1181, gnl|bosTau2|chr28 (33752671-33752165)
               

               
               670-1181, gnl|Hg17|chr10 (51262628-51262111)
               

               
               670-1181, gnl|Mm7|chr14 (29610320-29609833)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-264, gnl|bosTau2|chr28 (33772546-33772286)
               

               
               2-264, gnl|Hg17|chr10 (51293372-51293115)
               

               
               2-264, gnl|Mm7|chr14 (29631553-29631290)
               


               
               670-1181, gnl|bosTau2|chr28 (33752671-33752165)
               

               
               670-1181, gnl|Hg17|chr10 (51262628-51262111)
               

               
               670-1181, gnl|Mm7|chr14 (29610320-29609833)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               tbr (0.770891)
               

               
               hea (0.408998)
               

               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               nco (0.323468)
               

               
               hlv (0.278513)
               

               
               ebs (0.236602)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.770891)
               

               
               hea (0.408998)
               

               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               nco (0.323468)
               

               
               hlv (0.278513)
               

               
               ebs (0.236602)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	2-264, gnl\|bosTau2\|chr28 (33772546-33772286)
	2-264, gnl\|Hg17\|chr10 (51293372-51293115)
	2-264, gnl\|Mm7\|chr14 (29631553-29631290)

	670-1181, gnl\|bosTau2\|chr28 (33752671-33752165)
	670-1181, gnl\|Hg17\|chr10 (51262628-51262111)
	670-1181, gnl\|Mm7\|chr14 (29610320-29609833)

	tbr (0.770891)
	hea (0.408998)
	elu (0.385356)
	fbs (0.350693)
	nco (0.323468)
	hlv (0.278513)
	ebs (0.236602)
	mas (0.210305)
	cty (0.20816)
	fcc (0.197785)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	sag (0.182715)
	sin (0.174948)
	lin (0.145603)
	spl (0.143184)
	nca (0.136874)
	ssp (0.13552)
	ste (0.135208)
	nmm (0.132802)
	ese (0.126502)
	spc (0.113366)
	nbm (0.0993246)