Ss1.1-Tes1-TES01B050015.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGCAGGCGCAGGCGCAGGGACGCGAGCAGCAGAACCGACCCCCAAGGCCCCGCGAGCA GTCTGGCGCGATGCCGTATGCCAACCAGCCAACCGTGCGGATCACCGAGCTCACCGACGA GAATGTCAAGTTCATTATCGAGAATACGGACCTGGCGGTGGCGAATTCTATCCGGAGGGT CTTCATCGCTGAGGTGCCCATAATAGCAATTGACTGGGTTCAGATTGATGCCAATTCCTC AGTCCTTCACGACGAGTTCATTGCTCACAGGCTTGGATTAATCCCCCTCACTAGTGACGA CATTGTGGACAAGCTGCAGTACTCCCGGGACTGCACTTGTGAGGAGTTCTGCCCCGAGTG CTCGGTGGAGTTCACCCTCGATGTGCGGTGCAACGAAGACCAGACGCGTCACGTCACATC CCGAGACCTCATCTCCAACAGCCCCCGGGTCATTCCGGTGACATCCCGGAACCGAGATAA TGACCCCAGTGACTACGTGGAGCAGGACGACATCCTCATCGTCAAGCTGAGGAAGGGCCA GGAGCTGAGACTTCGCGCCTACGCCAAAAAGGGCTTTGGCAAGGAACACGCCAAGTGGAA CCCCACTGCAGGGGTGGCTTTTGAATATGATCCCGACAATGCCCTGAGGCACACGGTGTA CCCCAAGCCGGAGGAATGGCCAAAGAGTGAGTACTCGGAGCTGGATGAGGATGAGTCACA GGCGCCCTACGACCCCAACGGCAAGCCAGAGAGGTTTTACTACAACGTGGAATCTTGTGG CTCTCTGCGCCCTGAAACCATTGTCCTCTCAGCACTTTCTGGATTAAAGAAGAAACTGAG TGACTTACAGACCCAATTAAGCCATGAGATCCAGAGTGACGTCCTGACCATAAACTAGCC GCAGCTCACCTGTCTCAGCAGAAACAGCTCTTGAATTTCAGGCCTCTCCTGAGACTTTTG CTCCTGGGGACTGGACAGCTGTTGCTCAAGCTTCCTGGCACACCTGCAGTACTGGCTAGA AAGGTAGCGGTGGGGGAGGGCAGGCCATCCCAGGCTGGCACCGTCGCAGGTTGCCGGGGG TGCCACTGCTGTCGGAGGCGGAAAAGTCTCCTACATCCATTGAGCATCCGTGGCCCTGCC TGCTGATGGGCAGTGGTGCTCTCCACAACGCCGGATGTGCCTCCAGGGGCCCTGGCGTCC CCCGGTTGAGAACCACTGAGCTGGACTCTCCTTTTCTGATCAGTTCAGTGCTTTAGTTTG AATCCTTCCTGTCCACAAATTGGGATTTCGCTCTTGTACCTCAGGCTTCTGTGTTAGGAT TGACTCTAGAATTCTTTCTCAGGCCGCCTGCAGGTCCTTCCAGTCCCGGCCCTGACCCGC GTACTGGCACTTCTCTCATATTCCCAGGAGTCCCTAACTTGAGACCCTTTGAGAACACTG TTAGACCCAGGCTGTCCCCCTCTCCCCATCAGTTATGAACTTAACGACAGTGGCCCATTT ATTTGTCAGGAGGGCAGGGGACTTAAGGAAAGGTTGGCCTTGCCCCTGGCTCAGCCTTAG AGGTAGGAACATACCCAAAGCAGTTAATTAGGCAGCCTGGCCAGAGAAGCCTGGAGAAAA TCAGAGACCTAGTACAGAAAGGAAGGGATGTGTATGAGTTGTCTTTTAAAAGTTTTTATT TTTGGCAATAAAGAGCACAACGTCATCTCAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGCAGGCGCAGGCGCAGGGACGCGAGCAGCAGAACCGACCCCCAAGGCCCCGCGAGCA GTCTGGCGCGATGCCGTATGCCAACCAGCCAACCGTGCGGATCACCGAGCTCACCGACGA GAATGTCAAGTTCATTATCGAGAATACGGACCTGGCGGTGGCGAATTCTATCCGGAGGGT CTTCATCGCTGAGGTGCCCATAATAGCAATTGACTGGGTTCAGATTGATGCCAATTCCTC AGTCCTTCACGACGAGTTCATTGCTCACAGGCTTGGATTAATCCCCCTCACTAGTGACGA CATTGTGGACAAGCTGCAGTACTCCCGGGACTGCACTTGTGAGGAGTTCTGCCCCGAGTG CTCGGTGGAGTTCACCCTCGATGTGCGGTGCAACGAAGACCAGACGCGTCACGTCACATC CCGAGACCTCATCTCCAACAGCCCCCGGGTCATTCCGGTGACATCCCGGAACCGAGATAA TGACCCCAGTGACTACGTGGAGCAGGACGACATCCTCATCGTCAAGCTGAGGAAGGGCCA GGAGCTGAGACTTCGCGCCTACGCCAAAAAGGGCTTTGGCAAGGAACACGCCAAGTGGAA CCCCACTGCAGGGGTGGCTTTTGAATATGATCCCGACAATGCCCTGAGGCACACGGTGTA CCCCAAGCCGGAGGAATGGCCAAAGAGTGAGTACTCGGAGCTGGATGAGGATGAGTCACA GGCGCCCTACGACCCCAACGGCAAGCCAGAGAGGTTTTACTACAACGTGGAATCTTGTGG CTCTCTGCGCCCTGAAACCATTGTCCTCTCAGCACTTTCTGGATTAAAGAAGAAACTGAG TGACTTACAGACCCAATTAAGCCATGAGATCCAGAGTGACGTCCTGACCATAAACTAGCC GCAGCTCACCTGTCTCAGCAGAAACAGCTCTTGAATTTCAGGCCTCTCCTGAGACTTTTG CTCCTGGGGACTGGACAGCTGTTGCTCAAGCTTCCTGGCACACCTGCAGTACTGGCTAGA AAGGTAGCGGTGGGGGAGGGCAGGCCATCCCAGGCTGGCACCGTCGCAGGTTGCCGGGGG TGCCACTGCTGTCGGAGGCGGAAAAGTCTCCTACATCCATTGAGCATCCGTGGCCCTGCC TGCTGATGGGCAGTGGTGCTCTCCACAACGCCGGATGTGCCTCCAGGGGCCCTGGCGTCC CCCGGTTGAGAACCACTGAGCTGGACTCTCCTTTTCTGATCAGTTCAGTGCTTTAGTTTG AATCCTTCCTGTCCACAAATTGGGATTTCGCTCTTGTACCTCAGGCTTCTGTGTTAGGAT TGACTCTAGAATTCTTTCTCAGGCCGCCTGCAGGTCCTTCCAGTCCCGGCCCTGACCCGC GTACTGGCACTTCTCTCATATTCCCAGGAGTCCCTAACTTGAGACCCTTTGAGAACACTG TTAGACCCAGGCTGTCCCCCTCTCCCCATCAGTTATGAACTTAACGACAGTGGCCCATTT ATTTGTCAGGAGGGCAGGGGACTTAAGGAAAGGTTGGCCTTGCCCCTGGCTCAGCCTTAG AGGTAGGAACATACCCAAAGCAGTTAATTAGGCAGCCTGGCCAGAGAAGCCTGGAGAAAA TCAGAGACCTAGTACAGAAAGGAAGGGATGTGTATGAGTTGTCTTTTAAAAGTTTTTATT TTTGGCAATAAAGAGCACAACGTCATCTCAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 562-679, - strand, RNAz p=0.558924 | |
| 1052-1171, + strand, RNAz p=0.967868 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 562-679, - strand, RNAz p=0.558924 | |
| 1052-1171, + strand, RNAz p=0.967868 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_032940, + |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 9-157, gnl|bosTau2|chr18 (21479223-21479073) | |
| 9-157, gnl|Hg17|chr16 (56054071-56054224) | |
| 9-157, gnl|Mm7|chr8 (93446544-93446686) | |
| 328-459, gnl|bosTau2|chr18 (21473533-21473402) | |
| 328-459, gnl|canFam2|chr2 (61836258-61836175) | |
| 328-459, gnl|canFam2|chr2 (61836283-61836094) | |
| 328-459, gnl|danRer3|chr25 (16790791-16790708) | |
| 328-459, gnl|danRer3|chr25 (16790811-16790657) | |
| 328-459, gnl|dasNov1|scaffold_10337 (39355-39174) | |
| 328-459, gnl|dasNov1|scaffold_70467 (6656-6571) | |
| 328-459, gnl|echTel1|scaffold_169999 (6340-6253) | |
| 328-459, gnl|echTel1|scaffold_280101 (12214-12392) | |
| 328-459, gnl|fr1|chrUn (201353816-201353733) | |
| 328-459, gnl|fr1|chrUn (201353841-201353661) | |
| 328-459, gnl|galGal2|chr11 (533065-532982) | |
| 328-459, gnl|galGal2|chr11 (533079-532928) | |
| 328-459, gnl|hg17|chr16 (56060557-56060743) | |
| 328-459, gnl|Hg17|chr16 (56060577-56060708) | |
| 328-459, gnl|hg17|chr21 (15051987-15052068) | |
| 328-459, gnl|mm7|chr11 (9102347-9102264) | |
| 328-459, gnl|mm7|chr8 (93450735-93450894) | |
| 328-459, gnl|Mm7|chr8 (93450754-93450885) | |
| 328-459, gnl|monDom2|scaffold_35 (24485051-24485134) | |
| 328-459, gnl|monDom2|scaffold_35 (24485030-24485215) | |
| 328-459, gnl|oryCun1|scaffold_188132 (459-542) | |
| 328-459, gnl|oryCun1|scaffold_188132 (439-615) | |
| 328-459, gnl|panTro1|chr18 (50169565-50169751) | |
| 328-459, gnl|panTro1|chr22 (15070087-15070168) | |
| 328-459, gnl|rheMac2|chr20 (55816506-55816692) | |
| 328-459, gnl|rheMac2|chr3 (32133416-32133336) | |
| 328-459, gnl|rn3|chr19 (10604193-10604110) | |
| 328-459, gnl|rn3|chr19 (10604214-10604054) | |
| 328-459, gnl|tetNig1|chr13 (685586-685669) | |
| 328-459, gnl|tetNig1|chr13 (685566-685721) | |
| 509-679, gnl|bosTau2|chr18 (21472841-21472671) | |
| 509-679, gnl|canFam2|chr2 (61835473-61835305) | |
| 509-679, gnl|canFam2|chr2 (61835514-61835298) | |
| 509-679, gnl|danRer3|chr25 (16787547-16787379) | |
| 509-679, gnl|danRer3|chr25 (16787590-16787372) | |
| 509-679, gnl|dasNov1|scaffold_70467 (6493-6335) | |
| 509-679, gnl|dasNov1|scaffold_70467 (6495-6329) | |
| 509-679, gnl|echTel1|scaffold_169999 (6155-5998) | |
| 509-679, gnl|echTel1|scaffold_280101 (12864-13084) | |
| 509-679, gnl|fr1|chrUn (201353454-201353286) | |
| 509-679, gnl|fr1|chrUn (201353476-201353279) | |
| 509-679, gnl|galGal2|chr11 (531386-531218) | |
| 509-679, gnl|galGal2|chr11 (531406-531211) | |
| 509-679, gnl|hg17|chr16 (56061333-56061549) | |
| 509-679, gnl|Hg17|chr16 (56061373-56061543) | |
| 509-679, gnl|hg17|chr21 (15052157-15052325) | |
| 509-679, gnl|mm7|chr11 (9102166-9102008) | |
| 509-679, gnl|mm7|chr8 (93451525-93451740) | |
| 509-679, gnl|Mm7|chr8 (93451564-93451734) | |
| 509-679, gnl|monDom2|scaffold_35 (24485850-24486018) | |
| 509-679, gnl|monDom2|scaffold_35 (24485817-24486025) | |
| 509-679, gnl|oryCun1|scaffold_188132 (1165-1333) | |
| 509-679, gnl|oryCun1|scaffold_188132 (1127-1340) | |
| 509-679, gnl|panTro1|chr18 (50170341-50170557) | |
| 509-679, gnl|panTro1|chr22 (15070257-15070425) | |
| 509-679, gnl|rheMac2|chr20 (55817290-55817506) | |
| 509-679, gnl|rheMac2|chr3 (32133247-32133081) | |
| 509-679, gnl|rn3|chr19 (10603505-10603337) | |
| 509-679, gnl|rn3|chr19 (10603545-10603330) | |
| 509-679, gnl|tetNig1|chr13 (685921-686089) | |
| 509-679, gnl|tetNig1|chr13 (685899-686096) | |
| 509-679, gnl|xenTro1|scaffold_264 (556473-556305) | |
| 509-679, gnl|xenTro1|scaffold_264 (556477-556299) | |
| 752-1473, gnl|bosTau2|chr18 (21471860-21471131) | |
| 752-1473, gnl|Hg17|chr16 (56062386-56063077) | |
| 1510-1703, gnl|bosTau2|chr18 (21471043-21470848) | |
| 1510-1703, gnl|Hg17|chr16 (56063170-56063416) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-157, gnl|bosTau2|chr18 (21479223-21479073) | |
| 9-157, gnl|Hg17|chr16 (56054071-56054224) | |
| 9-157, gnl|Mm7|chr8 (93446544-93446686) | |
| 328-459, gnl|bosTau2|chr18 (21473533-21473402) | |
| 328-459, gnl|canFam2|chr2 (61836258-61836175) | |
| 328-459, gnl|canFam2|chr2 (61836283-61836094) | |
| 328-459, gnl|danRer3|chr25 (16790791-16790708) | |
| 328-459, gnl|danRer3|chr25 (16790811-16790657) | |
| 328-459, gnl|dasNov1|scaffold_10337 (39355-39174) | |
| 328-459, gnl|dasNov1|scaffold_70467 (6656-6571) | |
| 328-459, gnl|echTel1|scaffold_169999 (6340-6253) | |
| 328-459, gnl|echTel1|scaffold_280101 (12214-12392) | |
| 328-459, gnl|fr1|chrUn (201353816-201353733) | |
| 328-459, gnl|fr1|chrUn (201353841-201353661) | |
| 328-459, gnl|galGal2|chr11 (533065-532982) | |
| 328-459, gnl|galGal2|chr11 (533079-532928) | |
| 328-459, gnl|hg17|chr16 (56060557-56060743) | |
| 328-459, gnl|Hg17|chr16 (56060577-56060708) | |
| 328-459, gnl|hg17|chr21 (15051987-15052068) | |
| 328-459, gnl|mm7|chr11 (9102347-9102264) | |
| 328-459, gnl|mm7|chr8 (93450735-93450894) | |
| 328-459, gnl|Mm7|chr8 (93450754-93450885) | |
| 328-459, gnl|monDom2|scaffold_35 (24485051-24485134) | |
| 328-459, gnl|monDom2|scaffold_35 (24485030-24485215) | |
| 328-459, gnl|oryCun1|scaffold_188132 (459-542) | |
| 328-459, gnl|oryCun1|scaffold_188132 (439-615) | |
| 328-459, gnl|panTro1|chr18 (50169565-50169751) | |
| 328-459, gnl|panTro1|chr22 (15070087-15070168) | |
| 328-459, gnl|rheMac2|chr20 (55816506-55816692) | |
| 328-459, gnl|rheMac2|chr3 (32133416-32133336) | |
| 328-459, gnl|rn3|chr19 (10604193-10604110) | |
| 328-459, gnl|rn3|chr19 (10604214-10604054) | |
| 328-459, gnl|tetNig1|chr13 (685586-685669) | |
| 328-459, gnl|tetNig1|chr13 (685566-685721) | |
| 509-679, gnl|bosTau2|chr18 (21472841-21472671) | |
| 509-679, gnl|canFam2|chr2 (61835473-61835305) | |
| 509-679, gnl|canFam2|chr2 (61835514-61835298) | |
| 509-679, gnl|danRer3|chr25 (16787547-16787379) | |
| 509-679, gnl|danRer3|chr25 (16787590-16787372) | |
| 509-679, gnl|dasNov1|scaffold_70467 (6493-6335) | |
| 509-679, gnl|dasNov1|scaffold_70467 (6495-6329) | |
| 509-679, gnl|echTel1|scaffold_169999 (6155-5998) | |
| 509-679, gnl|echTel1|scaffold_280101 (12864-13084) | |
| 509-679, gnl|fr1|chrUn (201353454-201353286) | |
| 509-679, gnl|fr1|chrUn (201353476-201353279) | |
| 509-679, gnl|galGal2|chr11 (531386-531218) | |
| 509-679, gnl|galGal2|chr11 (531406-531211) | |
| 509-679, gnl|hg17|chr16 (56061333-56061549) | |
| 509-679, gnl|Hg17|chr16 (56061373-56061543) | |
| 509-679, gnl|hg17|chr21 (15052157-15052325) | |
| 509-679, gnl|mm7|chr11 (9102166-9102008) | |
| 509-679, gnl|mm7|chr8 (93451525-93451740) | |
| 509-679, gnl|Mm7|chr8 (93451564-93451734) | |
| 509-679, gnl|monDom2|scaffold_35 (24485850-24486018) | |
| 509-679, gnl|monDom2|scaffold_35 (24485817-24486025) | |
| 509-679, gnl|oryCun1|scaffold_188132 (1165-1333) | |
| 509-679, gnl|oryCun1|scaffold_188132 (1127-1340) | |
| 509-679, gnl|panTro1|chr18 (50170341-50170557) | |
| 509-679, gnl|panTro1|chr22 (15070257-15070425) | |
| 509-679, gnl|rheMac2|chr20 (55817290-55817506) | |
| 509-679, gnl|rheMac2|chr3 (32133247-32133081) | |
| 509-679, gnl|rn3|chr19 (10603505-10603337) | |
| 509-679, gnl|rn3|chr19 (10603545-10603330) | |
| 509-679, gnl|tetNig1|chr13 (685921-686089) | |
| 509-679, gnl|tetNig1|chr13 (685899-686096) | |
| 509-679, gnl|xenTro1|scaffold_264 (556473-556305) | |
| 509-679, gnl|xenTro1|scaffold_264 (556477-556299) | |
| 752-1473, gnl|bosTau2|chr18 (21471860-21471131) | |
| 752-1473, gnl|Hg17|chr16 (56062386-56063077) | |
| 1510-1703, gnl|bosTau2|chr18 (21471043-21470848) | |
| 1510-1703, gnl|Hg17|chr16 (56063170-56063416) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| elu (1.15607) | |
| cbe (0.717703) | |
| cje (0.495704) | |
| vin (0.332557) | |
| nco (0.323468) | |
| sme (0.305437) | |
| cst (0.280073) | |
| cga (0.279096) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| hea (0.204499) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| csp (0.161186) | |
| eli (0.151814) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (1.15607) | |
| cbe (0.717703) | |
| cje (0.495704) | |
| vin (0.332557) | |
| nco (0.323468) | |
| sme (0.305437) | |
| cst (0.280073) | |
| cga (0.279096) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| hea (0.204499) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| csp (0.161186) | |
| eli (0.151814) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) |