Ss1.1-Tes1-TES01B060004.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCCCGCGGCGCAGAGACTAGCTGGGGGGACTCGGAGCGCCCGGACCTTTTGGCTTAAC GCTCGCTCTCGGCGTCTGCAGCTCCCTCTGCTTATTCCTCGGGCGGCGACCTTCAGCGGC CGGAAATTCACCATGTCTATCCTCAAGATCCACGCCAGGGAGATCTTCGACTCTCGCGGG AACCCCACTGTTGAGGTCGATCTGCACACCGCAAAAGGTCTCTTCCGAGCTGCTGTGCCC AGTGGGGCCTCAACTGGGATCTACGAGGCCCTCGAGCTCCGGGACAATGACAAGACGCGC TACATGGGGAAAGGTGTCTCAAAGGCTGTTGAGCACATCAATAAAACTATTGCGCCTGCC CTGGTTAGCAAGAAACTGAACGTCGTGGAGCAGGAGAAGATCGACAAGCTGATGATTGAG ATGGACGGCACGGAGAACAAGTCCAAGTTTGGTGCCAACGCCATCCTGGGCGTGTCCCTG GCCGTCTGCAAGGCTGGCGCTGTTGAGAAGGGGGTGCCCCTGTACCGCCACATCGCTGAC CTGGCTGGCAATGCCGAGGTCATCCTGCCAGTCCCGGCTTTCAACGTCATCAACGGTGGC TCCCACGCCGGCAACAAGCTGGCCATGCAGGAGTTCATGATCCTCCCCGTCGGGGCCGAA ACCTTCCGGGAGGCCATGCGCATCGGGGCTGAGGTCTACCACAACCTGAAGAACGTCATC AAGGAGAAATACGGGAAGGACGCCACCAACGTGGGCGATGAGGGCGGGTTTGCTCCCAAC ATCCTGGAGAACAAAGAAGCCCTGGAGCTGCTGAAGAACGCCATCGGGAAGGCCGGCTAC ACCGACAAGGTCGTCATCGGCATGGACGTGGCCGCCTCGGAGTTCTACAGGTCGGGCAAG TACGACCTGGACTTCAAGTCACCCGACGACCCCAGCAGGTACATCTCACCGGACCAGCTG GCCGACCTGTACAAGTCCTTCATCAGGGACTATCCAGTGGTGTCCATCGAGGACCCCTTC GACCAGGATGACTGGGAAGCCTGGCAAAAGTTCACTGGCAGCGCGGGAATCCAGGTGGTG GGCGACGACCTCACGGTGACCAACCCCAAGAGGATTTCCAAGGCCGTGGCTGAGAAATCG TGCAACTGCCTCCTGCTCAAAGTCAACCAGATCGGCTCGGTGACCGAGTCCCTGCAGGCG TGCAAGCTGGCGCAGTCCAACGGCTGGGGCGTCATGGTGTCACATCGCTCCGGGGAGACC GAAGACACCTTCATCGCTGACCTGGTGGTGGGGCTCTGCACCGGGCAGATCAAGACTGGC GCACCTTGCCGATCCGAGCGCTTGGCCAAGTACAACCAGATCCTCAGAATCGAAGAGGAA CTGGGCAGCAAGGCCAAGTTTGCCGGCAGGAACTTCAGAAACCCCCTCGCCAAGTAAGCT CTGGGCGGCCGGCCCTGAGCCCCGTGGTCACTCGTCGGCTCATCAGACCTGCGCTCCATG TCGCTCGGCAGCTCGAGGCCCCGCCAGTGCTTGTGGGGCCTCCAGTAGTCGACGCCCCCT CCCCTCCCTGTGATGTCTCACTGCTTCCTTAGACCTGCTGCCGAAGCCGAGCTCCACCAT CTGGAACCTGCTGGAAGCCCTAGCTCAGTAATCATGTGATTGGCCCAAATCATTGTTCTT CTCACCTCGCTTCCACCAAGTGTCTGGAGCCATGTGTGCCCACATTGCGGTCTCCGAGGT GGCCTGGGGCAAGATCCCCAGCGGTTTTGTGTGCAAAATAAAAAAGGCCTCAGTGACCCG AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCCCGCGGCGCAGAGACTAGCTGGGGGGACTCGGAGCGCCCGGACCTTTTGGCTTAAC GCTCGCTCTCGGCGTCTGCAGCTCCCTCTGCTTATTCCTCGGGCGGCGACCTTCAGCGGC CGGAAATTCACCATGTCTATCCTCAAGATCCACGCCAGGGAGATCTTCGACTCTCGCGGG AACCCCACTGTTGAGGTCGATCTGCACACCGCAAAAGGTCTCTTCCGAGCTGCTGTGCCC AGTGGGGCCTCAACTGGGATCTACGAGGCCCTCGAGCTCCGGGACAATGACAAGACGCGC TACATGGGGAAAGGTGTCTCAAAGGCTGTTGAGCACATCAATAAAACTATTGCGCCTGCC CTGGTTAGCAAGAAACTGAACGTCGTGGAGCAGGAGAAGATCGACAAGCTGATGATTGAG ATGGACGGCACGGAGAACAAGTCCAAGTTTGGTGCCAACGCCATCCTGGGCGTGTCCCTG GCCGTCTGCAAGGCTGGCGCTGTTGAGAAGGGGGTGCCCCTGTACCGCCACATCGCTGAC CTGGCTGGCAATGCCGAGGTCATCCTGCCAGTCCCGGCTTTCAACGTCATCAACGGTGGC TCCCACGCCGGCAACAAGCTGGCCATGCAGGAGTTCATGATCCTCCCCGTCGGGGCCGAA ACCTTCCGGGAGGCCATGCGCATCGGGGCTGAGGTCTACCACAACCTGAAGAACGTCATC AAGGAGAAATACGGGAAGGACGCCACCAACGTGGGCGATGAGGGCGGGTTTGCTCCCAAC ATCCTGGAGAACAAAGAAGCCCTGGAGCTGCTGAAGAACGCCATCGGGAAGGCCGGCTAC ACCGACAAGGTCGTCATCGGCATGGACGTGGCCGCCTCGGAGTTCTACAGGTCGGGCAAG TACGACCTGGACTTCAAGTCACCCGACGACCCCAGCAGGTACATCTCACCGGACCAGCTG GCCGACCTGTACAAGTCCTTCATCAGGGACTATCCAGTGGTGTCCATCGAGGACCCCTTC GACCAGGATGACTGGGAAGCCTGGCAAAAGTTCACTGGCAGCGCGGGAATCCAGGTGGTG GGCGACGACCTCACGGTGACCAACCCCAAGAGGATTTCCAAGGCCGTGGCTGAGAAATCG TGCAACTGCCTCCTGCTCAAAGTCAACCAGATCGGCTCGGTGACCGAGTCCCTGCAGGCG TGCAAGCTGGCGCAGTCCAACGGCTGGGGCGTCATGGTGTCACATCGCTCCGGGGAGACC GAAGACACCTTCATCGCTGACCTGGTGGTGGGGCTCTGCACCGGGCAGATCAAGACTGGC GCACCTTGCCGATCCGAGCGCTTGGCCAAGTACAACCAGATCCTCAGAATCGAAGAGGAA CTGGGCAGCAAGGCCAAGTTTGCCGGCAGGAACTTCAGAAACCCCCTCGCCAAGTAAGCT CTGGGCGGCCGGCCCTGAGCCCCGTGGTCACTCGTCGGCTCATCAGACCTGCGCTCCATG TCGCTCGGCAGCTCGAGGCCCCGCCAGTGCTTGTGGGGCCTCCAGTAGTCGACGCCCCCT CCCCTCCCTGTGATGTCTCACTGCTTCCTTAGACCTGCTGCCGAAGCCGAGCTCCACCAT CTGGAACCTGCTGGAAGCCCTAGCTCAGTAATCATGTGATTGGCCCAAATCATTGTTCTT CTCACCTCGCTTCCACCAAGTGTCTGGAGCCATGTGTGCCCACATTGCGGTCTCCGAGGT GGCCTGGGGCAAGATCCCCAGCGGTTTTGTGTGCAAAATAAAAAAGGCCTCAGTGACCCG AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1480-1629, - strand, RNAz p=0.961935 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1480-1629, - strand, RNAz p=0.961935 |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 216-316, gnl|bosTau2|chr16 (31520510-31520410) | |
| 216-316, gnl|Hg17|chr1 (8866313-8866213) | |
| 216-316, gnl|Mm7|chr4 (149230585-149230685) | |
| 443-575, gnl|bosTau2|chr19 (14843772-14843904) | |
| 443-575, gnl|canFam2|chr5 (34662025-34661883) | |
| 443-575, gnl|danRer3|chr2 (14566110-14565968) | |
| 443-575, gnl|dasNov1|scaffold_60703 (6660-6802) | |
| 443-575, gnl|echTel1|scaffold_289890 (67734-67866) | |
| 443-575, gnl|fr1|chrUn (74957528-74957670) | |
| 443-575, gnl|galGal2|chr1 (71381299-71381440) | |
| 443-575, gnl|hg17|chr17 (4797751-4797893) | |
| 443-575, gnl|Hg17|chr17 (4797753-4797885) | |
| 443-575, gnl|loxAfr1|scaffold_85475 (3498-3640) | |
| 443-575, gnl|mm7|chr11 (70740600-70740742) | |
| 443-575, gnl|Mm7|chr11 (70740602-70740734) | |
| 443-575, gnl|monDom2|scaffold_66 (3443488-3443346) | |
| 443-575, gnl|oryCun1|scaffold_14019 (8879-9011) | |
| 443-575, gnl|panTro1|chr19 (5126060-5126202) | |
| 443-575, gnl|rheMac2|chr16 (4754675-4754817) | |
| 443-575, gnl|rn3|chr10 (57552468-57552610) | |
| 443-575, gnl|tetNig1|chrUn_random (83981691-83981549) | |
| 443-575, gnl|xenTro1|scaffold_464 (886027-885885) | |
| 576-799, gnl|bosTau2|chr16 (31516643-31516420) | |
| 576-799, gnl|canFam2|chr1 (81475348-81475551) | |
| 576-799, gnl|canFam2|chrX (12244301-12244521) | |
| 576-799, gnl|danRer3|chr22 (35428761-35428570) | |
| 576-799, gnl|danRer3|chr23 (31182818-31182585) | |
| 576-799, gnl|dasNov1|scaffold_27589 (5729-5968) | |
| 576-799, gnl|dasNov1|scaffold_86022 (476-284) | |
| 576-799, gnl|echTel1|scaffold_66085 (5043-4821) | |
| 576-799, gnl|echTel1|scaffold_66085 (5003-4811) | |
| 576-799, gnl|fr1|chrUn (277307631-277307397) | |
| 576-799, gnl|fr1|chrUn (277307583-277307390) | |
| 576-799, gnl|galGal2|chr1 (71382486-71382247) | |
| 576-799, gnl|hg17|chr1 (8860594-8860834) | |
| 576-799, gnl|Hg17|chr1 (8860827-8860604) | |
| 576-799, gnl|hg17|chr2 (202313036-202313233) | |
| 576-799, gnl|loxAfr1|scaffold_33800 (11762-11962) | |
| 576-799, gnl|loxAfr1|scaffold_6718 (73739-73979) | |
| 576-799, gnl|mm7|chr1 (59350613-59350785) | |
| 576-799, gnl|mm7|chr4 (149234891-149234652) | |
| 576-799, gnl|Mm7|chr4 (149234656-149234879) | |
| 576-799, gnl|monDom2|scaffold_148 (817276-817047) | |
| 576-799, gnl|monDom2|scaffold_8 (12949068-12949267) | |
| 576-799, gnl|oryCun1|scaffold_184064 (14445-14205) | |
| 576-799, gnl|oryCun1|scaffold_199389 (110115-110317) | |
| 576-799, gnl|panTro1|chr1 (8867708-8867948) | |
| 576-799, gnl|panTro1|chr13 (92299076-92299273) | |
| 576-799, gnl|rheMac2|chr1 (11905258-11905498) | |
| 576-799, gnl|rheMac2|chr12 (65419357-65419554) | |
| 576-799, gnl|rn3|chr5 (167412660-167412421) | |
| 576-799, gnl|rn3|chr9 (57809555-57809731) | |
| 576-799, gnl|tetNig1|chrUn_random (46515987-46515753) | |
| 576-799, gnl|tetNig1|chrUn_random (46515939-46515747) | |
| 576-799, gnl|xenTro1|scaffold_464 (885499-885731) | |
| 995-1202, gnl|bosTau2|chr16 (31514401-31514194) | |
| 995-1202, gnl|Hg17|chr1 (8858420-8858213) | |
| 995-1202, gnl|Mm7|chr4 (149236990-149237197) | |
| 1361-1749, gnl|bosTau2|chr16 (31512372-31511984) | |
| 1361-1749, gnl|Hg17|chr1 (8855761-8855367) | |
| 1361-1749, gnl|Mm7|chr4 (149238021-149238381) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 216-316, gnl|bosTau2|chr16 (31520510-31520410) | |
| 216-316, gnl|Hg17|chr1 (8866313-8866213) | |
| 216-316, gnl|Mm7|chr4 (149230585-149230685) | |
| 443-575, gnl|bosTau2|chr19 (14843772-14843904) | |
| 443-575, gnl|canFam2|chr5 (34662025-34661883) | |
| 443-575, gnl|danRer3|chr2 (14566110-14565968) | |
| 443-575, gnl|dasNov1|scaffold_60703 (6660-6802) | |
| 443-575, gnl|echTel1|scaffold_289890 (67734-67866) | |
| 443-575, gnl|fr1|chrUn (74957528-74957670) | |
| 443-575, gnl|galGal2|chr1 (71381299-71381440) | |
| 443-575, gnl|hg17|chr17 (4797751-4797893) | |
| 443-575, gnl|Hg17|chr17 (4797753-4797885) | |
| 443-575, gnl|loxAfr1|scaffold_85475 (3498-3640) | |
| 443-575, gnl|mm7|chr11 (70740600-70740742) | |
| 443-575, gnl|Mm7|chr11 (70740602-70740734) | |
| 443-575, gnl|monDom2|scaffold_66 (3443488-3443346) | |
| 443-575, gnl|oryCun1|scaffold_14019 (8879-9011) | |
| 443-575, gnl|panTro1|chr19 (5126060-5126202) | |
| 443-575, gnl|rheMac2|chr16 (4754675-4754817) | |
| 443-575, gnl|rn3|chr10 (57552468-57552610) | |
| 443-575, gnl|tetNig1|chrUn_random (83981691-83981549) | |
| 443-575, gnl|xenTro1|scaffold_464 (886027-885885) | |
| 576-799, gnl|bosTau2|chr16 (31516643-31516420) | |
| 576-799, gnl|canFam2|chr1 (81475348-81475551) | |
| 576-799, gnl|canFam2|chrX (12244301-12244521) | |
| 576-799, gnl|danRer3|chr22 (35428761-35428570) | |
| 576-799, gnl|danRer3|chr23 (31182818-31182585) | |
| 576-799, gnl|dasNov1|scaffold_27589 (5729-5968) | |
| 576-799, gnl|dasNov1|scaffold_86022 (476-284) | |
| 576-799, gnl|echTel1|scaffold_66085 (5043-4821) | |
| 576-799, gnl|echTel1|scaffold_66085 (5003-4811) | |
| 576-799, gnl|fr1|chrUn (277307631-277307397) | |
| 576-799, gnl|fr1|chrUn (277307583-277307390) | |
| 576-799, gnl|galGal2|chr1 (71382486-71382247) | |
| 576-799, gnl|hg17|chr1 (8860594-8860834) | |
| 576-799, gnl|Hg17|chr1 (8860827-8860604) | |
| 576-799, gnl|hg17|chr2 (202313036-202313233) | |
| 576-799, gnl|loxAfr1|scaffold_33800 (11762-11962) | |
| 576-799, gnl|loxAfr1|scaffold_6718 (73739-73979) | |
| 576-799, gnl|mm7|chr1 (59350613-59350785) | |
| 576-799, gnl|mm7|chr4 (149234891-149234652) | |
| 576-799, gnl|Mm7|chr4 (149234656-149234879) | |
| 576-799, gnl|monDom2|scaffold_148 (817276-817047) | |
| 576-799, gnl|monDom2|scaffold_8 (12949068-12949267) | |
| 576-799, gnl|oryCun1|scaffold_184064 (14445-14205) | |
| 576-799, gnl|oryCun1|scaffold_199389 (110115-110317) | |
| 576-799, gnl|panTro1|chr1 (8867708-8867948) | |
| 576-799, gnl|panTro1|chr13 (92299076-92299273) | |
| 576-799, gnl|rheMac2|chr1 (11905258-11905498) | |
| 576-799, gnl|rheMac2|chr12 (65419357-65419554) | |
| 576-799, gnl|rn3|chr5 (167412660-167412421) | |
| 576-799, gnl|rn3|chr9 (57809555-57809731) | |
| 576-799, gnl|tetNig1|chrUn_random (46515987-46515753) | |
| 576-799, gnl|tetNig1|chrUn_random (46515939-46515747) | |
| 576-799, gnl|xenTro1|scaffold_464 (885499-885731) | |
| 995-1202, gnl|bosTau2|chr16 (31514401-31514194) | |
| 995-1202, gnl|Hg17|chr1 (8858420-8858213) | |
| 995-1202, gnl|Mm7|chr4 (149236990-149237197) | |
| 1361-1749, gnl|bosTau2|chr16 (31512372-31511984) | |
| 1361-1749, gnl|Hg17|chr1 (8855761-8855367) | |
| 1361-1749, gnl|Mm7|chr4 (149238021-149238381) |
| Expressed library(ies): 43 entry(ies) | More info |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
| cov (2.77521) | |
| col (1.56006) | |
| cag (1.51194) | |
| nco (1.4556) | |
| csp (1.28949) | |
| hyp (1.28553) | |
| amn (1.25313) | |
| ill (1.22915) | |
| eep (1.22564) | |
| cly (1.20642) | |
| eru (1.08043) | |
| fty (1.05504) | |
| jca (1.02564) | |
| fhi (1.01747) | |
| nep (0.919625) | |
| cli (0.91687) | |
| jej (0.791374) | |
| eje (0.79067) | |
| ese (0.759013) | |
| ebs (0.709807) | |
| ece (0.687916) | |
| nca (0.684369) | |
| eye (0.682012) | |
| nje (0.66368) | |
| med (0.58126) | |
| lnt (0.569233) | |
| nbm (0.496623) | |
| mas (0.42061) | |
| nmm (0.398406) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| clu (0.358938) | |
| ton (0.351) | |
| fbs (0.350693) | |
| ecc (0.345105) | |
| eli (0.303628) | |
| pty (0.285429) | |
| fce (0.271592) | |
| mcp (0.170648) | |
| cst (0.140036) | |
| ute (0.132784) | |
| cty (0.10408) |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (2.77521) | |
| col (1.56006) | |
| cag (1.51194) | |
| nco (1.4556) | |
| csp (1.28949) | |
| hyp (1.28553) | |
| amn (1.25313) | |
| ill (1.22915) | |
| eep (1.22564) | |
| cly (1.20642) | |
| eru (1.08043) | |
| fty (1.05504) | |
| jca (1.02564) | |
| fhi (1.01747) | |
| nep (0.919625) | |
| cli (0.91687) | |
| jej (0.791374) | |
| eje (0.79067) | |
| ese (0.759013) | |
| ebs (0.709807) | |
| ece (0.687916) | |
| nca (0.684369) | |
| eye (0.682012) | |
| nje (0.66368) | |
| med (0.58126) | |
| lnt (0.569233) | |
| nbm (0.496623) | |
| mas (0.42061) | |
| nmm (0.398406) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| clu (0.358938) | |
| ton (0.351) | |
| fbs (0.350693) | |
| ecc (0.345105) | |
| eli (0.303628) | |
| pty (0.285429) | |
| fce (0.271592) | |
| mcp (0.170648) | |
| cst (0.140036) | |
| ute (0.132784) | |
| cty (0.10408) |