Non-Coding RNA Search

Ss1.1-Tes1-TES01B060011.5

Sequence:


               
               GCTGAGCACCCAGGATCGAGAAGAGGCAGAGGAAAGGGAAGCAGAGAGAAGCAGCCAAGA
GTTGGAGCCAGACCAGGAGGAGCCCGAGTGGAGTTGAAGTTCCTTTTGCAGAGGCGGCAG
CAAGTAAAGCAGTTGAAACGATGCTGGCTGTCTTGGGACTGCTCACCTCCTTCCTTTTTT
TCCTGTATGTGACAGCTCCATCCATCAGGAAGTTCTTTGCTGGTGGGGTTTGTAGGACAA
ACATGCAGCTTCCCGGGAAGGTGGTGGTGATCACGGGTGCCAACACGGGCATTGGCAAGG
AGACAGCCAGAGAGCTCGCTCGCAGAGGAGCCCGAGTATACATTGCCTGCCGAGATGTAC
TGAAGGGGGAGTCTGCTGCCAGTGAAATCCGAGCTGATACAAAGAACTCCCAGGTGCTGG
TGCGGAAACTGGACCTCTCTGATACCAAATCCATCCGAGCCTTTGCTGAGGGCTTTCTGA
CAGAGGAAAAGCAGCTCCATATTCTGATCAACAATGCTGGAGTGATGTTGTGTCCATATT
CCAAGACAGCGGATGGCTTTGAGACCCACCTGGGAGTCAACCACCTGGGCCACTTCCTTC
TCACGCACTTGCTCTTGGAGCAGCTGAAGGCATCTGCTCCCGCACGGGTGGTGAACCTGT
CATCCGTGGTCCACCATGCTGGCAAGATTCGCTTCCACGACCTCCAGGGTGAGAAGCACT
ACAACCGGGGTTTTGCTTATTGCCACAGCAAGCTGGCCAACGTGCTCTTTACTCGGGAAC
TGGCCAAGAGGCTCCAAGGCACGGGGGTCACCACGTACGCAGTGCACCCAGGCATCGTCC
AGTCTGAGCTGGTCCGGCATTCCTTCCTGCTGTGCCTGCTCTGGCGGCTCTTCTCCCGCT
TCCTCAAAACAGCGCGGGAGGGGGCCCAGACCAGCCTGCACTGCGCCCTGGCCGAGGGCC
TGGAGCCCCTGAGCGGCAAGTACTTCAGTGACTGCAAGAGGGCCTGGGTGTCGCCAAGGG
CCCGGAATAACAAAACGGCCGAGCGCTTGTGGAACGTCAGCTGCGAGCTCCTGGGAATCC
AGTGGGAGTAGAGCTGCTGGAAGATGCGCGGCTGTATCAAGCCTGGTCCAGGCCATAACG
CAGACCGGGGAGATGGCCCACCCCGAAGGACTGACCTGGCTGGCTGCTGTCCCAAACACT
TCCCTGCTTTGATTCTCCTGATCCTTGGAAAACCTCCCCACACCTAACCCTCTTACCAGG
CTGATTCTCGGCATAAGAGGTTCATACCTGGAGAGCATCGTCCTTGAAGACTTGCAGAGT
CGGCCACCTTCTCGGGGCAGGAGGACTGGGCAGATGCCAGGCTGGGCACAGGGATGGCAG
AGGAACCTGGGAAATTGAGTCAATTTCCTCACCAATACCAGAAACCCCAGCCAGCACCCT
CGGGAGGTGTCAGTGTTACATATTTTCAGGGACATAGACTCAAACACCTGACCGATCTCT
TTCCTCTTTGAAATATTAGTCTGCAGTCTGGACTATGTGGACTTAAAAAATGCACAACCC
GAGAGTTAAGTTTTATGGGGGGCAAAATTAGGACATAAGCCCAAGAGACAGCATCTCAGG
TAGCCCTGAGAAACCACTCTGGGGTGAGGGGGGAAGCTAGGATATGTGAGTTTTTGCAAC
AAAGGGAAGATAGTAGAAACAGAAGATTTATAGATAACCAGATTTACAGAAGATTTATAC
AAAACCAGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGAGCACCCAGGATCGAGAAGAGGCAGAGGAAAGGGAAGCAGAGAGAAGCAGCCAAGA
GTTGGAGCCAGACCAGGAGGAGCCCGAGTGGAGTTGAAGTTCCTTTTGCAGAGGCGGCAG
CAAGTAAAGCAGTTGAAACGATGCTGGCTGTCTTGGGACTGCTCACCTCCTTCCTTTTTT
TCCTGTATGTGACAGCTCCATCCATCAGGAAGTTCTTTGCTGGTGGGGTTTGTAGGACAA
ACATGCAGCTTCCCGGGAAGGTGGTGGTGATCACGGGTGCCAACACGGGCATTGGCAAGG
AGACAGCCAGAGAGCTCGCTCGCAGAGGAGCCCGAGTATACATTGCCTGCCGAGATGTAC
TGAAGGGGGAGTCTGCTGCCAGTGAAATCCGAGCTGATACAAAGAACTCCCAGGTGCTGG
TGCGGAAACTGGACCTCTCTGATACCAAATCCATCCGAGCCTTTGCTGAGGGCTTTCTGA
CAGAGGAAAAGCAGCTCCATATTCTGATCAACAATGCTGGAGTGATGTTGTGTCCATATT
CCAAGACAGCGGATGGCTTTGAGACCCACCTGGGAGTCAACCACCTGGGCCACTTCCTTC
TCACGCACTTGCTCTTGGAGCAGCTGAAGGCATCTGCTCCCGCACGGGTGGTGAACCTGT
CATCCGTGGTCCACCATGCTGGCAAGATTCGCTTCCACGACCTCCAGGGTGAGAAGCACT
ACAACCGGGGTTTTGCTTATTGCCACAGCAAGCTGGCCAACGTGCTCTTTACTCGGGAAC
TGGCCAAGAGGCTCCAAGGCACGGGGGTCACCACGTACGCAGTGCACCCAGGCATCGTCC
AGTCTGAGCTGGTCCGGCATTCCTTCCTGCTGTGCCTGCTCTGGCGGCTCTTCTCCCGCT
TCCTCAAAACAGCGCGGGAGGGGGCCCAGACCAGCCTGCACTGCGCCCTGGCCGAGGGCC
TGGAGCCCCTGAGCGGCAAGTACTTCAGTGACTGCAAGAGGGCCTGGGTGTCGCCAAGGG
CCCGGAATAACAAAACGGCCGAGCGCTTGTGGAACGTCAGCTGCGAGCTCCTGGGAATCC
AGTGGGAGTAGAGCTGCTGGAAGATGCGCGGCTGTATCAAGCCTGGTCCAGGCCATAACG
CAGACCGGGGAGATGGCCCACCCCGAAGGACTGACCTGGCTGGCTGCTGTCCCAAACACT
TCCCTGCTTTGATTCTCCTGATCCTTGGAAAACCTCCCCACACCTAACCCTCTTACCAGG
CTGATTCTCGGCATAAGAGGTTCATACCTGGAGAGCATCGTCCTTGAAGACTTGCAGAGT
CGGCCACCTTCTCGGGGCAGGAGGACTGGGCAGATGCCAGGCTGGGCACAGGGATGGCAG
AGGAACCTGGGAAATTGAGTCAATTTCCTCACCAATACCAGAAACCCCAGCCAGCACCCT
CGGGAGGTGTCAGTGTTACATATTTTCAGGGACATAGACTCAAACACCTGACCGATCTCT
TTCCTCTTTGAAATATTAGTCTGCAGTCTGGACTATGTGGACTTAAAAAATGCACAACCC
GAGAGTTAAGTTTTATGGGGGGCAAAATTAGGACATAAGCCCAAGAGACAGCATCTCAGG
TAGCCCTGAGAAACCACTCTGGGGTGAGGGGGGAAGCTAGGATATGTGAGTTTTTGCAAC
AAAGGGAAGATAGTAGAAACAGAAGATTTATAGATAACCAGATTTACAGAAGATTTATAC
AAAACCAGTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16549449|dbj|BAB70811.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16549449|dbj|BAB70811.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               70-166, - strand, RNAz p=0.914508
               

               
               1534-1706, + strand, RNAz p=0.999422

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-166, - strand, RNAz p=0.914508
               

               
               1534-1706, + strand, RNAz p=0.999422

Aligned organism(s): 25 entry(ies)

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Aligned organism(s): 25 entry(ies)

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               1-209, gnl|bosTau2|chr10 (53690803-53691018)
               

               
               1-209, gnl|canFam2|chr8 (44720396-44720748)
               

               
               1-209, gnl|echTel1|scaffold_308673 (13141-12814)
               

               
               1-209, gnl|hg17|chr14 (67258790-67259131)
               

               
               1-209, gnl|Hg17|chr14 (67258975-67259181)
               

               
               1-209, gnl|loxAfr1|scaffold_167968 (359-4)
               

               
               1-209, gnl|mm7|chr12 (77167222-77167536)
               

               
               1-209, gnl|Mm7|chr12 (77167399-77167586)
               

               
               1-209, gnl|monDom2|scaffold_8 (83128951-83129230)
               

               
               1-209, gnl|oryCun1|scaffold_214380 (42268-42596)
               

               
               1-209, gnl|panTro1|chr15 (66879480-66879821)
               

               
               1-209, gnl|rheMac2|chr7 (130841369-130841710)
               

               
               1-209, gnl|rn3|chr6 (101986106-101986422)
               


               
               326-483, gnl|bosTau2|chr10 (53693057-53693214)
               

               
               326-483, gnl|Hg17|chr14 (67261567-67261724)
               

               
               326-483, gnl|Mm7|chr12 (77169863-77170020)
               


               
               588-799, gnl|bosTau2|chr10 (53694703-53694914)
               

               
               588-799, gnl|Hg17|chr14 (67263450-67263661)
               

               
               588-799, gnl|Mm7|chr12 (77172020-77172231)
               


               
               983-1533, gnl|bosTau2|chr10 (53698765-53699324)
               

               
               983-1533, gnl|Hg17|chr14 (67270210-67270770)
               

               
               983-1533, gnl|Mm7|chr12 (77180434-77180966)
               


               
               1534-1706, gnl|bosTau2|chr14 (45730984-45731169)
               


               
               1540-1698, gnl|bosTau2|chr14 (28754918-28755088)
               


               
               1564-1694, gnl|bosTau2|chr10 (64156278-64156412)

Aligned organism(s): 25 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-209, gnl|bosTau2|chr10 (53690803-53691018)
               

               
               1-209, gnl|canFam2|chr8 (44720396-44720748)
               

               
               1-209, gnl|echTel1|scaffold_308673 (13141-12814)
               

               
               1-209, gnl|hg17|chr14 (67258790-67259131)
               

               
               1-209, gnl|Hg17|chr14 (67258975-67259181)
               

               
               1-209, gnl|loxAfr1|scaffold_167968 (359-4)
               

               
               1-209, gnl|mm7|chr12 (77167222-77167536)
               

               
               1-209, gnl|Mm7|chr12 (77167399-77167586)
               

               
               1-209, gnl|monDom2|scaffold_8 (83128951-83129230)
               

               
               1-209, gnl|oryCun1|scaffold_214380 (42268-42596)
               

               
               1-209, gnl|panTro1|chr15 (66879480-66879821)
               

               
               1-209, gnl|rheMac2|chr7 (130841369-130841710)
               

               
               1-209, gnl|rn3|chr6 (101986106-101986422)
               


               
               326-483, gnl|bosTau2|chr10 (53693057-53693214)
               

               
               326-483, gnl|Hg17|chr14 (67261567-67261724)
               

               
               326-483, gnl|Mm7|chr12 (77169863-77170020)
               


               
               588-799, gnl|bosTau2|chr10 (53694703-53694914)
               

               
               588-799, gnl|Hg17|chr14 (67263450-67263661)
               

               
               588-799, gnl|Mm7|chr12 (77172020-77172231)
               


               
               983-1533, gnl|bosTau2|chr10 (53698765-53699324)
               

               
               983-1533, gnl|Hg17|chr14 (67270210-67270770)
               

               
               983-1533, gnl|Mm7|chr12 (77180434-77180966)
               


               
               1534-1706, gnl|bosTau2|chr14 (45730984-45731169)
               


               
               1540-1698, gnl|bosTau2|chr14 (28754918-28755088)
               


               
               1564-1694, gnl|bosTau2|chr10 (64156278-64156412)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cov (0.396458)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)

	70-166, - strand, RNAz p=0.914508
	1534-1706, + strand, RNAz p=0.999422

	1-209, gnl\|bosTau2\|chr10 (53690803-53691018)
	1-209, gnl\|canFam2\|chr8 (44720396-44720748)
	1-209, gnl\|echTel1\|scaffold_308673 (13141-12814)
	1-209, gnl\|hg17\|chr14 (67258790-67259131)
	1-209, gnl\|Hg17\|chr14 (67258975-67259181)
	1-209, gnl\|loxAfr1\|scaffold_167968 (359-4)
	1-209, gnl\|mm7\|chr12 (77167222-77167536)
	1-209, gnl\|Mm7\|chr12 (77167399-77167586)
	1-209, gnl\|monDom2\|scaffold_8 (83128951-83129230)
	1-209, gnl\|oryCun1\|scaffold_214380 (42268-42596)
	1-209, gnl\|panTro1\|chr15 (66879480-66879821)
	1-209, gnl\|rheMac2\|chr7 (130841369-130841710)
	1-209, gnl\|rn3\|chr6 (101986106-101986422)

	326-483, gnl\|bosTau2\|chr10 (53693057-53693214)
	326-483, gnl\|Hg17\|chr14 (67261567-67261724)
	326-483, gnl\|Mm7\|chr12 (77169863-77170020)

	588-799, gnl\|bosTau2\|chr10 (53694703-53694914)
	588-799, gnl\|Hg17\|chr14 (67263450-67263661)
	588-799, gnl\|Mm7\|chr12 (77172020-77172231)

	983-1533, gnl\|bosTau2\|chr10 (53698765-53699324)
	983-1533, gnl\|Hg17\|chr14 (67270210-67270770)
	983-1533, gnl\|Mm7\|chr12 (77180434-77180966)

	1534-1706, gnl\|bosTau2\|chr14 (45730984-45731169)

	1540-1698, gnl\|bosTau2\|chr14 (28754918-28755088)

	1564-1694, gnl\|bosTau2\|chr10 (64156278-64156412)