Ss1.1-Tes1-TES01B060065.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCTGCCGTGCCCGGCCGTGGTCTGCTGCCGCTGCTCGCCCACCCAGAAGGCCCACATC GTCAAGCTGCTGCAGCAGCACACCAGCAAGCGCACCTGCGCCATCGGTGACGGTGGAAAC GACGTGAGCATGATCCAGGCGGCCGACTGTGGGATTGGGATTGAAGGGAAGGAGGGGCGG CAGGCTTCCTTGGCAGCCGACTTCTCCATCACGCAGTTCAAGCACATCGGCCGGCTGCTG ATGGTGCACGGGCGCAGCAGCTACAAGCGGTCAGCAGCGCTCGGCCAGTTCGTCATGCAC CGCGGCCTCATCATCTCCACAATGCAGGCCGTGTTTTCGTCTGTCTTCTACTTCGCATCC GTTCCTCTGTACCAGGGATTCCTAATGGTGGGGTACGCGACGGTCTACACCATGTTCCCC GTGTTCTCTCTGGTGCTGGACCGAGACGTGAAGCCGGAGATGGCGATGCTGTACCCCGAG CTCTACAAGGACCTCACCAAGGGGAGATCCTTGTCCTTCAAGACCTTCCTTGTCTGGGTT TTGATCAGCGTTTACCAAGGCGGCATTCTCATGTATGGGGCCCTGGTGCTTTTCGAGTCC GAGTTTGTCCACGTGGTGGCCATCTCCTTCACAGCCCTCATCCTCACGGAGCTGCTGATG GTGGCCCTGACCGTCAGGACGTGGCACTGGCTGATGGTTGTGGCCCAGTTCCTCAGCCTG GGCTGCTATGTAGCCTCACTTGCTTTTCTAAATGAATATTTCGATGTTGCCTTCATCACG ACCGTGACCTTCGTGTGGAAAGTGTCAGCCATCACCGTGGTCAGCTGCCTGCCCCTCTAC GTCCTGAAGTACTTGAGGCGGAAGCTGTCCCCTCCCAGCTACTCCAAGCTCACCTCCTAG GGCTGCACACCTGCCACAGACAGGCCAGGCCCCGGGACCACTGGATGTGGCCGTGCAGCG GCCACTGAGGGACGCGAGGAAGGCCCAGGAGGGAGCCCCAGACTGGGCGCCGGGGACCGG CCGCGCCTTATCCATGCAGGGGCCAGATGTCCTTCCTTTCTTTTTTTATTGTTTTTCAGA ATTTAATTTCTACATCGCAGCAGCTTGAGTTTCTATTGAGAATGAGCCCTCGTCGTCTCA CTGCTGCTGTAAAGCGTTCATCTTACTCTGGCACACTCAGCACTCGGAGAAATGAAAGTT TACTTAATACGCTGCTGTTTCCTAACATTCAAATTCTTTCTTTGATGTCATGATAGAGAA AGTCATTCCTTCTTAACTCAAATAAAGTCTAGATGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCTGCCGTGCCCGGCCGTGGTCTGCTGCCGCTGCTCGCCCACCCAGAAGGCCCACATC GTCAAGCTGCTGCAGCAGCACACCAGCAAGCGCACCTGCGCCATCGGTGACGGTGGAAAC GACGTGAGCATGATCCAGGCGGCCGACTGTGGGATTGGGATTGAAGGGAAGGAGGGGCGG CAGGCTTCCTTGGCAGCCGACTTCTCCATCACGCAGTTCAAGCACATCGGCCGGCTGCTG ATGGTGCACGGGCGCAGCAGCTACAAGCGGTCAGCAGCGCTCGGCCAGTTCGTCATGCAC CGCGGCCTCATCATCTCCACAATGCAGGCCGTGTTTTCGTCTGTCTTCTACTTCGCATCC GTTCCTCTGTACCAGGGATTCCTAATGGTGGGGTACGCGACGGTCTACACCATGTTCCCC GTGTTCTCTCTGGTGCTGGACCGAGACGTGAAGCCGGAGATGGCGATGCTGTACCCCGAG CTCTACAAGGACCTCACCAAGGGGAGATCCTTGTCCTTCAAGACCTTCCTTGTCTGGGTT TTGATCAGCGTTTACCAAGGCGGCATTCTCATGTATGGGGCCCTGGTGCTTTTCGAGTCC GAGTTTGTCCACGTGGTGGCCATCTCCTTCACAGCCCTCATCCTCACGGAGCTGCTGATG GTGGCCCTGACCGTCAGGACGTGGCACTGGCTGATGGTTGTGGCCCAGTTCCTCAGCCTG GGCTGCTATGTAGCCTCACTTGCTTTTCTAAATGAATATTTCGATGTTGCCTTCATCACG ACCGTGACCTTCGTGTGGAAAGTGTCAGCCATCACCGTGGTCAGCTGCCTGCCCCTCTAC GTCCTGAAGTACTTGAGGCGGAAGCTGTCCCCTCCCAGCTACTCCAAGCTCACCTCCTAG GGCTGCACACCTGCCACAGACAGGCCAGGCCCCGGGACCACTGGATGTGGCCGTGCAGCG GCCACTGAGGGACGCGAGGAAGGCCCAGGAGGGAGCCCCAGACTGGGCGCCGGGGACCGG CCGCGCCTTATCCATGCAGGGGCCAGATGTCCTTCCTTTCTTTTTTTATTGTTTTTCAGA ATTTAATTTCTACATCGCAGCAGCTTGAGTTTCTATTGAGAATGAGCCCTCGTCGTCTCA CTGCTGCTGTAAAGCGTTCATCTTACTCTGGCACACTCAGCACTCGGAGAAATGAAAGTT TACTTAATACGCTGCTGTTTCCTAACATTCAAATTCTTTCTTTGATGTCATGATAGAGAA AGTCATTCCTTCTTAACTCAAATAAAGTCTAGATGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 1-108, gnl|bosTau2|chr13 (58485961-58486069) | |
| 1-108, gnl|canFam2|chr24 (40793797-40793886) | |
| 1-108, gnl|danRer3|chr6 (10551384-10551295) | |
| 1-108, gnl|dasNov1|scaffold_16873 (49666-49577) | |
| 1-108, gnl|echTel1|scaffold_289359 (6913-6994) | |
| 1-108, gnl|fr1|chrUn (40069055-40068966) | |
| 1-108, gnl|galGal2|chr20 (12756607-12756519) | |
| 1-108, gnl|hg17|chr20 (49668603-49668692) | |
| 1-108, gnl|Hg17|chr20 (49668714-49668606) | |
| 1-108, gnl|loxAfr1|scaffold_16197 (10464-10553) | |
| 1-108, gnl|mm7|chr2 (168441204-168441293) | |
| 1-108, gnl|Mm7|chr2 (168441315-168441207) | |
| 1-108, gnl|monDom2|scaffold_1 (163837083-163837172) | |
| 1-108, gnl|oryCun1|scaffold_173233 (37760-37670) | |
| 1-108, gnl|panTro1|chr21 (52432705-52432794) | |
| 1-108, gnl|rheMac2|chr10 (12845644-12845555) | |
| 1-108, gnl|rn3|chr18 (77706879-77706968) | |
| 1-108, gnl|tetNig1|chr9 (9764138-9764226) | |
| 1-108, gnl|xenTro1|scaffold_165 (1722731-1722820) | |
| 170-328, gnl|bosTau2|chr13 (58489758-58489916) | |
| 170-328, gnl|canFam2|chr24 (40791502-40791670) | |
| 170-328, gnl|danRer3|chr6 (10556960-10556791) | |
| 170-328, gnl|echTel1|scaffold_289359 (6690-6846) | |
| 170-328, gnl|fr1|chrUn (40070162-40069993) | |
| 170-328, gnl|galGal2|chr20 (12758298-12758131) | |
| 170-328, gnl|hg17|chr20 (49663622-49663790) | |
| 170-328, gnl|Hg17|chr20 (49663780-49663622) | |
| 170-328, gnl|loxAfr1|scaffold_16197 (4452-4620) | |
| 170-328, gnl|mm7|chr2 (168436515-168436677) | |
| 170-328, gnl|Mm7|chr2 (168436673-168436515) | |
| 170-328, gnl|monDom2|scaffold_1 (163834626-163834794) | |
| 170-328, gnl|oryCun1|scaffold_86194 (710-542) | |
| 170-328, gnl|panTro1|chr21 (52427719-52427887) | |
| 170-328, gnl|rheMac2|chr10 (12850632-12850464) | |
| 170-328, gnl|rn3|chr18 (77705674-77705836) | |
| 170-328, gnl|tetNig1|chr9 (9762183-9762352) | |
| 170-328, gnl|xenTro1|scaffold_165 (1722269-1722437) | |
| 392-502, gnl|bosTau2|chr13 (58495553-58495663) | |
| 392-502, gnl|canFam2|chr24 (40786566-40786710) | |
| 392-502, gnl|danRer3|chr6 (10561975-10561846) | |
| 392-502, gnl|dasNov1|scaffold_192293 (2116-2228) | |
| 392-502, gnl|echTel1|scaffold_289359 (6516-6622) | |
| 392-502, gnl|fr1|chrUn (40071685-40071556) | |
| 392-502, gnl|galGal2|chr20 (12760404-12760276) | |
| 392-502, gnl|hg17|chr20 (49658450-49658592) | |
| 392-502, gnl|Hg17|chr20 (49658573-49658463) | |
| 392-502, gnl|loxAfr1|scaffold_222 (199518-199402) | |
| 392-502, gnl|mm7|chr2 (168432531-168432655) | |
| 392-502, gnl|Mm7|chr2 (168432645-168432535) | |
| 392-502, gnl|monDom2|scaffold_1 (163829571-163829707) | |
| 392-502, gnl|oryCun1|scaffold_173233 (44880-44762) | |
| 392-502, gnl|panTro1|chr21 (52422479-52422617) | |
| 392-502, gnl|rheMac2|chr10 (12855876-12855738) | |
| 392-502, gnl|rn3|chr18 (77702860-77702980) | |
| 392-502, gnl|tetNig1|chr9 (9760706-9760822) | |
| 392-502, gnl|xenTro1|scaffold_165 (1716195-1716307) | |
| 558-755, gnl|bosTau2|chr13 (58498963-58499160) | |
| 558-755, gnl|Hg17|chr20 (49654968-49654771) | |
| 558-755, gnl|Mm7|chr2 (168430360-168430163) | |
| 763-1290, gnl|bosTau2|chr24 (948904-949421) | |
| 771-901, gnl|bosTau2|chr13 (58500437-58500567) | |
| 771-901, gnl|Hg17|chr20 (49651286-49651156) | |
| 771-901, gnl|Mm7|chr2 (168427555-168427417) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-108, gnl|bosTau2|chr13 (58485961-58486069) | |
| 1-108, gnl|canFam2|chr24 (40793797-40793886) | |
| 1-108, gnl|danRer3|chr6 (10551384-10551295) | |
| 1-108, gnl|dasNov1|scaffold_16873 (49666-49577) | |
| 1-108, gnl|echTel1|scaffold_289359 (6913-6994) | |
| 1-108, gnl|fr1|chrUn (40069055-40068966) | |
| 1-108, gnl|galGal2|chr20 (12756607-12756519) | |
| 1-108, gnl|hg17|chr20 (49668603-49668692) | |
| 1-108, gnl|Hg17|chr20 (49668714-49668606) | |
| 1-108, gnl|loxAfr1|scaffold_16197 (10464-10553) | |
| 1-108, gnl|mm7|chr2 (168441204-168441293) | |
| 1-108, gnl|Mm7|chr2 (168441315-168441207) | |
| 1-108, gnl|monDom2|scaffold_1 (163837083-163837172) | |
| 1-108, gnl|oryCun1|scaffold_173233 (37760-37670) | |
| 1-108, gnl|panTro1|chr21 (52432705-52432794) | |
| 1-108, gnl|rheMac2|chr10 (12845644-12845555) | |
| 1-108, gnl|rn3|chr18 (77706879-77706968) | |
| 1-108, gnl|tetNig1|chr9 (9764138-9764226) | |
| 1-108, gnl|xenTro1|scaffold_165 (1722731-1722820) | |
| 170-328, gnl|bosTau2|chr13 (58489758-58489916) | |
| 170-328, gnl|canFam2|chr24 (40791502-40791670) | |
| 170-328, gnl|danRer3|chr6 (10556960-10556791) | |
| 170-328, gnl|echTel1|scaffold_289359 (6690-6846) | |
| 170-328, gnl|fr1|chrUn (40070162-40069993) | |
| 170-328, gnl|galGal2|chr20 (12758298-12758131) | |
| 170-328, gnl|hg17|chr20 (49663622-49663790) | |
| 170-328, gnl|Hg17|chr20 (49663780-49663622) | |
| 170-328, gnl|loxAfr1|scaffold_16197 (4452-4620) | |
| 170-328, gnl|mm7|chr2 (168436515-168436677) | |
| 170-328, gnl|Mm7|chr2 (168436673-168436515) | |
| 170-328, gnl|monDom2|scaffold_1 (163834626-163834794) | |
| 170-328, gnl|oryCun1|scaffold_86194 (710-542) | |
| 170-328, gnl|panTro1|chr21 (52427719-52427887) | |
| 170-328, gnl|rheMac2|chr10 (12850632-12850464) | |
| 170-328, gnl|rn3|chr18 (77705674-77705836) | |
| 170-328, gnl|tetNig1|chr9 (9762183-9762352) | |
| 170-328, gnl|xenTro1|scaffold_165 (1722269-1722437) | |
| 392-502, gnl|bosTau2|chr13 (58495553-58495663) | |
| 392-502, gnl|canFam2|chr24 (40786566-40786710) | |
| 392-502, gnl|danRer3|chr6 (10561975-10561846) | |
| 392-502, gnl|dasNov1|scaffold_192293 (2116-2228) | |
| 392-502, gnl|echTel1|scaffold_289359 (6516-6622) | |
| 392-502, gnl|fr1|chrUn (40071685-40071556) | |
| 392-502, gnl|galGal2|chr20 (12760404-12760276) | |
| 392-502, gnl|hg17|chr20 (49658450-49658592) | |
| 392-502, gnl|Hg17|chr20 (49658573-49658463) | |
| 392-502, gnl|loxAfr1|scaffold_222 (199518-199402) | |
| 392-502, gnl|mm7|chr2 (168432531-168432655) | |
| 392-502, gnl|Mm7|chr2 (168432645-168432535) | |
| 392-502, gnl|monDom2|scaffold_1 (163829571-163829707) | |
| 392-502, gnl|oryCun1|scaffold_173233 (44880-44762) | |
| 392-502, gnl|panTro1|chr21 (52422479-52422617) | |
| 392-502, gnl|rheMac2|chr10 (12855876-12855738) | |
| 392-502, gnl|rn3|chr18 (77702860-77702980) | |
| 392-502, gnl|tetNig1|chr9 (9760706-9760822) | |
| 392-502, gnl|xenTro1|scaffold_165 (1716195-1716307) | |
| 558-755, gnl|bosTau2|chr13 (58498963-58499160) | |
| 558-755, gnl|Hg17|chr20 (49654968-49654771) | |
| 558-755, gnl|Mm7|chr2 (168430360-168430163) | |
| 763-1290, gnl|bosTau2|chr24 (948904-949421) | |
| 771-901, gnl|bosTau2|chr13 (58500437-58500567) | |
| 771-901, gnl|Hg17|chr20 (49651286-49651156) | |
| 771-901, gnl|Mm7|chr2 (168427555-168427417) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cje (0.165235) | |
| hyp (0.142837) | |
| ova (0.129132) | |
| tra (0.123092) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jej (0.0989218) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) | |
| hyp (0.142837) | |
| ova (0.129132) | |
| tra (0.123092) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jej (0.0989218) |