Ss1.1-Tes1-TES01B060098.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCATCGACGTCATCATCTTGGCCAGCGATGGCTATTACGCCATGGTGGGGCAGGTGCAC GGCGGGCTCATGGGCGTGATTCAGAGGGCCAAGGTCAAGGCCTGTCCCCACGTCTGGTTT GAACGCTCGGAGGTGAAGGATCGCCACCTGGTGGCCAAAAGGCTGACGGAGCACGTGCAG GATAAAAGCAAGCTGCCCATCCTGATCTTCCCAGAGGGAACCTGCATCAATAATACATCA GTGATGATGTTCAAAAAGGGAAGTTTTGAGATTGGAGCCACCGTTTACCCTGTTGCGATC AAGTACGACCCTCAGTTCGGGGACGCCTTCTGGAACAGCAGCAAGTACGGGATGGTGACG TACCTGCTGAGGATGATGACCAGCTGGGCCATCGTCTGCAGCGTCTGGTACCTGCCCCCC ATGACCAGAGAGGCAGAGGAAGATGCTGTCCAGTTCGCCAACAGAGTGAAGTCTGCCATT GCCAGACAGGGAGGGCTCGTGGACCTGCTGTGGGATGGTGGTCTGAAGCGGGAAAAGGTG AAGGACACATTCAAGGAGGAGCAGCAGAAGCTGTACAGCAAGATGATCGTCGGCAACCAC GAGGACAGGAGCCGGTCCTGAGCCTGCGCCCCGCCGGCGGCAGCTGCCTCGCTGCCGCCG CCTCCCCAGTTGCGGGCTCCTCGGGCTGCTCTGCATTGGGGGCTCCAGCGTCTTCAGAGC TTCCTGGGCTCCCGGGGCTGCCTTCTGAGGGGGACGAGACACCTCCTTGTTTCTTTTCTG CTAAGCCCGTTGGAGGAATGCCATTAAAGCCCTCTGCACCGCGCAGTGCACCTGCATGCT GCGCTCAGGACTCGCTGTGTCTGTCCCCGAGGCCTGCGTGTGTGGGGACCTGGCTGGGGA AGGGCGGCCCTGAGGGGCCCTGCAGACTCCATAAAAAAAAAACAAAACTGTCGTATGCAG GAGCTCTCGGCAGAACGAAGCTCTGTGATCCTGAGCCCCTGCCCGGCAGCCACTCAAGGG GATAAGGGGACAGGGGCAGGCGGGCCATGTGGACTGTGGGAACCCGTGGACTCCCTCGCC CAGAGCACCTGGACCCGCTCTCTGTCGCTCGTGCCTCGGCTTCCTGTCTGTCACCTGGGT CGGGAGGGGAGGGTGGTGAAACCTACCTCACAGGGTTGTTGTGGGGGTTCAAGTGCTACC GCGGGGCAAGGACGGTTCAGCTCAGTGTCACCGTATGGATCCGTGAGTGCGGCGGGAGGA GGGCTGAGCTCGAAGCCACTCACGGGGCTTCAGATTTGTTTTTGTGGGTAAATAAAATTG TCTTTGATGGTGACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGAAAAAAAAAAAA TAAAATTTTCCTTGGGGGGGCCAAATTTTCCCCCCCCCCTTTTTTTTTGAAAAAGGGGGC CCTTTTGGGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCATCGACGTCATCATCTTGGCCAGCGATGGCTATTACGCCATGGTGGGGCAGGTGCAC GGCGGGCTCATGGGCGTGATTCAGAGGGCCAAGGTCAAGGCCTGTCCCCACGTCTGGTTT GAACGCTCGGAGGTGAAGGATCGCCACCTGGTGGCCAAAAGGCTGACGGAGCACGTGCAG GATAAAAGCAAGCTGCCCATCCTGATCTTCCCAGAGGGAACCTGCATCAATAATACATCA GTGATGATGTTCAAAAAGGGAAGTTTTGAGATTGGAGCCACCGTTTACCCTGTTGCGATC AAGTACGACCCTCAGTTCGGGGACGCCTTCTGGAACAGCAGCAAGTACGGGATGGTGACG TACCTGCTGAGGATGATGACCAGCTGGGCCATCGTCTGCAGCGTCTGGTACCTGCCCCCC ATGACCAGAGAGGCAGAGGAAGATGCTGTCCAGTTCGCCAACAGAGTGAAGTCTGCCATT GCCAGACAGGGAGGGCTCGTGGACCTGCTGTGGGATGGTGGTCTGAAGCGGGAAAAGGTG AAGGACACATTCAAGGAGGAGCAGCAGAAGCTGTACAGCAAGATGATCGTCGGCAACCAC GAGGACAGGAGCCGGTCCTGAGCCTGCGCCCCGCCGGCGGCAGCTGCCTCGCTGCCGCCG CCTCCCCAGTTGCGGGCTCCTCGGGCTGCTCTGCATTGGGGGCTCCAGCGTCTTCAGAGC TTCCTGGGCTCCCGGGGCTGCCTTCTGAGGGGGACGAGACACCTCCTTGTTTCTTTTCTG CTAAGCCCGTTGGAGGAATGCCATTAAAGCCCTCTGCACCGCGCAGTGCACCTGCATGCT GCGCTCAGGACTCGCTGTGTCTGTCCCCGAGGCCTGCGTGTGTGGGGACCTGGCTGGGGA AGGGCGGCCCTGAGGGGCCCTGCAGACTCCATAAAAAAAAAACAAAACTGTCGTATGCAG GAGCTCTCGGCAGAACGAAGCTCTGTGATCCTGAGCCCCTGCCCGGCAGCCACTCAAGGG GATAAGGGGACAGGGGCAGGCGGGCCATGTGGACTGTGGGAACCCGTGGACTCCCTCGCC CAGAGCACCTGGACCCGCTCTCTGTCGCTCGTGCCTCGGCTTCCTGTCTGTCACCTGGGT CGGGAGGGGAGGGTGGTGAAACCTACCTCACAGGGTTGTTGTGGGGGTTCAAGTGCTACC GCGGGGCAAGGACGGTTCAGCTCAGTGTCACCGTATGGATCCGTGAGTGCGGCGGGAGGA GGGCTGAGCTCGAAGCCACTCACGGGGCTTCAGATTTGTTTTTGTGGGTAAATAAAATTG TCTTTGATGGTGACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGAAAAAAAAAAAA TAAAATTTTCCTTGGGGGGGCCAAATTTTCCCCCCCCCCTTTTTTTTTGAAAAAGGGGGC CCTTTTGGGGGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 45-162, gnl|bosTau2|chr27 (22090901-22090784) | |
| 45-162, gnl|Hg17|chr8 (41589520-41589637) | |
| 45-162, gnl|Mm7|chr8 (21965534-21965417) | |
| 288-433, gnl|bosTau2|chr27 (22086392-22086247) | |
| 288-433, gnl|canFam2|chr16 (26947173-26947304) | |
| 288-433, gnl|canFam2|chr16 (26947307-26947169) | |
| 288-433, gnl|danRer3|chr23 (54640589-54640460) | |
| 288-433, gnl|danRer3|chr23 (54640457-54640594) | |
| 288-433, gnl|dasNov1|scaffold_149955 (512-643) | |
| 288-433, gnl|dasNov1|scaffold_149955 (646-508) | |
| 288-433, gnl|echTel1|scaffold_278756 (55516-55617) | |
| 288-433, gnl|echTel1|scaffold_325102 (41107-41245) | |
| 288-433, gnl|fr1|chrUn (215414441-215414570) | |
| 288-433, gnl|fr1|chrUn (170865782-170865644) | |
| 288-433, gnl|galGal2|chrUn (789602-789471) | |
| 288-433, gnl|galGal2|chrUn (789468-789601) | |
| 288-433, gnl|hg17|chr14 (24970426-24970557) | |
| 288-433, gnl|hg17|chr8 (41595358-41595496) | |
| 288-433, gnl|Hg17|chr8 (41595357-41595489) | |
| 288-433, gnl|loxAfr1|scaffold_84133 (329-460) | |
| 288-433, gnl|loxAfr1|scaffold_84133 (463-325) | |
| 288-433, gnl|mm7|chr8 (21960823-21960954) | |
| 288-433, gnl|mm7|chr8 (21960957-21960819) | |
| 288-433, gnl|Mm7|chr8 (21960963-21960824) | |
| 288-433, gnl|monDom2|scaffold_1 (80609407-80609538) | |
| 288-433, gnl|monDom2|scaffold_1 (80609541-80609403) | |
| 288-433, gnl|oryCun1|scaffold_211915 (76519-76650) | |
| 288-433, gnl|oryCun1|scaffold_211915 (76653-76520) | |
| 288-433, gnl|panTro1|chr15 (23883592-23883723) | |
| 288-433, gnl|panTro1|chr7 (43013448-43013586) | |
| 288-433, gnl|rheMac2|chr7 (88334525-88334657) | |
| 288-433, gnl|rheMac2|chr8 (42175541-42175679) | |
| 288-433, gnl|rn3|chr16 (73308668-73308537) | |
| 288-433, gnl|rn3|chr16 (73308534-73308672) | |
| 288-433, gnl|tetNig1|chrUn_random (34463287-34463416) | |
| 288-433, gnl|tetNig1|chrUn_random (34463419-34463281) | |
| 288-433, gnl|xenTro1|scaffold_106 (697699-697830) | |
| 288-433, gnl|xenTro1|scaffold_106 (697833-697695) | |
| 512-652, gnl|bosTau2|chr27 (22085906-22085768) | |
| 512-652, gnl|canFam2|chr16 (26945176-26945043) | |
| 512-652, gnl|danRer3|chr23 (54645930-54646049) | |
| 512-652, gnl|dasNov1|scaffold_45771 (12773-12638) | |
| 512-652, gnl|echTel1|scaffold_325102 (48460-48594) | |
| 512-652, gnl|fr1|chrUn (170864462-170864334) | |
| 512-652, gnl|galGal2|chrUn (790308-790428) | |
| 512-652, gnl|hg17|chr8 (41597541-41597678) | |
| 512-652, gnl|Hg17|chr8 (41597568-41597802) | |
| 512-652, gnl|loxAfr1|scaffold_30940 (35534-35624) | |
| 512-652, gnl|mm7|chr8 (21960003-21959870) | |
| 512-652, gnl|Mm7|chr8 (21959978-21959866) | |
| 512-652, gnl|monDom2|scaffold_1 (80606552-80606417) | |
| 512-652, gnl|oryCun1|scaffold_104929 (3683-3823) | |
| 512-652, gnl|panTro1|chr7 (43015633-43015770) | |
| 512-652, gnl|rheMac2|chr8 (42177714-42177851) | |
| 512-652, gnl|rn3|chr16 (73309468-73309601) | |
| 512-652, gnl|tetNig1|chrUn_random (34462302-34462162) | |
| 512-652, gnl|xenTro1|scaffold_106 (695909-695774) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-162, gnl|bosTau2|chr27 (22090901-22090784) | |
| 45-162, gnl|Hg17|chr8 (41589520-41589637) | |
| 45-162, gnl|Mm7|chr8 (21965534-21965417) | |
| 288-433, gnl|bosTau2|chr27 (22086392-22086247) | |
| 288-433, gnl|canFam2|chr16 (26947173-26947304) | |
| 288-433, gnl|canFam2|chr16 (26947307-26947169) | |
| 288-433, gnl|danRer3|chr23 (54640589-54640460) | |
| 288-433, gnl|danRer3|chr23 (54640457-54640594) | |
| 288-433, gnl|dasNov1|scaffold_149955 (512-643) | |
| 288-433, gnl|dasNov1|scaffold_149955 (646-508) | |
| 288-433, gnl|echTel1|scaffold_278756 (55516-55617) | |
| 288-433, gnl|echTel1|scaffold_325102 (41107-41245) | |
| 288-433, gnl|fr1|chrUn (215414441-215414570) | |
| 288-433, gnl|fr1|chrUn (170865782-170865644) | |
| 288-433, gnl|galGal2|chrUn (789602-789471) | |
| 288-433, gnl|galGal2|chrUn (789468-789601) | |
| 288-433, gnl|hg17|chr14 (24970426-24970557) | |
| 288-433, gnl|hg17|chr8 (41595358-41595496) | |
| 288-433, gnl|Hg17|chr8 (41595357-41595489) | |
| 288-433, gnl|loxAfr1|scaffold_84133 (329-460) | |
| 288-433, gnl|loxAfr1|scaffold_84133 (463-325) | |
| 288-433, gnl|mm7|chr8 (21960823-21960954) | |
| 288-433, gnl|mm7|chr8 (21960957-21960819) | |
| 288-433, gnl|Mm7|chr8 (21960963-21960824) | |
| 288-433, gnl|monDom2|scaffold_1 (80609407-80609538) | |
| 288-433, gnl|monDom2|scaffold_1 (80609541-80609403) | |
| 288-433, gnl|oryCun1|scaffold_211915 (76519-76650) | |
| 288-433, gnl|oryCun1|scaffold_211915 (76653-76520) | |
| 288-433, gnl|panTro1|chr15 (23883592-23883723) | |
| 288-433, gnl|panTro1|chr7 (43013448-43013586) | |
| 288-433, gnl|rheMac2|chr7 (88334525-88334657) | |
| 288-433, gnl|rheMac2|chr8 (42175541-42175679) | |
| 288-433, gnl|rn3|chr16 (73308668-73308537) | |
| 288-433, gnl|rn3|chr16 (73308534-73308672) | |
| 288-433, gnl|tetNig1|chrUn_random (34463287-34463416) | |
| 288-433, gnl|tetNig1|chrUn_random (34463419-34463281) | |
| 288-433, gnl|xenTro1|scaffold_106 (697699-697830) | |
| 288-433, gnl|xenTro1|scaffold_106 (697833-697695) | |
| 512-652, gnl|bosTau2|chr27 (22085906-22085768) | |
| 512-652, gnl|canFam2|chr16 (26945176-26945043) | |
| 512-652, gnl|danRer3|chr23 (54645930-54646049) | |
| 512-652, gnl|dasNov1|scaffold_45771 (12773-12638) | |
| 512-652, gnl|echTel1|scaffold_325102 (48460-48594) | |
| 512-652, gnl|fr1|chrUn (170864462-170864334) | |
| 512-652, gnl|galGal2|chrUn (790308-790428) | |
| 512-652, gnl|hg17|chr8 (41597541-41597678) | |
| 512-652, gnl|Hg17|chr8 (41597568-41597802) | |
| 512-652, gnl|loxAfr1|scaffold_30940 (35534-35624) | |
| 512-652, gnl|mm7|chr8 (21960003-21959870) | |
| 512-652, gnl|Mm7|chr8 (21959978-21959866) | |
| 512-652, gnl|monDom2|scaffold_1 (80606552-80606417) | |
| 512-652, gnl|oryCun1|scaffold_104929 (3683-3823) | |
| 512-652, gnl|panTro1|chr7 (43015633-43015770) | |
| 512-652, gnl|rheMac2|chr8 (42177714-42177851) | |
| 512-652, gnl|rn3|chr16 (73309468-73309601) | |
| 512-652, gnl|tetNig1|chrUn_random (34462302-34462162) | |
| 512-652, gnl|xenTro1|scaffold_106 (695909-695774) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| hea (0.204499) | |
| fty (0.17584) | |
| hyp (0.142837) | |
| nbm (0.0993246) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| fty (0.17584) | |
| hyp (0.142837) | |
| nbm (0.0993246) |