Non-Coding RNA Search

Ss1.1-Tes1-TES01B070013.5

Sequence:


               
               CGCGGCAGAAGGAGCAAAGCTCTGGCCCGGCGCGGAGTGGGCGCTGTACGGGGACGCTGG
GCCGGGCACCGGGCTGTGTGGAGAAGTGGGCGCGCTCACCTGACCCCGTCCTCGCCAACC
CGAGCCAGAAGGAGCGAACTCCTGAGGCTCTCGTCCTCCGCAACCTCCTCCCGGCAGCGT
CGGCGTGCACTAGGCCCAGCCAGCTCGCTGCCGCCGACCCTCCCTTCTCCTCCGCCCAGC
CGCTGGGTCTGTGGTGGAAGCAGCCCGAACAAGACCACTCAAGGTGAAGGATATCTACTA
ATACCAGCACTTTGAATGAAAGTTTGTTTCTCTGCCACAAATTGAACACTTTTGTGTGTG
TCTGGGGGGGAGTTGAAACACAAACCTAATTTTGTGGCATAGCAGCTATGCAGCTTGAAA
TCCAAGTAGCACTAAATTTCATTATTTCATATCTGTACAATAAGCTTCCCAGGAGACGTG
TCAACATTTTTGGTGAAGAGCTTGAAAGACTTCTTAAGAAGAAATATGAAGGGCACTGGT
ATCCTGAAAAGCCATATAAAGGATCAGGGTTTAGATGTATACACATAGGGGAGAAAGTGG
ACCCAGTGATTGAACAAGCATCCAAAGAGAGTGGTTTGGACATTGATGATGTTCGTGGCA
ATCTGCCACAGGATCTTAGCGTTTGGATCGACCCGTTTGAGGTTTCCTACCAAATTGGTG
AAAAGGGACCAGTGAAGGTACTTTATGTGGATGATAATAATGAAAATGGATGTGAGTTGG
ATAAGGAGATCAAAAACAGCTTTAACCCAGAGGCCCAGGTTTTTATGCCCATAAGTGACC
CAGCCTCATCAGTGTCCAGCTCTCCATCGCCTCCCTTTGGTCACTCTGCTGCTGTAAGCC
CTACCTTCATGCCCCGGTCCACTCAGCCTTTAACCTTTACCACTGCCACTTTCGCTGCCA
CCAAGTTCGGCTCTACCAAAATGAAGAATAGTGGCCGCAGCAACAAGGTCGCACGTACTT
CTCCTATCAACCTCGGCTTGAATGTGAATGACCTCTTGAAGCAGAAAGCCATCTCTTCCT
CAATGCACTCTCTGTATGGGCTTGGCCTGGGTAGCCCGCAGCAGCCGCAGCAGCAGCAGC
AGCCATCCCAGCCGCCGCCGCCACCGCCACCACCACAGCAGCAGCAGCAGCAGCAGAAAA
CCTCTGCCCTTTCTCCTAATGCCAAGGAATTTATTTTTCCTAATATGCAGGGTCAAGGTA
GTAGTACCAGTGGAATGTTCCCAGGTGACAGCCCCCTTAACCTCAGTCCTCTCCAGTACA
GTAATGCCTTTGATGTGTTTTCGGCCTATGGAGGCCTCAACGAGAAGTCTTTTGTAGATG
GCTTGAATTTTAGCTTGAATAACATGCAGTATTCTAACCAGCAATTCCAGCCTGTTATGG
CTAACTAAAAAAAGAAAAGAAAACAAAGTGTATCGTACAAATTAAAATGCTTGGACCCAA
GGGGGATTTTTTTCTATAACCTCCTTGAGATTTTTTTTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGCAGAAGGAGCAAAGCTCTGGCCCGGCGCGGAGTGGGCGCTGTACGGGGACGCTGG
GCCGGGCACCGGGCTGTGTGGAGAAGTGGGCGCGCTCACCTGACCCCGTCCTCGCCAACC
CGAGCCAGAAGGAGCGAACTCCTGAGGCTCTCGTCCTCCGCAACCTCCTCCCGGCAGCGT
CGGCGTGCACTAGGCCCAGCCAGCTCGCTGCCGCCGACCCTCCCTTCTCCTCCGCCCAGC
CGCTGGGTCTGTGGTGGAAGCAGCCCGAACAAGACCACTCAAGGTGAAGGATATCTACTA
ATACCAGCACTTTGAATGAAAGTTTGTTTCTCTGCCACAAATTGAACACTTTTGTGTGTG
TCTGGGGGGGAGTTGAAACACAAACCTAATTTTGTGGCATAGCAGCTATGCAGCTTGAAA
TCCAAGTAGCACTAAATTTCATTATTTCATATCTGTACAATAAGCTTCCCAGGAGACGTG
TCAACATTTTTGGTGAAGAGCTTGAAAGACTTCTTAAGAAGAAATATGAAGGGCACTGGT
ATCCTGAAAAGCCATATAAAGGATCAGGGTTTAGATGTATACACATAGGGGAGAAAGTGG
ACCCAGTGATTGAACAAGCATCCAAAGAGAGTGGTTTGGACATTGATGATGTTCGTGGCA
ATCTGCCACAGGATCTTAGCGTTTGGATCGACCCGTTTGAGGTTTCCTACCAAATTGGTG
AAAAGGGACCAGTGAAGGTACTTTATGTGGATGATAATAATGAAAATGGATGTGAGTTGG
ATAAGGAGATCAAAAACAGCTTTAACCCAGAGGCCCAGGTTTTTATGCCCATAAGTGACC
CAGCCTCATCAGTGTCCAGCTCTCCATCGCCTCCCTTTGGTCACTCTGCTGCTGTAAGCC
CTACCTTCATGCCCCGGTCCACTCAGCCTTTAACCTTTACCACTGCCACTTTCGCTGCCA
CCAAGTTCGGCTCTACCAAAATGAAGAATAGTGGCCGCAGCAACAAGGTCGCACGTACTT
CTCCTATCAACCTCGGCTTGAATGTGAATGACCTCTTGAAGCAGAAAGCCATCTCTTCCT
CAATGCACTCTCTGTATGGGCTTGGCCTGGGTAGCCCGCAGCAGCCGCAGCAGCAGCAGC
AGCCATCCCAGCCGCCGCCGCCACCGCCACCACCACAGCAGCAGCAGCAGCAGCAGAAAA
CCTCTGCCCTTTCTCCTAATGCCAAGGAATTTATTTTTCCTAATATGCAGGGTCAAGGTA
GTAGTACCAGTGGAATGTTCCCAGGTGACAGCCCCCTTAACCTCAGTCCTCTCCAGTACA
GTAATGCCTTTGATGTGTTTTCGGCCTATGGAGGCCTCAACGAGAAGTCTTTTGTAGATG
GCTTGAATTTTAGCTTGAATAACATGCAGTATTCTAACCAGCAATTCCAGCCTGTTATGG
CTAACTAAAAAAAGAAAAGAAAACAAAGTGTATCGTACAAATTAAAATGCTTGGACCCAA
GGGGGATTTTTTTCTATAACCTCCTTGAGATTTTTTTTTTTTTTTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               TOB1_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               TOB1_HUMAN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               584-743, + strand, RNAz p=0.894396
               

               
               1154-1255, - strand, RNAz p=0.997843
               

               
               1336-1455, - strand, RNAz p=0.954

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               584-743, + strand, RNAz p=0.894396
               

               
               1154-1255, - strand, RNAz p=0.997843
               

               
               1336-1455, - strand, RNAz p=0.954

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_005749, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005749, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-241, gnl|bosTau2|chr19 (28118647-28118390)
               

               
               1-241, gnl|Hg17|chr17 (46298720-46298473)
               

               
               1-241, gnl|Mm7|chr11 (94320472-94320716)
               


               
               545-1548, gnl|bosTau2|chr19 (28116582-28115606)
               

               
               545-1548, gnl|Hg17|chr17 (46296240-46295256)
               

               
               545-1548, gnl|Mm7|chr11 (94322816-94323869)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-241, gnl|bosTau2|chr19 (28118647-28118390)
               

               
               1-241, gnl|Hg17|chr17 (46298720-46298473)
               

               
               1-241, gnl|Mm7|chr11 (94320472-94320716)
               


               
               545-1548, gnl|bosTau2|chr19 (28116582-28115606)
               

               
               545-1548, gnl|Hg17|chr17 (46296240-46295256)
               

               
               545-1548, gnl|Mm7|chr11 (94322816-94323869)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               mcp (0.682594)
               

               
               mas (0.42061)
               

               
               med (0.232504)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.682594)
               

               
               mas (0.42061)
               

               
               med (0.232504)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	584-743, + strand, RNAz p=0.894396
	1154-1255, - strand, RNAz p=0.997843
	1336-1455, - strand, RNAz p=0.954

	1-241, gnl\|bosTau2\|chr19 (28118647-28118390)
	1-241, gnl\|Hg17\|chr17 (46298720-46298473)
	1-241, gnl\|Mm7\|chr11 (94320472-94320716)

	545-1548, gnl\|bosTau2\|chr19 (28116582-28115606)
	545-1548, gnl\|Hg17\|chr17 (46296240-46295256)
	545-1548, gnl\|Mm7\|chr11 (94322816-94323869)

	mcp (0.682594)
	mas (0.42061)
	med (0.232504)
	hea (0.204499)
	fbs (0.175346)
	tbr (0.154178)
	hlv (0.139256)
	nca (0.136874)
	ste (0.135208)
	cov (0.132153)
	eep (0.122564)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)
	ldo (0.0970026)