Non-Coding RNA Search

Ss1.1-Tes1-TES01B080081.5

Sequence:


               
               CAAAGCTGAATCTCCCTCAGCATTGAAACAGACTTGGTGCAATAATTAGTTTGAACCATA
TAAAACTGCCAATTTCCAGTAGTTTTGGGCCTGCAAAATGGCATTTTCATATGTGTGCAG
TGTAATATAAGTAGAATGCAAGGCGGAAGTGGCTTTAGTTCTACCCAAGTCATCTGAAAC
TCGAGCTTGGAGAGATGTCTAAGTACTATGCTCCAGCTTTACTGAGAAAAGGGAAATTCT
CCTGGGGGTGGCCCAATGCTGAAATCTGACAGGCAGAAGCATTCCTGACAGAGGAAGATG
AGCACACTTGACCCCACGTCCCTCTTCATCCCTGCAAACCCAGACTTGTCCCCAGACCCA
CAGCCATAGCAGCCAAGTAAAAATACTTGCTGTTTCCTCAGGCACTGCTCTAATGCTTTA
CAACTATTAACTCATTTGATCCTTACATCATCCCTAGCAGGTAGAAAGTTATTCCATTGC
AGACAGAGCAAAATTGAGACAGAGAGTAACTTGCCCAAGGTTACACAGCTAACGGTGGAG
CTGGGGGTCTGTGCTTATCCCTCTGTTCAGGTGAACAGGGCCAAGTCTCTAACCAGTGCC
TACTTGCCCTGGCCTCTCTCTTGCTAGGCCTGTGATGCTTTGCTTTTGCCCGGTTACTCT
ATGGGACTTGAGTCTATCTTTGGTGATTATCTTCCATGGGCTCTGAGAGAGTGTATTACA
CTCAGAGGCAGATTTGAGAGTTTGGGATTCATGTAGCAAAGACAGAGCTGGACTACAAGG
GATGAACACTGGCTTTTGTCAAAGGCCTGTGCTAGCCAGAAAACTGCAGTTTTGGTCCAT
AATTGTGACCTCAAACTGGTCACTGTACTTCTCGTTTACATCACCTATAAAATGGGGTTA
ATGACCCTACCTACCAGTTCTGTGAGGCTCAAATGAGCCAGGGGATAATGAGCTTGCCTT
AAAAAACTACCCTGCTGTACCATGGGAGGTCCTATAAGCACTCGCAGCGGGGTCCTTGTT
GGGCCTGACACGGTGCTGAGACAACTGCCATTCCTAGCTGCCATCTGGCAGTGGCAGGAG
TTGTTCTCAGCAGAGGCCTGAGCTTCCTTGGGGGTCCATGTCTGTAAGGGGACTGACTAC
TTATTCTCTTTCAGACTTGAGTCTGTAGAAACTTCTTGATTGATACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGCTGAATCTCCCTCAGCATTGAAACAGACTTGGTGCAATAATTAGTTTGAACCATA
TAAAACTGCCAATTTCCAGTAGTTTTGGGCCTGCAAAATGGCATTTTCATATGTGTGCAG
TGTAATATAAGTAGAATGCAAGGCGGAAGTGGCTTTAGTTCTACCCAAGTCATCTGAAAC
TCGAGCTTGGAGAGATGTCTAAGTACTATGCTCCAGCTTTACTGAGAAAAGGGAAATTCT
CCTGGGGGTGGCCCAATGCTGAAATCTGACAGGCAGAAGCATTCCTGACAGAGGAAGATG
AGCACACTTGACCCCACGTCCCTCTTCATCCCTGCAAACCCAGACTTGTCCCCAGACCCA
CAGCCATAGCAGCCAAGTAAAAATACTTGCTGTTTCCTCAGGCACTGCTCTAATGCTTTA
CAACTATTAACTCATTTGATCCTTACATCATCCCTAGCAGGTAGAAAGTTATTCCATTGC
AGACAGAGCAAAATTGAGACAGAGAGTAACTTGCCCAAGGTTACACAGCTAACGGTGGAG
CTGGGGGTCTGTGCTTATCCCTCTGTTCAGGTGAACAGGGCCAAGTCTCTAACCAGTGCC
TACTTGCCCTGGCCTCTCTCTTGCTAGGCCTGTGATGCTTTGCTTTTGCCCGGTTACTCT
ATGGGACTTGAGTCTATCTTTGGTGATTATCTTCCATGGGCTCTGAGAGAGTGTATTACA
CTCAGAGGCAGATTTGAGAGTTTGGGATTCATGTAGCAAAGACAGAGCTGGACTACAAGG
GATGAACACTGGCTTTTGTCAAAGGCCTGTGCTAGCCAGAAAACTGCAGTTTTGGTCCAT
AATTGTGACCTCAAACTGGTCACTGTACTTCTCGTTTACATCACCTATAAAATGGGGTTA
ATGACCCTACCTACCAGTTCTGTGAGGCTCAAATGAGCCAGGGGATAATGAGCTTGCCTT
AAAAAACTACCCTGCTGTACCATGGGAGGTCCTATAAGCACTCGCAGCGGGGTCCTTGTT
GGGCCTGACACGGTGCTGAGACAACTGCCATTCCTAGCTGCCATCTGGCAGTGGCAGGAG
TTGTTCTCAGCAGAGGCCTGAGCTTCCTTGGGGGTCCATGTCTGTAAGGGGACTGACTAC
TTATTCTCTTTCAGACTTGAGTCTGTAGAAACTTCTTGATTGATACAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               957-1105, - strand, RNAz p=0.997834

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               957-1105, - strand, RNAz p=0.997834

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-800, gnl|bosTau2|chr8 (33241763-33240958)
               

               
               1-800, gnl|Hg17|chr9 (97927706-97926823)
               


               
               820-1185, gnl|bosTau2|chr8 (33240975-33240610)
               

               
               820-1185, gnl|Hg17|chr9 (97926873-97926273)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-800, gnl|bosTau2|chr8 (33241763-33240958)
               

               
               1-800, gnl|Hg17|chr9 (97927706-97926823)
               


               
               820-1185, gnl|bosTau2|chr8 (33240975-33240610)
               

               
               820-1185, gnl|Hg17|chr9 (97926873-97926273)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               ese (0.126502)

	1-800, gnl\|bosTau2\|chr8 (33241763-33240958)
	1-800, gnl\|Hg17\|chr9 (97927706-97926823)

	820-1185, gnl\|bosTau2\|chr8 (33240975-33240610)
	820-1185, gnl\|Hg17\|chr9 (97926873-97926273)