Non-Coding RNA Search

Ss1.1-Tes1-TES01B090018.5

Sequence:


               
               TAGGCTTATTAGAGTGCTAGGTATTTTTTATTATGTGAACTATTATTTAAGCTCTCCTCA
TCCCTTTCTCTCCATTTCCTCTCTCCCTGAGATAAGATGAGGCAAGCACAACCCTCAACC
ACTGGGTGGTACTTACTAGAGGGGCCTGGCCCCTTGGCTCACAGTTTCATGGGTGTTAGG
AAATTCCGCCCCTTTCCTGCATTCTCAGACCTGCATTCCTTCCGATTGAGAAGTTAACAG
ATAGCACTTTGAAGGGGGCCCAACAGAGTTGGGGAGGCATTATCACAACTTTGAGGTCCC
CTTGCCTCCTCTAAGGTTGGGCAGGGTGACCTTGAAGTGGGCACAGCCTGGAGCAGGGCT
GGGGACTTGACACCCTCCTGGCCCTTGACACCCAGCCCCTCTGTCCAGTGAAAGTAGGGC
CCTGTAGCAAACCACCCCACCCCCCTCCACCCACAGGGGAGCCAGCCTCACTGATTGGCT
TCCCCTGCACTTTTCTGGGAGCCCAGAGGCCCCTCTTTTCTAGCCGGGCTCTCCATCCCT
CTCTGCTCCTCTACCCTTCTCCATGTCATTTCCCCTTAACACCTTCTCAGCCCTGAGTGG
CAGCTCCAGGGCGCCTCTGCCCCCAACTCAGAGGACTGAACGGAGAAGGGGGCATGCTAG
ACATAGGGTTCCCCAGTTCTACCTCAGGCAGCTCGAGCAGAGACCACCCCCACCTCTTAG
CTCTTGGGGTGGGGGTCCTGGGGAGGGTCTGACAGGCCTCCTTGAATGGGGATCTCCCTG
CATCAGGAGAATGGGGATGAGGAGCAGACATTTCCAGGAGGGAAAGTTTGACACCAATCA
ACGCCTGGAACTACTCCCTCAAAGACTTTTTCCATTCCCTCCACCCCTCCCCCATTTCAT
TGCACTTTGAACAGCAGCTGAACAAAGAGTCAGGTGTTTGAAGATGGTGGGAGTAGAGGC
TGTGGCTAGGGCACACTAAGAGGGCTAACATGGGCCTGAGAGTTGGGAGTTGTTGTCTTT
CCGGATGCCAAACACTGAGCCCCTGGAGGCACTGAACCCCTTGGTGGCTCTGACCCCAAA
CACCTTCCAGCTCCTGTAACATCTTAGCCTGGACTGTTTTCTCCAGGCTCCCATAAGTCC
TGGTTCTTCTGTCTCCACCTAGACTGTAAACCTCTCAAGGGCAGGGAATAGGTCCTGTAT
TGCTCTGTGTCCTTCAAAGCCCCTCCCACAGTGCCGAGTATACTGCAGGTGCTCAATAAA
TATTTCTGGTGATTTTACTTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGCTTATTAGAGTGCTAGGTATTTTTTATTATGTGAACTATTATTTAAGCTCTCCTCA
TCCCTTTCTCTCCATTTCCTCTCTCCCTGAGATAAGATGAGGCAAGCACAACCCTCAACC
ACTGGGTGGTACTTACTAGAGGGGCCTGGCCCCTTGGCTCACAGTTTCATGGGTGTTAGG
AAATTCCGCCCCTTTCCTGCATTCTCAGACCTGCATTCCTTCCGATTGAGAAGTTAACAG
ATAGCACTTTGAAGGGGGCCCAACAGAGTTGGGGAGGCATTATCACAACTTTGAGGTCCC
CTTGCCTCCTCTAAGGTTGGGCAGGGTGACCTTGAAGTGGGCACAGCCTGGAGCAGGGCT
GGGGACTTGACACCCTCCTGGCCCTTGACACCCAGCCCCTCTGTCCAGTGAAAGTAGGGC
CCTGTAGCAAACCACCCCACCCCCCTCCACCCACAGGGGAGCCAGCCTCACTGATTGGCT
TCCCCTGCACTTTTCTGGGAGCCCAGAGGCCCCTCTTTTCTAGCCGGGCTCTCCATCCCT
CTCTGCTCCTCTACCCTTCTCCATGTCATTTCCCCTTAACACCTTCTCAGCCCTGAGTGG
CAGCTCCAGGGCGCCTCTGCCCCCAACTCAGAGGACTGAACGGAGAAGGGGGCATGCTAG
ACATAGGGTTCCCCAGTTCTACCTCAGGCAGCTCGAGCAGAGACCACCCCCACCTCTTAG
CTCTTGGGGTGGGGGTCCTGGGGAGGGTCTGACAGGCCTCCTTGAATGGGGATCTCCCTG
CATCAGGAGAATGGGGATGAGGAGCAGACATTTCCAGGAGGGAAAGTTTGACACCAATCA
ACGCCTGGAACTACTCCCTCAAAGACTTTTTCCATTCCCTCCACCCCTCCCCCATTTCAT
TGCACTTTGAACAGCAGCTGAACAAAGAGTCAGGTGTTTGAAGATGGTGGGAGTAGAGGC
TGTGGCTAGGGCACACTAAGAGGGCTAACATGGGCCTGAGAGTTGGGAGTTGTTGTCTTT
CCGGATGCCAAACACTGAGCCCCTGGAGGCACTGAACCCCTTGGTGGCTCTGACCCCAAA
CACCTTCCAGCTCCTGTAACATCTTAGCCTGGACTGTTTTCTCCAGGCTCCCATAAGTCC
TGGTTCTTCTGTCTCCACCTAGACTGTAAACCTCTCAAGGGCAGGGAATAGGTCCTGTAT
TGCTCTGTGTCCTTCAAAGCCCCTCCCACAGTGCCGAGTATACTGCAGGTGCTCAATAAA
TATTTCTGGTGATTTTACTTGTAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               249-403, + strand, RNAz p=0.967139
               

               
               462-838, - strand, RNAz p=0.991465

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-403, + strand, RNAz p=0.967139
               

               
               462-838, - strand, RNAz p=0.991465

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               619-708, + strand, RNAmicro p=0.950018

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               619-708, + strand, RNAmicro p=0.950018

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_078467, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_078467, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               98-1033, gnl|bosTau2|chr23 (9863597-9864538)
               

               
               98-1033, gnl|Hg17|chr6 (36761898-36762850)
               


               
               1048-1284, gnl|bosTau2|chr23 (9864529-9864765)
               

               
               1048-1284, gnl|Hg17|chr6 (36762841-36763094)
               

               
               1048-1284, gnl|Mm7|chr17 (27293879-27294110)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-1033, gnl|bosTau2|chr23 (9863597-9864538)
               

               
               98-1033, gnl|Hg17|chr6 (36761898-36762850)
               


               
               1048-1284, gnl|bosTau2|chr23 (9864529-9864765)
               

               
               1048-1284, gnl|Hg17|chr6 (36762841-36763094)
               

               
               1048-1284, gnl|Mm7|chr17 (27293879-27294110)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cly (0.361925)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.361925)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

	249-403, + strand, RNAz p=0.967139
	462-838, - strand, RNAz p=0.991465

	98-1033, gnl\|bosTau2\|chr23 (9863597-9864538)
	98-1033, gnl\|Hg17\|chr6 (36761898-36762850)

	1048-1284, gnl\|bosTau2\|chr23 (9864529-9864765)
	1048-1284, gnl\|Hg17\|chr6 (36762841-36763094)
	1048-1284, gnl\|Mm7\|chr17 (27293879-27294110)

	cly (0.361925)
	nep (0.183925)
	duo (0.172801)
	nje (0.16592)
	cje (0.165235)
	csp (0.161186)
	che (0.136314)
	nmm (0.132802)
	ese (0.126502)
	bla (0.124347)
	clu (0.119646)