Non-Coding RNA Search

Ss1.1-Tes1-TES01B090031.5

Sequence:


               
               CGCGACGATCGGGGAGAGACGATCTGAACTGACGAGACTGGCTCACCGGAGCGACCCTGC
CGCGAGGAGTATTAACGGTAACATCCATAGTAGTGTAAAAACTTTCACAATGAAATCTGA
AGCCAAGGATGGAGAGGAGGAGAGTCTACAAACCGCTTTCAAGAAGTTAAGAGTGGATGC
ATCAGGGTCCATAGCATCTCTGTCTGTTGGAGAAGGCACGAGTGTGAGAGCATCAGTCAG
AACAGCAGCAGATGATACAAAACTGAAAACCACATGTGCATCTAAAGACAGTTGGCACGG
GTCTACAAGGAAGTCTTCACGAGGAGCAGTGAGAACCCAGCGTCGTCGACGATCCAAGTC
TCCTGTCCTTCATCCCCCGAAGTTTATACATTGCAGTACAATAGCTGCTGCTTCCAGCTG
CCAGCTCAAGCACAAGAGCCAGACTGACTCCCCTGATGGCAGCAGCGGGCTGGGAATTTC
ACCTCCTAAAGAGTTCAATACAGGAGAATGCTCACCTTCTCTCGATTCTAATCACACAGG
GGCGGTTGTTGAGCCTTTGAGAACCTCGGTTCCAAGGCTCCCATCAGAGAGTAAGGAGGA
AGACTCCTCTGATGTCCCCCAAGTCTCCCAAGCAAGTCTCAAGGCCAATGATCTCTCTGA
CTTTCAGTCTGTTTCCAAGCTAAACCAGGGCAAGCCGTGTACATGCGTAGGCAAGGAGTG
CCAGTGTCAGAGGTGGCATGATATGGAGGTGTATTCCTTTTCAGGCCTGCAGAACGTCCC
TCCCTTGGCCCCAGAGCGAAGATCCACGCTTGAGGACTACTCTCAGTCGCTTCACACAAG
AACTCTGTCTGGCTCTCCCCGCTCCTGTTCTGAGCAAGCCCGGGTCTACGTGGATGACGT
GACCATCGAGGACCTGTCAGGCTACATGGAATATTACTTGTATATTCCCAAGAAAATGTC
CCACATGGCCGAAATGATGTACACCTGAGAGCCGGAAGCTGATTACTGTGCTTCAAACCA
ATGAAGGGTTGTCCGAGAGATTTAGTTAACGGCAGACCTTCCGGCCACTTGGTGTGAGAA
GACATCTCCTTCTGCTCACTGTGCTTGCAATAAAAACTTTTCTTGGCATCTCAGTTAATT
TCATTCTTTAAACTTACTCTTCTCGAGTTCTTACATACCCACCAAGGCAAGCAGATCAGC
GAAAAATCCCTCTCATTTAGAACATCCCCGCCCCCATGTTCCATGGGGATGAAGAAATTG
CTTGACTGGTAGCAGTGGGTCTGTGGTGAAAGCCTTTATAAAACTGCACTTTTTCAGATC
GGTTTAAGATTTGGGTGCCAAGGACAATGAAATGTGGCTTTGAAACTGGACTGCACACTT
GTCATGCTGTAGCTGCCAGCCCAGAATATTAGAAGTTACGTGATCGGTTTAAACCATCTC
TGATTTAACGCAAGATTTATTGTGTCTTAAAAGGTTTCCTATGTTTTTGCTAAGCCAGAG
ATCTAAGGTTTAGATTCAATATGAATAAAGTAGCTGGTCTGTCCCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGACGATCGGGGAGAGACGATCTGAACTGACGAGACTGGCTCACCGGAGCGACCCTGC
CGCGAGGAGTATTAACGGTAACATCCATAGTAGTGTAAAAACTTTCACAATGAAATCTGA
AGCCAAGGATGGAGAGGAGGAGAGTCTACAAACCGCTTTCAAGAAGTTAAGAGTGGATGC
ATCAGGGTCCATAGCATCTCTGTCTGTTGGAGAAGGCACGAGTGTGAGAGCATCAGTCAG
AACAGCAGCAGATGATACAAAACTGAAAACCACATGTGCATCTAAAGACAGTTGGCACGG
GTCTACAAGGAAGTCTTCACGAGGAGCAGTGAGAACCCAGCGTCGTCGACGATCCAAGTC
TCCTGTCCTTCATCCCCCGAAGTTTATACATTGCAGTACAATAGCTGCTGCTTCCAGCTG
CCAGCTCAAGCACAAGAGCCAGACTGACTCCCCTGATGGCAGCAGCGGGCTGGGAATTTC
ACCTCCTAAAGAGTTCAATACAGGAGAATGCTCACCTTCTCTCGATTCTAATCACACAGG
GGCGGTTGTTGAGCCTTTGAGAACCTCGGTTCCAAGGCTCCCATCAGAGAGTAAGGAGGA
AGACTCCTCTGATGTCCCCCAAGTCTCCCAAGCAAGTCTCAAGGCCAATGATCTCTCTGA
CTTTCAGTCTGTTTCCAAGCTAAACCAGGGCAAGCCGTGTACATGCGTAGGCAAGGAGTG
CCAGTGTCAGAGGTGGCATGATATGGAGGTGTATTCCTTTTCAGGCCTGCAGAACGTCCC
TCCCTTGGCCCCAGAGCGAAGATCCACGCTTGAGGACTACTCTCAGTCGCTTCACACAAG
AACTCTGTCTGGCTCTCCCCGCTCCTGTTCTGAGCAAGCCCGGGTCTACGTGGATGACGT
GACCATCGAGGACCTGTCAGGCTACATGGAATATTACTTGTATATTCCCAAGAAAATGTC
CCACATGGCCGAAATGATGTACACCTGAGAGCCGGAAGCTGATTACTGTGCTTCAAACCA
ATGAAGGGTTGTCCGAGAGATTTAGTTAACGGCAGACCTTCCGGCCACTTGGTGTGAGAA
GACATCTCCTTCTGCTCACTGTGCTTGCAATAAAAACTTTTCTTGGCATCTCAGTTAATT
TCATTCTTTAAACTTACTCTTCTCGAGTTCTTACATACCCACCAAGGCAAGCAGATCAGC
GAAAAATCCCTCTCATTTAGAACATCCCCGCCCCCATGTTCCATGGGGATGAAGAAATTG
CTTGACTGGTAGCAGTGGGTCTGTGGTGAAAGCCTTTATAAAACTGCACTTTTTCAGATC
GGTTTAAGATTTGGGTGCCAAGGACAATGAAATGTGGCTTTGAAACTGGACTGCACACTT
GTCATGCTGTAGCTGCCAGCCCAGAATATTAGAAGTTACGTGATCGGTTTAAACCATCTC
TGATTTAACGCAAGATTTATTGTGTCTTAAAAGGTTTCCTATGTTTTTGCTAAGCCAGAG
ATCTAAGGTTTAGATTCAATATGAATAAAGTAGCTGGTCTGTCCCAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57104222|ref|XP_534425.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57104222|ref|XP_534425.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               499-658, - strand, RNAz p=0.945177

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               499-658, - strand, RNAz p=0.945177

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               68-188, gnl|bosTau2|chr13 (54571817-54571937)
               

               
               68-188, gnl|Hg17|chr20 (42269054-42268933)
               

               
               68-188, gnl|Mm7|chr2 (163156547-163156423)
               


               
               300-1207, gnl|bosTau2|chr13 (54576881-54577786)
               

               
               300-1207, gnl|Hg17|chr20 (42259794-42258870)
               

               
               300-1207, gnl|Mm7|chr2 (163147980-163147076)
               


               
               1257-1544, gnl|bosTau2|chr13 (54577811-54578100)
               

               
               1257-1544, gnl|Hg17|chr20 (42258844-42258554)
               

               
               1257-1544, gnl|Mm7|chr2 (163147051-163146782)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-188, gnl|bosTau2|chr13 (54571817-54571937)
               

               
               68-188, gnl|Hg17|chr20 (42269054-42268933)
               

               
               68-188, gnl|Mm7|chr2 (163156547-163156423)
               


               
               300-1207, gnl|bosTau2|chr13 (54576881-54577786)
               

               
               300-1207, gnl|Hg17|chr20 (42259794-42258870)
               

               
               300-1207, gnl|Mm7|chr2 (163147980-163147076)
               


               
               1257-1544, gnl|bosTau2|chr13 (54577811-54578100)
               

               
               1257-1544, gnl|Hg17|chr20 (42258844-42258554)
               

               
               1257-1544, gnl|Mm7|chr2 (163147051-163146782)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

	68-188, gnl\|bosTau2\|chr13 (54571817-54571937)
	68-188, gnl\|Hg17\|chr20 (42269054-42268933)
	68-188, gnl\|Mm7\|chr2 (163156547-163156423)

	300-1207, gnl\|bosTau2\|chr13 (54576881-54577786)
	300-1207, gnl\|Hg17\|chr20 (42259794-42258870)
	300-1207, gnl\|Mm7\|chr2 (163147980-163147076)

	1257-1544, gnl\|bosTau2\|chr13 (54577811-54578100)
	1257-1544, gnl\|Hg17\|chr20 (42258844-42258554)
	1257-1544, gnl\|Mm7\|chr2 (163147051-163146782)

	tes (0.207814)
	nlu (0.191681)
	ill (0.175593)
	duo (0.172801)
	nje (0.16592)
	cag (0.151194)
	fat (0.147427)
	hyp (0.142837)
	pla (0.133672)
	ova (0.129132)
	sug (0.127291)
	eru (0.120048)