Non-Coding RNA Search

Ss1.1-Tes1-TES01B090035.5

Sequence:


               
               GTTCCTCCCGCTTTCTCCACCTCCCGGTCGCACCCAGGCTAATATTCTCAAGTCATCAAG
TCGGCAGCAGGGCATGATGGGCAGGACAGCAGGGCCGCAGAGTCTGCGAAGCGAGTGAAG
AGAGGCGCCTGGAGCACACAAGGGCAGTGGGCTCGCAGGCCGGGACCCCTGACTGGCGCA
GACTACAAAGAGGCCCCCGCAGTAGAACGCGTCGCCTGGCTACCGCCATCGAGTTGTCTT
CTCCAGGACCTCCAGGGTCGGACCTGAGTTCCCACGGTCGGCAACCCGGGCCCAGTACAC
TCGCAGGCCTCCCCTCCAATGATCCAGAAGTCACGCCCGGCGCTGCTGCAGCCTCAGGAT
GTTGGAGACAGAGTGGAAACTCTTATGTTGCAGCCAGTGGTCAAAGCTTTCTTATGTGGC
TCCATCAGTGGGACTTTCTCCGCCCTCCTTTTCCAACCCCTGGATCTCCTCAAAACGCGC
CTGCAGACTGTCCAGCCCTCAGCCCATGGATCCAGACGCGTTGGGATGTTGGCTTTGCTC
TTGAATGTGGTTCGCACAGAGAGTCTGCTGGGCCTTTGGAAAGGGATGTCTCCTTCCATT
GTCAGGTGTGTCCCTGGAGTTGGAATCTACTTCGGCTCGCTCTACTCTTTGAAGCAGTAC
TTCCTGCGAGGCCACCCCCCCACCGCCCTGGAGTCAGTTATCCTGGGGGTGGGCTCCCGC
TCAATTGCAGGGGTCTGCATGTCACCCATCACTGTGATCAAGACACGGTATGATAGTGGG
CGGTACGGCTATGAGAGCATCTACTCAGCCCTGAGGAGCATCTATCACAGCGAGGGGTAC
CGGGGCCTCTTCAGTGGCCTGACAGCAACACTCCTTCGTGACGCCCCCTTTTCTGGAATC
TACCTGATGTTTTACAACCAGACCAAAAACATTGTGCTCCATGACCAGTTGGATGCAGTC
CTTGTACCTGTTGCAAACTTCAGCTGTGGGATATTTGCTGGTATTCTGGCCTCACTGGTC
ACTCAGCCCGCAGATGTTATCAAGACGCACATGCAGCTCTCCCCGGTGAAATTTCGGTGG
ATTGGCCAGGCAGTGACACTCATTTTCAAAGACTATGGGCTGCGTGGCTTCTTCCAAGGC
AGTGTTCCTCGGACCCTCCGCAGGACTCTGGTGGCAGCCATGGCGTGGACAGTCTATGAA
GAGATGATGGCCAAGATGGGCCTAAAGTCCTGACCAAGTGGGGACTGGGCAGAGATGGGA
TCTATTGCCCATATTGTTTTATGCCAAGGGCCACTTCATCTCACTAGCCAGGAACAGGAT
GAAGTCCTACCTGGAAAGCCAGGCAGACATGTCACCCTCACTTACCCAGTTCAAACAGAG
AATTGGTGGGCCTTGACTCAAGCCTTCCAAATCTCCAGAAGAGGAGTCACTGATACGGAC
ACACAGTGGGGAGTTAAGAGAAGGGTTTGCATGCCCTGCAATGCTACTTGAAAAGGTATT
TCCAGAGAGAGCTCTGTCAGGTGGCTCTGCACAGCCACCTACACCACGATTCCTCTTTGG
AACTGCTCTTGGGCAAGGAATTGCAACACCAAGGACGCTGTGGGCTGAGGACTCCAGCAG
GGATCTGGATCTACAGAGAGGAGCCACTGTCACCAGTGGCTGGATCTGCATCTGAGGGGA
TGTTAGGATAAGGAAGAAAAGATGGCACCACTTGGTTCCTAATCAATTTCTCAGAGGCTC
CAGTGCAGGGAGACCATGACTTCCTAGCCTCTACGTATCCAAATAATACTTTTTGATCTT
GGCCCCTGCACTGCTTCAACTCCTAGTTGTTCTGCCACTTTTCTGCAGCTGAAGTTGCGA
TAAATAAAGTGAAGCACTTTATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCTCCCGCTTTCTCCACCTCCCGGTCGCACCCAGGCTAATATTCTCAAGTCATCAAG
TCGGCAGCAGGGCATGATGGGCAGGACAGCAGGGCCGCAGAGTCTGCGAAGCGAGTGAAG
AGAGGCGCCTGGAGCACACAAGGGCAGTGGGCTCGCAGGCCGGGACCCCTGACTGGCGCA
GACTACAAAGAGGCCCCCGCAGTAGAACGCGTCGCCTGGCTACCGCCATCGAGTTGTCTT
CTCCAGGACCTCCAGGGTCGGACCTGAGTTCCCACGGTCGGCAACCCGGGCCCAGTACAC
TCGCAGGCCTCCCCTCCAATGATCCAGAAGTCACGCCCGGCGCTGCTGCAGCCTCAGGAT
GTTGGAGACAGAGTGGAAACTCTTATGTTGCAGCCAGTGGTCAAAGCTTTCTTATGTGGC
TCCATCAGTGGGACTTTCTCCGCCCTCCTTTTCCAACCCCTGGATCTCCTCAAAACGCGC
CTGCAGACTGTCCAGCCCTCAGCCCATGGATCCAGACGCGTTGGGATGTTGGCTTTGCTC
TTGAATGTGGTTCGCACAGAGAGTCTGCTGGGCCTTTGGAAAGGGATGTCTCCTTCCATT
GTCAGGTGTGTCCCTGGAGTTGGAATCTACTTCGGCTCGCTCTACTCTTTGAAGCAGTAC
TTCCTGCGAGGCCACCCCCCCACCGCCCTGGAGTCAGTTATCCTGGGGGTGGGCTCCCGC
TCAATTGCAGGGGTCTGCATGTCACCCATCACTGTGATCAAGACACGGTATGATAGTGGG
CGGTACGGCTATGAGAGCATCTACTCAGCCCTGAGGAGCATCTATCACAGCGAGGGGTAC
CGGGGCCTCTTCAGTGGCCTGACAGCAACACTCCTTCGTGACGCCCCCTTTTCTGGAATC
TACCTGATGTTTTACAACCAGACCAAAAACATTGTGCTCCATGACCAGTTGGATGCAGTC
CTTGTACCTGTTGCAAACTTCAGCTGTGGGATATTTGCTGGTATTCTGGCCTCACTGGTC
ACTCAGCCCGCAGATGTTATCAAGACGCACATGCAGCTCTCCCCGGTGAAATTTCGGTGG
ATTGGCCAGGCAGTGACACTCATTTTCAAAGACTATGGGCTGCGTGGCTTCTTCCAAGGC
AGTGTTCCTCGGACCCTCCGCAGGACTCTGGTGGCAGCCATGGCGTGGACAGTCTATGAA
GAGATGATGGCCAAGATGGGCCTAAAGTCCTGACCAAGTGGGGACTGGGCAGAGATGGGA
TCTATTGCCCATATTGTTTTATGCCAAGGGCCACTTCATCTCACTAGCCAGGAACAGGAT
GAAGTCCTACCTGGAAAGCCAGGCAGACATGTCACCCTCACTTACCCAGTTCAAACAGAG
AATTGGTGGGCCTTGACTCAAGCCTTCCAAATCTCCAGAAGAGGAGTCACTGATACGGAC
ACACAGTGGGGAGTTAAGAGAAGGGTTTGCATGCCCTGCAATGCTACTTGAAAAGGTATT
TCCAGAGAGAGCTCTGTCAGGTGGCTCTGCACAGCCACCTACACCACGATTCCTCTTTGG
AACTGCTCTTGGGCAAGGAATTGCAACACCAAGGACGCTGTGGGCTGAGGACTCCAGCAG
GGATCTGGATCTACAGAGAGGAGCCACTGTCACCAGTGGCTGGATCTGCATCTGAGGGGA
TGTTAGGATAAGGAAGAAAAGATGGCACCACTTGGTTCCTAATCAATTTCTCAGAGGCTC
CAGTGCAGGGAGACCATGACTTCCTAGCCTCTACGTATCCAAATAATACTTTTTGATCTT
GGCCCCTGCACTGCTTCAACTCCTAGTTGTTCTGCCACTTTTCTGCAGCTGAAGTTGCGA
TAAATAAAGTGAAGCACTTTATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|59857991|gb|AAX08830.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|59857991|gb|AAX08830.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1458-1571, - strand, RNAz p=0.769443
               

               
               1712-1821, - strand, RNAz p=0.933249

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1458-1571, - strand, RNAz p=0.769443
               

               
               1712-1821, - strand, RNAz p=0.933249

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-387, gnl|bosTau2|chr22 (10031625-10031993)
               

               
               1-387, gnl|Hg17|chr3 (39399868-39400288)
               


               
               595-798, gnl|bosTau2|chr22 (10040786-10040987)
               

               
               595-798, gnl|Hg17|chr3 (39407936-39408137)
               

               
               595-798, gnl|Mm7|chr9 (119816152-119816353)
               


               
               889-1111, gnl|bosTau2|chr22 (10043093-10043317)
               

               
               889-1111, gnl|Hg17|chr3 (39410852-39411072)
               

               
               889-1111, gnl|Mm7|chr9 (119817955-119818156)
               


               
               1381-1884, gnl|bosTau2|chr22 (10045551-10046078)
               

               
               1381-1884, gnl|Hg17|chr3 (39413171-39413700)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-387, gnl|bosTau2|chr22 (10031625-10031993)
               

               
               1-387, gnl|Hg17|chr3 (39399868-39400288)
               


               
               595-798, gnl|bosTau2|chr22 (10040786-10040987)
               

               
               595-798, gnl|Hg17|chr3 (39407936-39408137)
               

               
               595-798, gnl|Mm7|chr9 (119816152-119816353)
               


               
               889-1111, gnl|bosTau2|chr22 (10043093-10043317)
               

               
               889-1111, gnl|Hg17|chr3 (39410852-39411072)
               

               
               889-1111, gnl|Mm7|chr9 (119817955-119818156)
               


               
               1381-1884, gnl|bosTau2|chr22 (10045551-10046078)
               

               
               1381-1884, gnl|Hg17|chr3 (39413171-39413700)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               eep (0.245128)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1458-1571, - strand, RNAz p=0.769443
	1712-1821, - strand, RNAz p=0.933249

	1-387, gnl\|bosTau2\|chr22 (10031625-10031993)
	1-387, gnl\|Hg17\|chr3 (39399868-39400288)

	595-798, gnl\|bosTau2\|chr22 (10040786-10040987)
	595-798, gnl\|Hg17\|chr3 (39407936-39408137)
	595-798, gnl\|Mm7\|chr9 (119816152-119816353)

	889-1111, gnl\|bosTau2\|chr22 (10043093-10043317)
	889-1111, gnl\|Hg17\|chr3 (39410852-39411072)
	889-1111, gnl\|Mm7\|chr9 (119817955-119818156)

	1381-1884, gnl\|bosTau2\|chr22 (10045551-10046078)
	1381-1884, gnl\|Hg17\|chr3 (39413171-39413700)

	eep (0.245128)
	cut (0.169924)
	cki (0.165235)
	spl (0.143184)
	cst (0.140036)
	che (0.136314)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	nbm (0.0993246)
	eje (0.0988338)