Non-Coding RNA Search

Ss1.1-Tes1-TES01B090072.5

Sequence:


               
               GAAGCCGGGAGCAGCGCAGGAGGGAAGAGCGCCAGCTGCGAGCCCAGGCGAGCCGATCTG
ATTTGTATCCACTGCGATCAGCACTCACTCCCTTAGGACTTTCCAGACCAGGGACTCCAG
AGTAACCAGACTCCTCACCCGAAGGAGACTGTAATTTCCGATTCCTGGGTGGAGGAAAAC
AAAAACACTCTGGTCTTGCTTCCAATGATGCAAGTGTGATTGCTGGCGTCTTCATGAGCT
CCCGAGGTCACAGCACGCTACCGCGGACTCTCATGGCCCCTCGGATGATTTCTGAGGGAG
ACATAGGAGGCATTGCTCAAATCACCTCCTCCCTCTTCCTGGGCAGAGGCAGTGTAGCCT
CCAACCGGCACCTCCTCCAGGCCCGCGGCATCACCTGCATTGTCAATGCTACCATTGAGA
TTCCCAATTTCAACTGGCCCCAATTTGAATATGTTAAAGTGCCTCTGGCAGACATGCCTC
ATGCCCCCATCGGACTGTACTTCGACACCGTGGCCGACAAAATCCACAGTGTGAGCAGGA
AACACGGGGCCACCTTGGTGCACTGTGCCGCAGGGGTGAGCCGCTCGGCCACCCTCTGCA
TTGCCTACCTGATGAAGTTCCACAGCGTGTGCCTGCTGGAGGCGTACAACTGGGTGAAAG
CCCGGAGGCCTGTCATCAGGCCCAACGTGGGCTTCTGGAGGCAGCTGATAGACTACGAGC
GCCAGCTCTATGGGAAGTCGACAGTTAAAATGGTACAGACGCCTTACGGCATAGTTCCAG
ACGTTTATGAGAAGGAATCCCGACACCTGATGCCTTACTGGGGGATTTAAGCCACCAAAG
CCACGCCTGCATCAGCAGCCCCTCGGGCAGTACCAGCATCTGCTACACACCGTCCACTCC
CCTCTTCACCTTTCTTTCCAAATGGTTGACTCTCGGCTCGCCCTGAAGTGTTTTTTACAC
TGGGTACTCACGTTTATTCTAAGAAAGGGGAGGAGGGGAGGAACGTAGGGGAACGCGTAC
ATTGCTAGTAACATTTTTAAAACTAACTAACATTTTGGAATAGTGTTTATGAAAATCTTT
AACTGGCTTTTAATCATTTTTAACAATTTGAACAGTTTAATAAACTGTTTGGTTCTGCTC
TATTCTCAATCCCATGCCTTCTGGCATCATGGGAGGAGCTCAGTGCAAAAATCACTTTGG
GTCCTGATTAACCCTTTCGATACAAGCTTTGCCCCAGGCTGCCGACCAAACAAATGCTTA
GGGAGGATTGACACCGGCGTCAGTCTCTACCAGATCAGCCCTCCTCTTTCCTTCTGAATT
TCTATTTAGTGACTCTGTAAGTTAAAAACCAAGCCTTTATTAGTTAGCTGTTAAGTAATT
ATAATGAAATCTGCTGCAAACACCCTCTTGGAATCAATGTGTCCCAGGACTATCTATTAG
CATTATTTTTAATAAATATACCTGCTTATCATATTGAAAAAAAAAAAAATAAGAATTTCA
AGGTAGAGTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCCGGGAGCAGCGCAGGAGGGAAGAGCGCCAGCTGCGAGCCCAGGCGAGCCGATCTG
ATTTGTATCCACTGCGATCAGCACTCACTCCCTTAGGACTTTCCAGACCAGGGACTCCAG
AGTAACCAGACTCCTCACCCGAAGGAGACTGTAATTTCCGATTCCTGGGTGGAGGAAAAC
AAAAACACTCTGGTCTTGCTTCCAATGATGCAAGTGTGATTGCTGGCGTCTTCATGAGCT
CCCGAGGTCACAGCACGCTACCGCGGACTCTCATGGCCCCTCGGATGATTTCTGAGGGAG
ACATAGGAGGCATTGCTCAAATCACCTCCTCCCTCTTCCTGGGCAGAGGCAGTGTAGCCT
CCAACCGGCACCTCCTCCAGGCCCGCGGCATCACCTGCATTGTCAATGCTACCATTGAGA
TTCCCAATTTCAACTGGCCCCAATTTGAATATGTTAAAGTGCCTCTGGCAGACATGCCTC
ATGCCCCCATCGGACTGTACTTCGACACCGTGGCCGACAAAATCCACAGTGTGAGCAGGA
AACACGGGGCCACCTTGGTGCACTGTGCCGCAGGGGTGAGCCGCTCGGCCACCCTCTGCA
TTGCCTACCTGATGAAGTTCCACAGCGTGTGCCTGCTGGAGGCGTACAACTGGGTGAAAG
CCCGGAGGCCTGTCATCAGGCCCAACGTGGGCTTCTGGAGGCAGCTGATAGACTACGAGC
GCCAGCTCTATGGGAAGTCGACAGTTAAAATGGTACAGACGCCTTACGGCATAGTTCCAG
ACGTTTATGAGAAGGAATCCCGACACCTGATGCCTTACTGGGGGATTTAAGCCACCAAAG
CCACGCCTGCATCAGCAGCCCCTCGGGCAGTACCAGCATCTGCTACACACCGTCCACTCC
CCTCTTCACCTTTCTTTCCAAATGGTTGACTCTCGGCTCGCCCTGAAGTGTTTTTTACAC
TGGGTACTCACGTTTATTCTAAGAAAGGGGAGGAGGGGAGGAACGTAGGGGAACGCGTAC
ATTGCTAGTAACATTTTTAAAACTAACTAACATTTTGGAATAGTGTTTATGAAAATCTTT
AACTGGCTTTTAATCATTTTTAACAATTTGAACAGTTTAATAAACTGTTTGGTTCTGCTC
TATTCTCAATCCCATGCCTTCTGGCATCATGGGAGGAGCTCAGTGCAAAAATCACTTTGG
GTCCTGATTAACCCTTTCGATACAAGCTTTGCCCCAGGCTGCCGACCAAACAAATGCTTA
GGGAGGATTGACACCGGCGTCAGTCTCTACCAGATCAGCCCTCCTCTTTCCTTCTGAATT
TCTATTTAGTGACTCTGTAAGTTAAAAACCAAGCCTTTATTAGTTAGCTGTTAAGTAATT
ATAATGAAATCTGCTGCAAACACCCTCTTGGAATCAATGTGTCCCAGGACTATCTATTAG
CATTATTTTTAATAAATATACCTGCTTATCATATTGAAAAAAAAAAAAATAAGAATTTCA
AGGTAGAGTTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55645275|ref|XP_523617.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55645275|ref|XP_523617.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               216-415, - strand, RNAz p=0.786219
               

               
               576-735, - strand, RNAz p=0.983153
               

               
               895-1003, - strand, RNAz p=0.999992
               

               
               1106-1216, - strand, RNAz p=0.861353

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-415, - strand, RNAz p=0.786219
               

               
               576-735, - strand, RNAz p=0.983153
               

               
               895-1003, - strand, RNAz p=0.999992
               

               
               1106-1216, - strand, RNAz p=0.861353

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               141-1479, gnl|bosTau2|chr19 (7063048-7061690)
               

               
               141-1479, gnl|Hg17|chr17 (32946396-32947719)
               

               
               141-1479, gnl|Mm7|chr11 (84119218-84117947)
               


               
               445-827, gnl|bosTau2|chr17 (42818872-42818490)
               

               
               445-827, gnl|Hg17|chr22 (29384354-29383972)
               

               
               445-827, gnl|Mm7|chr11 (3849205-3849587)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-1479, gnl|bosTau2|chr19 (7063048-7061690)
               

               
               141-1479, gnl|Hg17|chr17 (32946396-32947719)
               

               
               141-1479, gnl|Mm7|chr11 (84119218-84117947)
               


               
               445-827, gnl|bosTau2|chr17 (42818872-42818490)
               

               
               445-827, gnl|Hg17|chr22 (29384354-29383972)
               

               
               445-827, gnl|Mm7|chr11 (3849205-3849587)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ton (0.877501)
               

               
               cty (0.31224)
               

               
               cbe (0.239234)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               clu (0.119646)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.877501)
               

               
               cty (0.31224)
               

               
               cbe (0.239234)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               clu (0.119646)

	216-415, - strand, RNAz p=0.786219
	576-735, - strand, RNAz p=0.983153
	895-1003, - strand, RNAz p=0.999992
	1106-1216, - strand, RNAz p=0.861353

	141-1479, gnl\|bosTau2\|chr19 (7063048-7061690)
	141-1479, gnl\|Hg17\|chr17 (32946396-32947719)
	141-1479, gnl\|Mm7\|chr11 (84119218-84117947)

	445-827, gnl\|bosTau2\|chr17 (42818872-42818490)
	445-827, gnl\|Hg17\|chr22 (29384354-29383972)
	445-827, gnl\|Mm7\|chr11 (3849205-3849587)

	ton (0.877501)
	cty (0.31224)
	cbe (0.239234)
	fty (0.17584)
	rec (0.17307)
	duo (0.172801)
	cli (0.152812)
	cag (0.151194)
	nca (0.136874)
	pla (0.133672)
	cbr (0.127975)
	thg (0.126791)
	clu (0.119646)