Ss1.1-Tes1-TES01B100001.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCAAAGGCCTCATCCTCATCAACCCCCACAACCCCCTGGGTGACGTCTACTCCCTGGGG GAGCTGCAGGAGTACCTGGACTTTGCCAAGAGGCATGAGCTGCACGTGATAGTGGATGAG ATCTACCTGCTTTCGGTGTTTGAGAAGTCGGTTGAGTTCCACAGTGTCCTGAGCCTGGAA AGGCTCCCTGACTCCCAGAGGACTCATGTGATGTGGGCGGCCAGCAAGGACTTCGGGATG TCTGGGATCCGCTTCGGCACGCTGTACACAGAAAACCGGGACGTCGCCACTGCGGTGGCC TCCCTCTGCCGCTATCACAGCCTCAGTGGCTTGGTCCAGTACCAGATGGCACAGCTGTTC CGGGACCGTGACTGGATCAACCAAGTGTACCTGCCGGAAAACCACGCCCGGCTCAAGGCT GCCCACACCTATGTCTCAGAAGAGCTCCGGGCCCTGGGGATCCCCTTTCTGAGCCGTGGG GCCGGCTTCTTCATCTGGGCCAACTTGGGGAAGTATCTGCCCGAGGCCACCTTTGAGCAG GAGATGCTGCTCTGGCGCCGCTTTTTGGATAACAAGGTGCTGCTGTCCTTTGGCAAAGCC TTCGAGTGCAAAGAGCCCGGCTGGTTCCGCTTGGTCTTCTCCGACAGGATGCACCGGCTT CGCCTGGGGATGCAGAGGGTCCGGCAGGTGCTTGAGAGCGAATCCCAGGTGGCAGCAGAC GCCCCTTCCTGCCAGACCCAAGAGCCGAGGGGGCCTCGCAGCCACTGTGAAGACTGATGG TGGAGGAGCCCTTTGCCAGGCAGGTACCCTTCTTGGCCCTGCCCTTGAAGACAAAGGACC GCTCCTTGTTCTCCTGGTGGCAGTGAGACACGCCTTAGGTTATGGTTCCATTTGGTCCAC CCCCCTCCCCTTCTATTAAACAAAACTGGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCAAAGGCCTCATCCTCATCAACCCCCACAACCCCCTGGGTGACGTCTACTCCCTGGGG GAGCTGCAGGAGTACCTGGACTTTGCCAAGAGGCATGAGCTGCACGTGATAGTGGATGAG ATCTACCTGCTTTCGGTGTTTGAGAAGTCGGTTGAGTTCCACAGTGTCCTGAGCCTGGAA AGGCTCCCTGACTCCCAGAGGACTCATGTGATGTGGGCGGCCAGCAAGGACTTCGGGATG TCTGGGATCCGCTTCGGCACGCTGTACACAGAAAACCGGGACGTCGCCACTGCGGTGGCC TCCCTCTGCCGCTATCACAGCCTCAGTGGCTTGGTCCAGTACCAGATGGCACAGCTGTTC CGGGACCGTGACTGGATCAACCAAGTGTACCTGCCGGAAAACCACGCCCGGCTCAAGGCT GCCCACACCTATGTCTCAGAAGAGCTCCGGGCCCTGGGGATCCCCTTTCTGAGCCGTGGG GCCGGCTTCTTCATCTGGGCCAACTTGGGGAAGTATCTGCCCGAGGCCACCTTTGAGCAG GAGATGCTGCTCTGGCGCCGCTTTTTGGATAACAAGGTGCTGCTGTCCTTTGGCAAAGCC TTCGAGTGCAAAGAGCCCGGCTGGTTCCGCTTGGTCTTCTCCGACAGGATGCACCGGCTT CGCCTGGGGATGCAGAGGGTCCGGCAGGTGCTTGAGAGCGAATCCCAGGTGGCAGCAGAC GCCCCTTCCTGCCAGACCCAAGAGCCGAGGGGGCCTCGCAGCCACTGTGAAGACTGATGG TGGAGGAGCCCTTTGCCAGGCAGGTACCCTTCTTGGCCCTGCCCTTGAAGACAAAGGACC GCTCCTTGTTCTCCTGGTGGCAGTGAGACACGCCTTAGGTTATGGTTCCATTTGGTCCAC CCCCCTCCCCTTCTATTAAACAAAACTGGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-103, - strand, RNAz p=0.615291 | |
| 1-103, - strand, RNAz p=0.968362 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-103, - strand, RNAz p=0.615291 | |
| 1-103, - strand, RNAz p=0.968362 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-103, gnl|bosTau2|chr15 (45998541-45998441) | |
| 1-103, gnl|canFam2|chr18 (48188169-48188096) | |
| 1-103, gnl|dasNov1|scaffold_11222 (47027-46938) | |
| 1-103, gnl|echTel1|scaffold_313716 (529-652) | |
| 1-103, gnl|galGal2|chr5 (18956528-18956630) | |
| 1-103, gnl|hg17|chr11 (44056817-44056937) | |
| 1-103, gnl|Hg17|chr11 (44056819-44056919) | |
| 1-103, gnl|loxAfr1|scaffold_257 (41834-41954) | |
| 1-103, gnl|mm7|chr2 (93690834-93690720) | |
| 1-103, gnl|Mm7|chr2 (93690830-93690730) | |
| 1-103, gnl|monDom2|scaffold_33 (9440675-9440785) | |
| 1-103, gnl|oryCun1|scaffold_63477 (1014-1113) | |
| 1-103, gnl|panTro1|chr9 (44553787-44553907) | |
| 1-103, gnl|rheMac2|chr14 (28033328-28033208) | |
| 1-103, gnl|rn3|chr3 (78154130-78154016) | |
| 1-103, gnl|tetNig1|chr13 (5130641-5130758) | |
| 1-103, gnl|xenTro1|scaffold_266 (334519-334615) | |
| 227-370, gnl|bosTau2|chr15 (45995666-45995523) | |
| 227-370, gnl|Hg17|chr11 (44059303-44059446) | |
| 227-370, gnl|Mm7|chr2 (93688870-93688727) | |
| 512-668, gnl|bosTau2|chr15 (45993536-45993380) | |
| 512-668, gnl|Hg17|chr11 (44061548-44061704) | |
| 512-668, gnl|Mm7|chr2 (93686801-93686645) | |
| 751-935, gnl|bosTau2|chr15 (45993116-45992949) | |
| 751-935, gnl|Hg17|chr11 (44061943-44062144) | |
| 751-935, gnl|Mm7|chr2 (93686414-93686243) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-103, gnl|bosTau2|chr15 (45998541-45998441) | |
| 1-103, gnl|canFam2|chr18 (48188169-48188096) | |
| 1-103, gnl|dasNov1|scaffold_11222 (47027-46938) | |
| 1-103, gnl|echTel1|scaffold_313716 (529-652) | |
| 1-103, gnl|galGal2|chr5 (18956528-18956630) | |
| 1-103, gnl|hg17|chr11 (44056817-44056937) | |
| 1-103, gnl|Hg17|chr11 (44056819-44056919) | |
| 1-103, gnl|loxAfr1|scaffold_257 (41834-41954) | |
| 1-103, gnl|mm7|chr2 (93690834-93690720) | |
| 1-103, gnl|Mm7|chr2 (93690830-93690730) | |
| 1-103, gnl|monDom2|scaffold_33 (9440675-9440785) | |
| 1-103, gnl|oryCun1|scaffold_63477 (1014-1113) | |
| 1-103, gnl|panTro1|chr9 (44553787-44553907) | |
| 1-103, gnl|rheMac2|chr14 (28033328-28033208) | |
| 1-103, gnl|rn3|chr3 (78154130-78154016) | |
| 1-103, gnl|tetNig1|chr13 (5130641-5130758) | |
| 1-103, gnl|xenTro1|scaffold_266 (334519-334615) | |
| 227-370, gnl|bosTau2|chr15 (45995666-45995523) | |
| 227-370, gnl|Hg17|chr11 (44059303-44059446) | |
| 227-370, gnl|Mm7|chr2 (93688870-93688727) | |
| 512-668, gnl|bosTau2|chr15 (45993536-45993380) | |
| 512-668, gnl|Hg17|chr11 (44061548-44061704) | |
| 512-668, gnl|Mm7|chr2 (93686801-93686645) | |
| 751-935, gnl|bosTau2|chr15 (45993116-45992949) | |
| 751-935, gnl|Hg17|chr11 (44061943-44062144) | |
| 751-935, gnl|Mm7|chr2 (93686414-93686243) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| col (0.195008) | |
| duo (0.172801) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| che (0.136314) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| duo (0.172801) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| che (0.136314) |