Ss1.1-Tes1-TES01B100008.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGGAGCTGCCGCTGCCCCGACCCGGTCCGCGCCCTCACCCCAGAGAAGCCGCAGCCAC AGTCCCGGCCGTCCCCCGGTTGGCAGAGTCCGCTCCGGCCCCAGAAAGCAAACCGCCACC ATGGTGAAGATCGTGACCGTTAAGACCAAGGCGTATCAAGACCAGAAGCCGGGCACGAGC GGGCTGCGGAAGCGGGTGAAGGTGTTTCAGAGCAGCGCCAACTACGCGGAGAATTTCATC CAGAGTATCATCTCCACCGTGGAGCCGGCGCATCGGCAGGAGGCCACCCTGGTGGTGGGC GGGGACGGCAGGTTTTACATGAAGGAGGCCATCCAGCTCATCGTCCGCATCGCCGCCGCC AACGGGATTGGTCGCTTGGTTATTGGACAGAATGGAATCCTCTCCACCCCTGCTGTATCC TGCATCATTAGAAAGATCAAAGCCATTGGTGGGATCATCCTGACAGCCAGCCACAACCCA GGAGGACCCAATGGAGATTTTGGAATCAAATTCAATATTTCCAACGGAGGTCCTGCCCCG GAAGCAATAACGGATAAGATTTTCCAAATCAGCAAGACAATTGAAGAATACGCGATTTGC CCTGACCTGAAAGTAGACCTTGGGGTTCTGGGAAAGCAGCAGTTTGACCTGGAAAACAAG TTCAAACCCTTCACAGTGGAAATTGTGGACTCGGTGGAAGCCTATGCTACCATGCTGAGA AACATCTTTGACTTCAATGCACTGAAAGAACTGCTTTCTGGTCCAAACCGACTGAAGATC CGTATAGACGCCATGCACGGAGTCGTGGGGCCGTACGTGAAGAAGATCCTGTGTGAGGAG CTGGGAGCCCCCGCAAACTCGGCGGTGAACTGCGTTCCTCTGGAGGACTTTGGGGGCCAC CACCCTGACCCCAACCTCACCTATGCTGCCGACCTGGTGGAGACGATGAAGACAGGAGAG CATGATTTTGGGGCTGCCTTTGATGGAGATGGGGATCGAAACATGATTCTGGGCAAGCAT GGGTTCTTTGTGAACCCTTCAGACTCCGTGGCTGTCATCGCTGCCAACATCTTCAGCATT CCGTATTTCCAGCAAACTGGGGTCCGCGGCTTTGCACGCAGCATGCCCACCAGTGGTGCC CTGGACCGGGTGGCTAATGCTACAAAGATTGCTTTGTACGAGACCCCAACTGGTTGGAAG TTTTTTGGGAATCTGATGGATGCAAGCAAACTGTCCCTTTGTGGGGAGGAGAGCTTCGGA ACGGGTTCTGACCACATCCGTGAGAAGGACGGACTCTGGGCTGTCCTTGCTTGGCTCTCC ATCCTCGCCACCCGCAAGCAGAGTGTGGAGGACATTCTCAAAGATCACTGGCAAAAGTAT GGCCGGAATTTCTTCACCAGGTACGATTACGAAGAGGTGGAAGCTGAGGGTGCCAACAAA ATGATGAAGGAATTGGAGGCTCTGATCTCTGACCGCTCCTTCGTGGGGAAACAGTTCCCA GTGGGTGATAAAGTTTACACTGTGGAGAAAATTGATAACTTTGAATACAGTGATCCTGTG GACGGAAGCATTTCAAGAAATCAGGGCTTGCGGGTCATTTTCGCAGATGGTTCTCGCATC ATCTTTCGACTGAGCGGCACTGGGAGTGCGGGCGCCACCATCCGACTGTACATCGACAGC TATGAGAAGGACCTTGCCAAGATCTACCAGGACCCCCAGGTCATGTTGGCCCCCCTTATT TCCATCGCTCTGAAGATGTCTCAGCTCCAGGAAAGGACGGGTCGCACCGCACCCACTGTT ATCACCTAAGAAGACAGGCCGGATGTGGTACGTCCCTCTGCCCCAGGACCCTCCGCGTCA TCTGACTGAAGAGCATGGACAGAAACGAAGTGTCTTCACCCAGGCTTTGTAGAACTCAGA GTTTCCACTCACCGGTTGTTGACAGATGGTACAATTCCAAGGCCCTGCCCACTGATACGC CTGTAAGTGCCACGTGGGAAAGAGAGAAACAGGACCCAGGGGCTGACAGGAACGACTGTC CATTCCTTTTTGCTCCTTTTTGTGTCCTTACACCTTGCGGCTGCGTGGGTATTTGTCTCC TTAGCACCCAGTCCTGTTTCCACTACAGTGTAGGATGGAGACCGGGCATCGGCTCCTGAG GCCAGTTTCCACCCTCAGGATCTGCCCGGGAAATGACAGCACACGTTCCTTTCTTCCTGG TGAAACTCTCCCCCCATTTATTGTTTACATGTCATCCGGCAAAATGCGGTTTCTGGTGCC TTCTCTCCAATCAGTTCTTTCCTCAGAGTGAGACGTACTTGTCTGCAGATTTCTGCCTTG TTTTGCAACGTAATCCCATTCACACCAAGATTTGGGATATTAAAGCAAAATAAGCTATCA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGGAGCTGCCGCTGCCCCGACCCGGTCCGCGCCCTCACCCCAGAGAAGCCGCAGCCAC AGTCCCGGCCGTCCCCCGGTTGGCAGAGTCCGCTCCGGCCCCAGAAAGCAAACCGCCACC ATGGTGAAGATCGTGACCGTTAAGACCAAGGCGTATCAAGACCAGAAGCCGGGCACGAGC GGGCTGCGGAAGCGGGTGAAGGTGTTTCAGAGCAGCGCCAACTACGCGGAGAATTTCATC CAGAGTATCATCTCCACCGTGGAGCCGGCGCATCGGCAGGAGGCCACCCTGGTGGTGGGC GGGGACGGCAGGTTTTACATGAAGGAGGCCATCCAGCTCATCGTCCGCATCGCCGCCGCC AACGGGATTGGTCGCTTGGTTATTGGACAGAATGGAATCCTCTCCACCCCTGCTGTATCC TGCATCATTAGAAAGATCAAAGCCATTGGTGGGATCATCCTGACAGCCAGCCACAACCCA GGAGGACCCAATGGAGATTTTGGAATCAAATTCAATATTTCCAACGGAGGTCCTGCCCCG GAAGCAATAACGGATAAGATTTTCCAAATCAGCAAGACAATTGAAGAATACGCGATTTGC CCTGACCTGAAAGTAGACCTTGGGGTTCTGGGAAAGCAGCAGTTTGACCTGGAAAACAAG TTCAAACCCTTCACAGTGGAAATTGTGGACTCGGTGGAAGCCTATGCTACCATGCTGAGA AACATCTTTGACTTCAATGCACTGAAAGAACTGCTTTCTGGTCCAAACCGACTGAAGATC CGTATAGACGCCATGCACGGAGTCGTGGGGCCGTACGTGAAGAAGATCCTGTGTGAGGAG CTGGGAGCCCCCGCAAACTCGGCGGTGAACTGCGTTCCTCTGGAGGACTTTGGGGGCCAC CACCCTGACCCCAACCTCACCTATGCTGCCGACCTGGTGGAGACGATGAAGACAGGAGAG CATGATTTTGGGGCTGCCTTTGATGGAGATGGGGATCGAAACATGATTCTGGGCAAGCAT GGGTTCTTTGTGAACCCTTCAGACTCCGTGGCTGTCATCGCTGCCAACATCTTCAGCATT CCGTATTTCCAGCAAACTGGGGTCCGCGGCTTTGCACGCAGCATGCCCACCAGTGGTGCC CTGGACCGGGTGGCTAATGCTACAAAGATTGCTTTGTACGAGACCCCAACTGGTTGGAAG TTTTTTGGGAATCTGATGGATGCAAGCAAACTGTCCCTTTGTGGGGAGGAGAGCTTCGGA ACGGGTTCTGACCACATCCGTGAGAAGGACGGACTCTGGGCTGTCCTTGCTTGGCTCTCC ATCCTCGCCACCCGCAAGCAGAGTGTGGAGGACATTCTCAAAGATCACTGGCAAAAGTAT GGCCGGAATTTCTTCACCAGGTACGATTACGAAGAGGTGGAAGCTGAGGGTGCCAACAAA ATGATGAAGGAATTGGAGGCTCTGATCTCTGACCGCTCCTTCGTGGGGAAACAGTTCCCA GTGGGTGATAAAGTTTACACTGTGGAGAAAATTGATAACTTTGAATACAGTGATCCTGTG GACGGAAGCATTTCAAGAAATCAGGGCTTGCGGGTCATTTTCGCAGATGGTTCTCGCATC ATCTTTCGACTGAGCGGCACTGGGAGTGCGGGCGCCACCATCCGACTGTACATCGACAGC TATGAGAAGGACCTTGCCAAGATCTACCAGGACCCCCAGGTCATGTTGGCCCCCCTTATT TCCATCGCTCTGAAGATGTCTCAGCTCCAGGAAAGGACGGGTCGCACCGCACCCACTGTT ATCACCTAAGAAGACAGGCCGGATGTGGTACGTCCCTCTGCCCCAGGACCCTCCGCGTCA TCTGACTGAAGAGCATGGACAGAAACGAAGTGTCTTCACCCAGGCTTTGTAGAACTCAGA GTTTCCACTCACCGGTTGTTGACAGATGGTACAATTCCAAGGCCCTGCCCACTGATACGC CTGTAAGTGCCACGTGGGAAAGAGAGAAACAGGACCCAGGGGCTGACAGGAACGACTGTC CATTCCTTTTTGCTCCTTTTTGTGTCCTTACACCTTGCGGCTGCGTGGGTATTTGTCTCC TTAGCACCCAGTCCTGTTTCCACTACAGTGTAGGATGGAGACCGGGCATCGGCTCCTGAG GCCAGTTTCCACCCTCAGGATCTGCCCGGGAAATGACAGCACACGTTCCTTTCTTCCTGG TGAAACTCTCCCCCCATTTATTGTTTACATGTCATCCGGCAAAATGCGGTTTCTGGTGCC TTCTCTCCAATCAGTTCTTTCCTCAGAGTGAGACGTACTTGTCTGCAGATTTCTGCCTTG TTTTGCAACGTAATCCCATTCACACCAAGATTTGGGATATTAAAGCAAAATAAGCTATCA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 366-567, gnl|bosTau2|chr8 (21641741-21641540) | |
| 1137-1266, gnl|bosTau2|chr3 (63862599-63862727) | |
| 1137-1266, gnl|Hg17|chr1 (63816366-63816494) | |
| 1137-1266, gnl|Mm7|chr4 (99346413-99346541) | |
| 1397-1585, gnl|bosTau2|chr3 (63877012-63877200) | |
| 1397-1585, gnl|canFam2|chr5 (49526033-49525830) | |
| 1397-1585, gnl|danRer3|chr6 (16371078-16370875) | |
| 1397-1585, gnl|dasNov1|scaffold_14716 (43590-43791) | |
| 1397-1585, gnl|echTel1|scaffold_315848 (7537-7336) | |
| 1397-1585, gnl|fr1|chrUn (67426162-67425958) | |
| 1397-1585, gnl|galGal2|chr8 (28102178-28102381) | |
| 1397-1585, gnl|hg17|chr1 (63829352-63829555) | |
| 1397-1585, gnl|Hg17|chr1 (63829357-63829545) | |
| 1397-1585, gnl|loxAfr1|scaffold_26786 (39363-39566) | |
| 1397-1585, gnl|mm7|chr4 (99358312-99358515) | |
| 1397-1585, gnl|Mm7|chr4 (99358317-99358505) | |
| 1397-1585, gnl|monDom2|scaffold_40 (11153004-11152805) | |
| 1397-1585, gnl|oryCun1|scaffold_201236 (89109-89312) | |
| 1397-1585, gnl|panTro1|chr1 (62166477-62166681) | |
| 1397-1585, gnl|rheMac2|chr1 (66428309-66428512) | |
| 1397-1585, gnl|rn3|chr5 (120653370-120653573) | |
| 1397-1585, gnl|tetNig1|chr1 (15871223-15871030) | |
| 1397-1585, gnl|xenTro1|scaffold_1 (2121658-2121464) | |
| 1713-2400, gnl|bosTau2|chr3 (63882705-63883377) | |
| 1713-2400, gnl|Hg17|chr1 (63837271-63837937) | |
| 1713-2400, gnl|Mm7|chr4 (99363105-99363729) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 366-567, gnl|bosTau2|chr8 (21641741-21641540) | |
| 1137-1266, gnl|bosTau2|chr3 (63862599-63862727) | |
| 1137-1266, gnl|Hg17|chr1 (63816366-63816494) | |
| 1137-1266, gnl|Mm7|chr4 (99346413-99346541) | |
| 1397-1585, gnl|bosTau2|chr3 (63877012-63877200) | |
| 1397-1585, gnl|canFam2|chr5 (49526033-49525830) | |
| 1397-1585, gnl|danRer3|chr6 (16371078-16370875) | |
| 1397-1585, gnl|dasNov1|scaffold_14716 (43590-43791) | |
| 1397-1585, gnl|echTel1|scaffold_315848 (7537-7336) | |
| 1397-1585, gnl|fr1|chrUn (67426162-67425958) | |
| 1397-1585, gnl|galGal2|chr8 (28102178-28102381) | |
| 1397-1585, gnl|hg17|chr1 (63829352-63829555) | |
| 1397-1585, gnl|Hg17|chr1 (63829357-63829545) | |
| 1397-1585, gnl|loxAfr1|scaffold_26786 (39363-39566) | |
| 1397-1585, gnl|mm7|chr4 (99358312-99358515) | |
| 1397-1585, gnl|Mm7|chr4 (99358317-99358505) | |
| 1397-1585, gnl|monDom2|scaffold_40 (11153004-11152805) | |
| 1397-1585, gnl|oryCun1|scaffold_201236 (89109-89312) | |
| 1397-1585, gnl|panTro1|chr1 (62166477-62166681) | |
| 1397-1585, gnl|rheMac2|chr1 (66428309-66428512) | |
| 1397-1585, gnl|rn3|chr5 (120653370-120653573) | |
| 1397-1585, gnl|tetNig1|chr1 (15871223-15871030) | |
| 1397-1585, gnl|xenTro1|scaffold_1 (2121658-2121464) | |
| 1713-2400, gnl|bosTau2|chr3 (63882705-63883377) | |
| 1713-2400, gnl|Hg17|chr1 (63837271-63837937) | |
| 1713-2400, gnl|Mm7|chr4 (99363105-99363729) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| mas (0.84122) | |
| ctl (0.612276) | |
| cli (0.458435) | |
| nms (0.427716) | |
| ldo (0.38801) | |
| sme (0.305437) | |
| ste (0.270416) | |
| ese (0.253004) | |
| eru (0.240096) | |
| jca (0.22792) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cje (0.165235) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| ssp (0.13552) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.84122) | |
| ctl (0.612276) | |
| cli (0.458435) | |
| nms (0.427716) | |
| ldo (0.38801) | |
| sme (0.305437) | |
| ste (0.270416) | |
| ese (0.253004) | |
| eru (0.240096) | |
| jca (0.22792) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cje (0.165235) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| ssp (0.13552) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) |