Ss1.1-Tes1-TES01B110008.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTCTCCTGTGATCTAGAATAGGTACCCTACTTGCTCGGGACTACTTGGATTTCTATCA TCAGGGTACCTGGGATTAAACTACAAGGTTTGGAGTGAGTAGAATTAGAACAAATAACAA TAAACACGACTAACATTTGTTGAGCACTTACCTGTGCCAGGCACTGTGCCAACCTCTGTA TGCAACCTATACCACAGCTCACTACAACACTGGATCCTTAACCCACTGAGCGAGGCCAGG GATCGAACCTTCATCCTCATGGATACTAGTCAGATTCGTTTCTGCTGGGCCACAACGGGA ACTCCAGACAGAGCATTTAGAGTAACAGGCAGTCACCCCCTGTCCTGAATAAACCCTGGA CCCTTCTAAGCTCTGGGGCTTAGAGAGCAGCACTCTCCTGCCGCCTTCCCCCACTGCCAG GGTCCTCATGCCAGGGCCCTGGATTCTCCTGCAGAGTAGCTGGGAGATAGCTCCACATCC CAGCCTGTTCCCCCTCTGCTGAGACCTGGCTGCCGACATGGGGTTCTGGGCTCCAGCTCC AGCCTCCTCAGGCTAATGCTCTCTCTACTCTTTCTCCCTCTGGAGATGAACATCTGCAAC AAGCCCTCTAACAAGACAGCCCCTGAGAAGAGTGTGTGGACAGCGCCTGCACAGGCCAGC GGACCCTCCCCGGAGCTGCAGGGCCAACGGTCCCGCCGGAATGGGTGGAGCTGGCCCCCT CACCCACTCCAGATTGTGGCCTGGCTGCTGTACCTCTTCTTTGCTGTGATTGGCTTTGGG GTCCTTGTTCCCCTTCTGCCTCACCACTGGGTGCCTGCTGGCTATGCTGTATCCTTGGGA AAATGTGGGATTGGTACATGGAAGTGTGGGGGCAATGTTTCCATCGATCCAGCAGATGCC AACGTGCGGGACAAGAGCTATGCAGGGCCCCTGCCCATCTTCAACCGCAGCCAACACGCA CACGTCATTGAAGACCTGCATTGCAACTTGTGTGACGTGGATGTGAGTGCTCGTTCCAAG CACTGCAGCGCCTGCAACAAGTGCGTGTGCGGCTTCGACCACCACTGCAAGTGGCTCAAC AACTGCGTGGGCGAGAGGAACTACTGGCTCTTTCTACACAGTGTGGCATCTGCCTTACTG GGTGTCCTGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTCTCCTGTGATCTAGAATAGGTACCCTACTTGCTCGGGACTACTTGGATTTCTATCA TCAGGGTACCTGGGATTAAACTACAAGGTTTGGAGTGAGTAGAATTAGAACAAATAACAA TAAACACGACTAACATTTGTTGAGCACTTACCTGTGCCAGGCACTGTGCCAACCTCTGTA TGCAACCTATACCACAGCTCACTACAACACTGGATCCTTAACCCACTGAGCGAGGCCAGG GATCGAACCTTCATCCTCATGGATACTAGTCAGATTCGTTTCTGCTGGGCCACAACGGGA ACTCCAGACAGAGCATTTAGAGTAACAGGCAGTCACCCCCTGTCCTGAATAAACCCTGGA CCCTTCTAAGCTCTGGGGCTTAGAGAGCAGCACTCTCCTGCCGCCTTCCCCCACTGCCAG GGTCCTCATGCCAGGGCCCTGGATTCTCCTGCAGAGTAGCTGGGAGATAGCTCCACATCC CAGCCTGTTCCCCCTCTGCTGAGACCTGGCTGCCGACATGGGGTTCTGGGCTCCAGCTCC AGCCTCCTCAGGCTAATGCTCTCTCTACTCTTTCTCCCTCTGGAGATGAACATCTGCAAC AAGCCCTCTAACAAGACAGCCCCTGAGAAGAGTGTGTGGACAGCGCCTGCACAGGCCAGC GGACCCTCCCCGGAGCTGCAGGGCCAACGGTCCCGCCGGAATGGGTGGAGCTGGCCCCCT CACCCACTCCAGATTGTGGCCTGGCTGCTGTACCTCTTCTTTGCTGTGATTGGCTTTGGG GTCCTTGTTCCCCTTCTGCCTCACCACTGGGTGCCTGCTGGCTATGCTGTATCCTTGGGA AAATGTGGGATTGGTACATGGAAGTGTGGGGGCAATGTTTCCATCGATCCAGCAGATGCC AACGTGCGGGACAAGAGCTATGCAGGGCCCCTGCCCATCTTCAACCGCAGCCAACACGCA CACGTCATTGAAGACCTGCATTGCAACTTGTGTGACGTGGATGTGAGTGCTCGTTCCAAG CACTGCAGCGCCTGCAACAAGTGCGTGTGCGGCTTCGACCACCACTGCAAGTGGCTCAAC AACTGCGTGGGCGAGAGGAACTACTGGCTCTTTCTACACAGTGTGGCATCTGCCTTACTG GGTGTCCTGCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-103, + strand, RNAz p=0.600575 | |
| 686-805, + strand, RNAz p=0.643261 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-103, + strand, RNAz p=0.600575 | |
| 686-805, + strand, RNAz p=0.643261 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-180, gnl|bosTau2|chr18 (28582917-28582736) | |
| 1-180, gnl|canFam2|chr5 (85003432-85003062) | |
| 1-180, gnl|hg17|chr16 (65996171-65996574) | |
| 1-180, gnl|Hg17|chr16 (65996387-65996187) | |
| 1-180, gnl|mm7|chr8 (104080618-104080951) | |
| 1-180, gnl|oryCun1|scaffold_188190 (4085-4431) | |
| 1-180, gnl|panTro1|chr18 (60257222-60257625) | |
| 1-180, gnl|rheMac2|chr20 (65705537-65705940) | |
| 1-180, gnl|rn3|chr19 (35303437-35303789) | |
| 370-877, gnl|bosTau2|chr18 (28584577-28584073) | |
| 370-877, gnl|Hg17|chr16 (65998044-65997555) | |
| 370-877, gnl|Mm7|chr8 (104082624-104082139) | |
| 1005-1107, gnl|bosTau2|chr18 (28577925-28577823) | |
| 1005-1107, gnl|canFam2|chr5 (85009585-85009495) | |
| 1005-1107, gnl|danRer3|chrUn (79642641-79642551) | |
| 1005-1107, gnl|dasNov1|scaffold_136999 (2137-2039) | |
| 1005-1107, gnl|echTel1|scaffold_320995 (46470-46557) | |
| 1005-1107, gnl|fr1|chrUn (105661980-105661890) | |
| 1005-1107, gnl|galGal2|chr11 (1161768-1161675) | |
| 1005-1107, gnl|hg17|chr16 (65990752-65990845) | |
| 1005-1107, gnl|Hg17|chr16 (65990860-65990758) | |
| 1005-1107, gnl|loxAfr1|scaffold_18242 (785-695) | |
| 1005-1107, gnl|mm7|chr8 (104075652-104075742) | |
| 1005-1107, gnl|Mm7|chr8 (104075757-104075655) | |
| 1005-1107, gnl|monDom2|scaffold_23 (19423282-19423192) | |
| 1005-1107, gnl|oryCun1|scaffold_157827 (465-375) | |
| 1005-1107, gnl|panTro1|chr18 (60251721-60251814) | |
| 1005-1107, gnl|rheMac2|chr20 (65700174-65700267) | |
| 1005-1107, gnl|rn3|chr19 (35298069-35298159) | |
| 1005-1107, gnl|tetNig1|chrUn_random (6284794-6284884) | |
| 1005-1107, gnl|xenTro1|scaffold_276 (772830-772737) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-180, gnl|bosTau2|chr18 (28582917-28582736) | |
| 1-180, gnl|canFam2|chr5 (85003432-85003062) | |
| 1-180, gnl|hg17|chr16 (65996171-65996574) | |
| 1-180, gnl|Hg17|chr16 (65996387-65996187) | |
| 1-180, gnl|mm7|chr8 (104080618-104080951) | |
| 1-180, gnl|oryCun1|scaffold_188190 (4085-4431) | |
| 1-180, gnl|panTro1|chr18 (60257222-60257625) | |
| 1-180, gnl|rheMac2|chr20 (65705537-65705940) | |
| 1-180, gnl|rn3|chr19 (35303437-35303789) | |
| 370-877, gnl|bosTau2|chr18 (28584577-28584073) | |
| 370-877, gnl|Hg17|chr16 (65998044-65997555) | |
| 370-877, gnl|Mm7|chr8 (104082624-104082139) | |
| 1005-1107, gnl|bosTau2|chr18 (28577925-28577823) | |
| 1005-1107, gnl|canFam2|chr5 (85009585-85009495) | |
| 1005-1107, gnl|danRer3|chrUn (79642641-79642551) | |
| 1005-1107, gnl|dasNov1|scaffold_136999 (2137-2039) | |
| 1005-1107, gnl|echTel1|scaffold_320995 (46470-46557) | |
| 1005-1107, gnl|fr1|chrUn (105661980-105661890) | |
| 1005-1107, gnl|galGal2|chr11 (1161768-1161675) | |
| 1005-1107, gnl|hg17|chr16 (65990752-65990845) | |
| 1005-1107, gnl|Hg17|chr16 (65990860-65990758) | |
| 1005-1107, gnl|loxAfr1|scaffold_18242 (785-695) | |
| 1005-1107, gnl|mm7|chr8 (104075652-104075742) | |
| 1005-1107, gnl|Mm7|chr8 (104075757-104075655) | |
| 1005-1107, gnl|monDom2|scaffold_23 (19423282-19423192) | |
| 1005-1107, gnl|oryCun1|scaffold_157827 (465-375) | |
| 1005-1107, gnl|panTro1|chr18 (60251721-60251814) | |
| 1005-1107, gnl|rheMac2|chr20 (65700174-65700267) | |
| 1005-1107, gnl|rn3|chr19 (35298069-35298159) | |
| 1005-1107, gnl|tetNig1|chrUn_random (6284794-6284884) | |
| 1005-1107, gnl|xenTro1|scaffold_276 (772830-772737) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) |