Non-Coding RNA Search

Ss1.1-Tes1-TES01B120013.5

Sequence:


               
               GCGGCCGCTGCGCCATCCCGGAAGCGCGAGCAAGGCCGCCAGATGTGCAGGCAGCGGAGG
AGGAGGAAGAGATGGACCCCCCGGACTCGGCCTCGAGGGTCTTCTGCAGCCGCATCCTGA
GTATGGTGAATGCAGACGATGTCAATGCCATTATCCTGGCCCAGAAAAACATGCTGGACC
GCTTTGAGAAGACCAATGAGATGCTATTGAACTTCAACAACTTGTCAAGTGCCCGCTTGC
AACAGATGAGTGAGCGCTTCCTGCACCACACAAGGACCCTGGTGGAAATGAAACGGGACC
TGGACAGCATCTTTCGCAGGATCAGGACACTGAAAGGGAAGCTGGCCAGGCAGCACCCGG
AGGCCTTCAGCCACATCCCGGAGGCGTCCCTCCTGGAAGACGAGGATGAAGACCCCATCC
CTCCCAGCACCACAACAACCATTGCCACCTCGGAACAGAGCACAGGCTCATGTGACACCA
GCCCTGACACAGTCTCGCCCTCCCTCAGCCCTGGCTTCGAGGACCTGTCCCATGTCCGGC
CTGGCTCCCCTGCCATCAATGGCCACAGCCATACAGATGACGAGGAGACACCAGGCGAGT
AGCTCTCCTCCTGGGAGCTCCAAGGGGTCTCAGAGCAGCGGCAGCACCAACCCCACATGT
CTGAGGTGGCAGCAGATAGCCCTGCCCCATGATGGTCAGCTCTGCCTCCCTATTCTGTCA
TTTGGGGCCCCCTGGGGGACAAGGCTCCCTCTCTGGAATATGGAATTCCTGGGGATCTTT
CATTCCCACCCCTTCCTCACTGAGAATATCTCTCCTCTGTAGACCCCTCTGCCAGGCCAG
GGGACAAGCAGCCCAGCTGGAGTCATTGGGTTGGGCTCAAGGAAACTTCCAGAGCCAGGC
CTGTGATCTGTTCTGAACAACACTCAGATTCCCAGAGACCAGATCCAGATGTCCCCTGCC
CCAGCACCCTGGTCAGGACCTCCTCAAGGCGGCCAAGCACTGTCATGTCTGAGTTCATCC
TAGCCCATCCCTGCATCTACAAATTCTTGTCTCCTTGCTCCTCCCTCCAATGAAAGTATT
CAGTACTTTCTTCAATCATTAGCTCAAGGTTTCTGAGACAGTTGTGGAAGGTTCGAGACA
GTTGTGGAAGGTTCAAGGCAGAGATTAGCCATCCACTTGGCCTCGAACCTGGTAAGGCCC
ATGTTTCTCTGACCAGAGGTGTGGACTCTGAGGGGCCAGCAGGGCTCTTTCGGGGCCTCT
GTGGAGCAAGCCGAGCCACCATGGAAAACAGAGTTAAGCAGAATATTTTTGTACCCGATG
TTTACAGATGCTGTTGGGAAGTTATCAATAAAAAGACTCTGTTACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTGCGCCATCCCGGAAGCGCGAGCAAGGCCGCCAGATGTGCAGGCAGCGGAGG
AGGAGGAAGAGATGGACCCCCCGGACTCGGCCTCGAGGGTCTTCTGCAGCCGCATCCTGA
GTATGGTGAATGCAGACGATGTCAATGCCATTATCCTGGCCCAGAAAAACATGCTGGACC
GCTTTGAGAAGACCAATGAGATGCTATTGAACTTCAACAACTTGTCAAGTGCCCGCTTGC
AACAGATGAGTGAGCGCTTCCTGCACCACACAAGGACCCTGGTGGAAATGAAACGGGACC
TGGACAGCATCTTTCGCAGGATCAGGACACTGAAAGGGAAGCTGGCCAGGCAGCACCCGG
AGGCCTTCAGCCACATCCCGGAGGCGTCCCTCCTGGAAGACGAGGATGAAGACCCCATCC
CTCCCAGCACCACAACAACCATTGCCACCTCGGAACAGAGCACAGGCTCATGTGACACCA
GCCCTGACACAGTCTCGCCCTCCCTCAGCCCTGGCTTCGAGGACCTGTCCCATGTCCGGC
CTGGCTCCCCTGCCATCAATGGCCACAGCCATACAGATGACGAGGAGACACCAGGCGAGT
AGCTCTCCTCCTGGGAGCTCCAAGGGGTCTCAGAGCAGCGGCAGCACCAACCCCACATGT
CTGAGGTGGCAGCAGATAGCCCTGCCCCATGATGGTCAGCTCTGCCTCCCTATTCTGTCA
TTTGGGGCCCCCTGGGGGACAAGGCTCCCTCTCTGGAATATGGAATTCCTGGGGATCTTT
CATTCCCACCCCTTCCTCACTGAGAATATCTCTCCTCTGTAGACCCCTCTGCCAGGCCAG
GGGACAAGCAGCCCAGCTGGAGTCATTGGGTTGGGCTCAAGGAAACTTCCAGAGCCAGGC
CTGTGATCTGTTCTGAACAACACTCAGATTCCCAGAGACCAGATCCAGATGTCCCCTGCC
CCAGCACCCTGGTCAGGACCTCCTCAAGGCGGCCAAGCACTGTCATGTCTGAGTTCATCC
TAGCCCATCCCTGCATCTACAAATTCTTGTCTCCTTGCTCCTCCCTCCAATGAAAGTATT
CAGTACTTTCTTCAATCATTAGCTCAAGGTTTCTGAGACAGTTGTGGAAGGTTCGAGACA
GTTGTGGAAGGTTCAAGGCAGAGATTAGCCATCCACTTGGCCTCGAACCTGGTAAGGCCC
ATGTTTCTCTGACCAGAGGTGTGGACTCTGAGGGGCCAGCAGGGCTCTTTCGGGGCCTCT
GTGGAGCAAGCCGAGCCACCATGGAAAACAGAGTTAAGCAGAATATTTTTGTACCCGATG
TTTACAGATGCTGTTGGGAAGTTATCAATAAAAAGACTCTGTTACAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               O76098_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               O76098_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-432, gnl|bosTau2|chr23 (31615041-31614623)
               

               
               14-432, gnl|Hg17|chr19 (18533843-18540271)
               

               
               14-432, gnl|Mm7|chr8 (68975204-68969249)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-432, gnl|bosTau2|chr23 (31615041-31614623)
               

               
               14-432, gnl|Hg17|chr19 (18533843-18540271)
               

               
               14-432, gnl|Mm7|chr8 (68975204-68969249)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               nep (0.551775)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               pla (0.267344)
               

               
               gul (0.177588)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.551775)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               pla (0.267344)
               

               
               gul (0.177588)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

	14-432, gnl\|bosTau2\|chr23 (31615041-31614623)
	14-432, gnl\|Hg17\|chr19 (18533843-18540271)
	14-432, gnl\|Mm7\|chr8 (68975204-68969249)

	nep (0.551775)
	nco (0.323468)
	csp (0.322373)
	pla (0.267344)
	gul (0.177588)
	cag (0.151194)
	lnt (0.142308)
	nca (0.136874)
	ova (0.129132)
	cly (0.120642)
	ebs (0.118301)
	cbl (0.114797)