Ss1.1-Tes1-TES01B120042.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGCACCGCCTTCCGCCGCACGTGGCTGCGACGCGATGCCCAAATCCAAGCGCGACAA GAAAGTTTCCCTAACCAAAACTGCCAAGAAGGGCTTGGAACTGAAACAGAACTTGATAGA AGAGCTGCGGAAATGTGTAGACACGTACAAGTTTCTCTTCATCTTCTCCGTGGCCAACAT GAGGAACAGCAAGCTCAAGGACATCCGCAACGCCTGGAAGCACAGCCGGATGTTTTTTGG CAAAAACAAAGTGATGATGGTGGCCTTGGGTCGGAGCCCATGTGATGAGTACAGAGACAA CCTGCATCAGGTTAGCAAGAAGTTGAGGGGTGAAGTGGGTCTCCTTTTCACCAACCGCAC GAAGGAGGAAGTAAACGAGTGGTTCACGAAATACGGGGAGATGGACTACGCCCGAGCAGG GAACAAAGCAACGTTCACCGTGAACCTGGACCCGGGGCCCCTGGAGCAGTTCCCTCACTC CATGGAGCCTCAGCTGAGGCAGCTGGGCCTGCCCACTACCCTCAAGAAAGGTGTGGTGAC CCTGCTGTCAGACTACGAGGTGTGCAAGGAGGGCGACGTGCTAACCCCAGAGCAGGCCCG CATCCTGAAGCTCTTTGGGTATGAAATGGCCGAATTCAAGGTGACCATCAGGTACATGTG GGATGCGCAGTCTGGGAGGTTCCAAGAGATGGGCGACGACTTGCCAGAGAGCGCGCCAGA GTCGGAGGAGGAGTCAGAGGAAGACGACGACGACGACAGCTGATGGGCGCCTGGGACCGC CCCGCCCATCCCAGGTCTCAGCCTGACGGGACCACGTGGGACTGCCGCTTCCTCTAGAGG GAGCAGCGTTTGTTCTGTGGATGAAGACGCAGGAGGGTGACAGGGACAGGCTCTCTTGAT AAATAATAAAAGCTTTTTGGCAGGGTGTCTCCCTGTAGACAGCAAGAGGGACTTCGCTTG GGAAGAAAGCCTCCGGACTTGTTTGGACTCCCAGGATTTTGTTCACATCAAGCCAGTTTC CAGCACTGGCTCCTGTGTGACCAGGCTTCTCTGGCCTGGCCCTTGGTGCCCCTGGCTTGA GGATTTGCAGAGGAAAGCAGGTGCCTGGCCACCGCCCCTCTTCCTACCCCTTCTCCCACC CTCTCCCTCCCAGACCAGGGCCGAGGAGGATCTCGGCAATGACCAGAATAAAGCCACTGC TGAAACCCAGCAGACAGAAATGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGCACCGCCTTCCGCCGCACGTGGCTGCGACGCGATGCCCAAATCCAAGCGCGACAA GAAAGTTTCCCTAACCAAAACTGCCAAGAAGGGCTTGGAACTGAAACAGAACTTGATAGA AGAGCTGCGGAAATGTGTAGACACGTACAAGTTTCTCTTCATCTTCTCCGTGGCCAACAT GAGGAACAGCAAGCTCAAGGACATCCGCAACGCCTGGAAGCACAGCCGGATGTTTTTTGG CAAAAACAAAGTGATGATGGTGGCCTTGGGTCGGAGCCCATGTGATGAGTACAGAGACAA CCTGCATCAGGTTAGCAAGAAGTTGAGGGGTGAAGTGGGTCTCCTTTTCACCAACCGCAC GAAGGAGGAAGTAAACGAGTGGTTCACGAAATACGGGGAGATGGACTACGCCCGAGCAGG GAACAAAGCAACGTTCACCGTGAACCTGGACCCGGGGCCCCTGGAGCAGTTCCCTCACTC CATGGAGCCTCAGCTGAGGCAGCTGGGCCTGCCCACTACCCTCAAGAAAGGTGTGGTGAC CCTGCTGTCAGACTACGAGGTGTGCAAGGAGGGCGACGTGCTAACCCCAGAGCAGGCCCG CATCCTGAAGCTCTTTGGGTATGAAATGGCCGAATTCAAGGTGACCATCAGGTACATGTG GGATGCGCAGTCTGGGAGGTTCCAAGAGATGGGCGACGACTTGCCAGAGAGCGCGCCAGA GTCGGAGGAGGAGTCAGAGGAAGACGACGACGACGACAGCTGATGGGCGCCTGGGACCGC CCCGCCCATCCCAGGTCTCAGCCTGACGGGACCACGTGGGACTGCCGCTTCCTCTAGAGG GAGCAGCGTTTGTTCTGTGGATGAAGACGCAGGAGGGTGACAGGGACAGGCTCTCTTGAT AAATAATAAAAGCTTTTTGGCAGGGTGTCTCCCTGTAGACAGCAAGAGGGACTTCGCTTG GGAAGAAAGCCTCCGGACTTGTTTGGACTCCCAGGATTTTGTTCACATCAAGCCAGTTTC CAGCACTGGCTCCTGTGTGACCAGGCTTCTCTGGCCTGGCCCTTGGTGCCCCTGGCTTGA GGATTTGCAGAGGAAAGCAGGTGCCTGGCCACCGCCCCTCTTCCTACCCCTTCTCCCACC CTCTCCCTCCCAGACCAGGGCCGAGGAGGATCTCGGCAATGACCAGAATAAAGCCACTGC TGAAACCCAGCAGACAGAAATGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 379-544, - strand, RNAz p=0.992415 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 379-544, - strand, RNAz p=0.992415 |
| Aligned organism(s): 94 entry(ies) | More info |
| Aligned organism(s): 94 entry(ies) | Help | Less info |
| 123-229, gnl|bosTau2|chr2 (61172477-61172583) | |
| 123-229, gnl|canFam2|chr13 (4956976-4956872) | |
| 123-229, gnl|canFam2|chr13 (4956870-4956976) | |
| 123-229, gnl|canFam2|chr2 (82257425-82257293) | |
| 123-229, gnl|danRer3|chr11 (42390178-42390066) | |
| 123-229, gnl|danRer3|chr11 (42390173-42390069) | |
| 123-229, gnl|danRer3|chr11 (42390067-42390172) | |
| 123-229, gnl|dasNov1|scaffold_12335 (52835-52966) | |
| 123-229, gnl|dasNov1|scaffold_5853 (31770-31874) | |
| 123-229, gnl|dasNov1|scaffold_5853 (31876-31770) | |
| 123-229, gnl|echTel1|scaffold_311794 (91074-90970) | |
| 123-229, gnl|echTel1|scaffold_311794 (90968-91074) | |
| 123-229, gnl|echTel1|scaffold_312688 (6549-6417) | |
| 123-229, gnl|fr1|chrUn (31500843-31500728) | |
| 123-229, gnl|fr1|chrUn (31500838-31500734) | |
| 123-229, gnl|fr1|chrUn (31500732-31500837) | |
| 123-229, gnl|galGal2|chr21 (4493257-4493372) | |
| 123-229, gnl|hg17|chr1 (19327742-19327874) | |
| 123-229, gnl|Hg17|chr1 (19327746-19327852) | |
| 123-229, gnl|hg17|chr17 (45371571-45371674) | |
| 123-229, gnl|hg17|chr18 (13130301-13130406) | |
| 123-229, gnl|loxAfr1|scaffold_9702 (70538-70670) | |
| 123-229, gnl|loxAfr1|scaffold_9702 (70543-70647) | |
| 123-229, gnl|loxAfr1|scaffold_9702 (70649-70543) | |
| 123-229, gnl|mm7|chr4 (138728166-138728036) | |
| 123-229, gnl|Mm7|chr4 (138728160-138728054) | |
| 123-229, gnl|mm7|chrUn_random (1115107-1115003) | |
| 123-229, gnl|mm7|chrUn_random (1115001-1115107) | |
| 123-229, gnl|monDom2|scaffold_16 (34979668-34979775) | |
| 123-229, gnl|monDom2|scaffold_90 (351316-351448) | |
| 123-229, gnl|monDom2|scaffold_90 (351321-351425) | |
| 123-229, gnl|oryCun1|scaffold_150767 (3826-3722) | |
| 123-229, gnl|oryCun1|scaffold_150767 (3720-3826) | |
| 123-229, gnl|oryCun1|scaffold_171599 (877-758) | |
| 123-229, gnl|panTro1|chr1 (19618825-19618956) | |
| 123-229, gnl|panTro1|chr17_random (4508486-4508381) | |
| 123-229, gnl|panTro1|chr19_random (30980754-30980857) | |
| 123-229, gnl|rheMac2|chr1 (21910203-21910335) | |
| 123-229, gnl|rheMac2|chr16 (34184389-34184493) | |
| 123-229, gnl|rheMac2|chr16 (34184495-34184389) | |
| 123-229, gnl|rn3|chr3 (123490315-123490419) | |
| 123-229, gnl|rn3|chr3 (123490421-123490315) | |
| 123-229, gnl|rn3|chr5 (158161550-158161422) | |
| 123-229, gnl|tetNig1|chr11 (3899514-3899624) | |
| 123-229, gnl|tetNig1|chr11 (3899515-3899619) | |
| 123-229, gnl|tetNig1|chr11 (3899621-3899516) | |
| 123-229, gnl|xenTro1|scaffold_1498 (48093-47970) | |
| 379-544, gnl|bosTau2|chr2 (61174545-61174711) | |
| 379-544, gnl|canFam2|chr13 (4956724-4956563) | |
| 379-544, gnl|canFam2|chr13 (4956567-4956687) | |
| 379-544, gnl|canFam2|chr2 (82256021-82255855) | |
| 379-544, gnl|danRer3|chr11 (42389137-42388980) | |
| 379-544, gnl|danRer3|chr11 (42389130-42388973) | |
| 379-544, gnl|dasNov1|scaffold_12335 (54468-54634) | |
| 379-544, gnl|dasNov1|scaffold_5853 (32022-32183) | |
| 379-544, gnl|dasNov1|scaffold_5853 (32179-32059) | |
| 379-544, gnl|echTel1|scaffold_311794 (90822-90661) | |
| 379-544, gnl|echTel1|scaffold_311794 (90665-90785) | |
| 379-544, gnl|echTel1|scaffold_312688 (5541-5375) | |
| 379-544, gnl|fr1|chrUn (31500347-31500190) | |
| 379-544, gnl|fr1|chrUn (31500340-31500184) | |
| 379-544, gnl|fr1|chrUn (31500183-31500303) | |
| 379-544, gnl|galGal2|chr21 (4494165-4494322) | |
| 379-544, gnl|hg17|chr1 (19329623-19329789) | |
| 379-544, gnl|Hg17|chr1 (19329633-19329799) | |
| 379-544, gnl|hg17|chr17 (45371822-45371983) | |
| 379-544, gnl|hg17|chr18 (13130000-13130118) | |
| 379-544, gnl|loxAfr1|scaffold_9702 (72083-72249) | |
| 379-544, gnl|loxAfr1|scaffold_9702 (72095-72243) | |
| 379-544, gnl|loxAfr1|scaffold_9702 (72247-72127) | |
| 379-544, gnl|mm7|chr4 (138726921-138726759) | |
| 379-544, gnl|Mm7|chr4 (138726913-138726751) | |
| 379-544, gnl|mm7|chrUn_random (1114855-1114694) | |
| 379-544, gnl|mm7|chrUn_random (1114698-1114818) | |
| 379-544, gnl|monDom2|scaffold_16 (34979329-34979487) | |
| 379-544, gnl|monDom2|scaffold_90 (354966-355132) | |
| 379-544, gnl|monDom2|scaffold_90 (354978-355126) | |
| 379-544, gnl|oryCun1|scaffold_150767 (3571-3422) | |
| 379-544, gnl|oryCun1|scaffold_150767 (3575-3414) | |
| 379-544, gnl|oryCun1|scaffold_150767 (3418-3538) | |
| 379-544, gnl|panTro1|chr1 (19620703-19620869) | |
| 379-544, gnl|panTro1|chr17_random (4508783-4508665) | |
| 379-544, gnl|panTro1|chr19_random (30981005-30981166) | |
| 379-544, gnl|rheMac2|chr1 (21912076-21912242) | |
| 379-544, gnl|rheMac2|chr16 (34184630-34184790) | |
| 379-544, gnl|rheMac2|chr16 (34184786-34184667) | |
| 379-544, gnl|rn3|chr3 (123490566-123490727) | |
| 379-544, gnl|rn3|chr3 (123490723-123490603) | |
| 379-544, gnl|rn3|chr5 (158160201-158160040) | |
| 379-544, gnl|tetNig1|chr11 (3900009-3900166) | |
| 379-544, gnl|tetNig1|chr11 (3900016-3900177) | |
| 379-544, gnl|tetNig1|chr11 (3900173-3900053) | |
| 379-544, gnl|xenTro1|scaffold_1498 (40295-40129) | |
| 607-1043, gnl|bosTau2|chr2 (61175279-61175710) |
| Aligned organism(s): 94 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-229, gnl|bosTau2|chr2 (61172477-61172583) | |
| 123-229, gnl|canFam2|chr13 (4956976-4956872) | |
| 123-229, gnl|canFam2|chr13 (4956870-4956976) | |
| 123-229, gnl|canFam2|chr2 (82257425-82257293) | |
| 123-229, gnl|danRer3|chr11 (42390178-42390066) | |
| 123-229, gnl|danRer3|chr11 (42390173-42390069) | |
| 123-229, gnl|danRer3|chr11 (42390067-42390172) | |
| 123-229, gnl|dasNov1|scaffold_12335 (52835-52966) | |
| 123-229, gnl|dasNov1|scaffold_5853 (31770-31874) | |
| 123-229, gnl|dasNov1|scaffold_5853 (31876-31770) | |
| 123-229, gnl|echTel1|scaffold_311794 (91074-90970) | |
| 123-229, gnl|echTel1|scaffold_311794 (90968-91074) | |
| 123-229, gnl|echTel1|scaffold_312688 (6549-6417) | |
| 123-229, gnl|fr1|chrUn (31500843-31500728) | |
| 123-229, gnl|fr1|chrUn (31500838-31500734) | |
| 123-229, gnl|fr1|chrUn (31500732-31500837) | |
| 123-229, gnl|galGal2|chr21 (4493257-4493372) | |
| 123-229, gnl|hg17|chr1 (19327742-19327874) | |
| 123-229, gnl|Hg17|chr1 (19327746-19327852) | |
| 123-229, gnl|hg17|chr17 (45371571-45371674) | |
| 123-229, gnl|hg17|chr18 (13130301-13130406) | |
| 123-229, gnl|loxAfr1|scaffold_9702 (70538-70670) | |
| 123-229, gnl|loxAfr1|scaffold_9702 (70543-70647) | |
| 123-229, gnl|loxAfr1|scaffold_9702 (70649-70543) | |
| 123-229, gnl|mm7|chr4 (138728166-138728036) | |
| 123-229, gnl|Mm7|chr4 (138728160-138728054) | |
| 123-229, gnl|mm7|chrUn_random (1115107-1115003) | |
| 123-229, gnl|mm7|chrUn_random (1115001-1115107) | |
| 123-229, gnl|monDom2|scaffold_16 (34979668-34979775) | |
| 123-229, gnl|monDom2|scaffold_90 (351316-351448) | |
| 123-229, gnl|monDom2|scaffold_90 (351321-351425) | |
| 123-229, gnl|oryCun1|scaffold_150767 (3826-3722) | |
| 123-229, gnl|oryCun1|scaffold_150767 (3720-3826) | |
| 123-229, gnl|oryCun1|scaffold_171599 (877-758) | |
| 123-229, gnl|panTro1|chr1 (19618825-19618956) | |
| 123-229, gnl|panTro1|chr17_random (4508486-4508381) | |
| 123-229, gnl|panTro1|chr19_random (30980754-30980857) | |
| 123-229, gnl|rheMac2|chr1 (21910203-21910335) | |
| 123-229, gnl|rheMac2|chr16 (34184389-34184493) | |
| 123-229, gnl|rheMac2|chr16 (34184495-34184389) | |
| 123-229, gnl|rn3|chr3 (123490315-123490419) | |
| 123-229, gnl|rn3|chr3 (123490421-123490315) | |
| 123-229, gnl|rn3|chr5 (158161550-158161422) | |
| 123-229, gnl|tetNig1|chr11 (3899514-3899624) | |
| 123-229, gnl|tetNig1|chr11 (3899515-3899619) | |
| 123-229, gnl|tetNig1|chr11 (3899621-3899516) | |
| 123-229, gnl|xenTro1|scaffold_1498 (48093-47970) | |
| 379-544, gnl|bosTau2|chr2 (61174545-61174711) | |
| 379-544, gnl|canFam2|chr13 (4956724-4956563) | |
| 379-544, gnl|canFam2|chr13 (4956567-4956687) | |
| 379-544, gnl|canFam2|chr2 (82256021-82255855) | |
| 379-544, gnl|danRer3|chr11 (42389137-42388980) | |
| 379-544, gnl|danRer3|chr11 (42389130-42388973) | |
| 379-544, gnl|dasNov1|scaffold_12335 (54468-54634) | |
| 379-544, gnl|dasNov1|scaffold_5853 (32022-32183) | |
| 379-544, gnl|dasNov1|scaffold_5853 (32179-32059) | |
| 379-544, gnl|echTel1|scaffold_311794 (90822-90661) | |
| 379-544, gnl|echTel1|scaffold_311794 (90665-90785) | |
| 379-544, gnl|echTel1|scaffold_312688 (5541-5375) | |
| 379-544, gnl|fr1|chrUn (31500347-31500190) | |
| 379-544, gnl|fr1|chrUn (31500340-31500184) | |
| 379-544, gnl|fr1|chrUn (31500183-31500303) | |
| 379-544, gnl|galGal2|chr21 (4494165-4494322) | |
| 379-544, gnl|hg17|chr1 (19329623-19329789) | |
| 379-544, gnl|Hg17|chr1 (19329633-19329799) | |
| 379-544, gnl|hg17|chr17 (45371822-45371983) | |
| 379-544, gnl|hg17|chr18 (13130000-13130118) | |
| 379-544, gnl|loxAfr1|scaffold_9702 (72083-72249) | |
| 379-544, gnl|loxAfr1|scaffold_9702 (72095-72243) | |
| 379-544, gnl|loxAfr1|scaffold_9702 (72247-72127) | |
| 379-544, gnl|mm7|chr4 (138726921-138726759) | |
| 379-544, gnl|Mm7|chr4 (138726913-138726751) | |
| 379-544, gnl|mm7|chrUn_random (1114855-1114694) | |
| 379-544, gnl|mm7|chrUn_random (1114698-1114818) | |
| 379-544, gnl|monDom2|scaffold_16 (34979329-34979487) | |
| 379-544, gnl|monDom2|scaffold_90 (354966-355132) | |
| 379-544, gnl|monDom2|scaffold_90 (354978-355126) | |
| 379-544, gnl|oryCun1|scaffold_150767 (3571-3422) | |
| 379-544, gnl|oryCun1|scaffold_150767 (3575-3414) | |
| 379-544, gnl|oryCun1|scaffold_150767 (3418-3538) | |
| 379-544, gnl|panTro1|chr1 (19620703-19620869) | |
| 379-544, gnl|panTro1|chr17_random (4508783-4508665) | |
| 379-544, gnl|panTro1|chr19_random (30981005-30981166) | |
| 379-544, gnl|rheMac2|chr1 (21912076-21912242) | |
| 379-544, gnl|rheMac2|chr16 (34184630-34184790) | |
| 379-544, gnl|rheMac2|chr16 (34184786-34184667) | |
| 379-544, gnl|rn3|chr3 (123490566-123490727) | |
| 379-544, gnl|rn3|chr3 (123490723-123490603) | |
| 379-544, gnl|rn3|chr5 (158160201-158160040) | |
| 379-544, gnl|tetNig1|chr11 (3900009-3900166) | |
| 379-544, gnl|tetNig1|chr11 (3900016-3900177) | |
| 379-544, gnl|tetNig1|chr11 (3900173-3900053) | |
| 379-544, gnl|xenTro1|scaffold_1498 (40295-40129) | |
| 607-1043, gnl|bosTau2|chr2 (61175279-61175710) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| elu (0.385356) | |
| cte (0.29274) | |
| fce (0.271592) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) | |
| jca (0.11396) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| cte (0.29274) | |
| fce (0.271592) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) | |
| jca (0.11396) |