Ss1.1-Tes1-TES01C010029.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTGTTTTTTTCCCCCAGCCTGAGTGCTTTATTTGCGAGAACCACCCACC CCGGACCTGCGCCTTCCAAGGCAGGAAGACTGCCATGTGTTCTCAGAAACTTAGAGCGTC CGGTCAGAAAACTCACATCAGCTTTGAACACAGTTCATTTAGGCGTCCACCCCAGGGCTG GCAGCTGACCGCTGCCCAGGAGGTTAAGACGGACCCAGGCCCGTTAGGGGAGGTGGGGGG GGGGGATGAACACTGAGCAGAGTTTGGGGCGGCCCTGGATTCCTAGGGAGAGGGGACCGT TCCGGGGGCAGCCTTTCACCGACGCGGCTCCCACTCTCCTTTTTAAACGTCGTCCACCTC CTCCCACCAGGGCCCACTTTCAAGACGCTGACTGGGAACAGCGGGCGCTCCCGTCATGGC ACAGCGGAATCCGACCAGGAACCATGAGGAAGCGGGTTCCATCCCTGGCCTCGCACAGAG GATCAAGGATCCGGCGTTGCCGCGAGCTGTGGTGCAGGTCACAGGCGAGGCTCGGATCCG ACGTGGCCGTGGCTGTGGTGTAGGCCGGCAGCTGTAGCTCCAACTGGACCCCCAGCCTGG GAACCGCCACATGGTGCGGGTGTGGCCCTCGGTCACGAAGTGGCGAATGAGAGAAATGTC GGTGTCCAGCTTCTCCAGACACTTGCGGATGTAACTGACCACGGGCAGCACGTGACCCCG ACTCAGCAGGTGCACCATCCTGTCCAGCAGCGTCTTCTTCAGCTCAAGCTGCTCCATCAC GTCCAGCTGGGAGTGCTCCGTCTCAAAGAGCTTGACGAGCAGCTGCAGGACCTGGGGGTG CAGGAGCTGGTGGCAGGTGCTGATCTCATCCAGCAAGGCCAGGTGGACCGGGGTGTGGTC AGTCTGCAGCTGGAAATACCTCGGTTCCGACACCGTCCAGTCCACCCACTTCAGCACACC CATCGCCACCACGGGAAACCTGATGCACTGGTAGAGGGTGCTCAGCTCCGCCACGAGCTC CGACGCCCCCTTGTTCTCGTTACAACACAAGTTGTGAACAGTTTCAACGGCTTTCGATGT GGACTTCAGCTCGTCTTTATTGATGCTCACGCGCTTGTTCTTCTTCCAGGTCTCCACCAC GCTCGCCGCGTACGCCAGGATGTGGATGTACTTGTGCTTGTGGTCCTGGTTGATGCGGGC CCCCGGCTTGAAGAGGGACTGCATGAACAGGTCCAGGAAGGCCGGCACGCGGATGAGCTC CACGGGCGGCGGGTCCATGCTCGTGAACATCTTGAACAGGACGGTGATGTCGGCCGGGTT CAGGGCCCCTTTGGACAGCATGGCCCCCAGGGCCTGGCAAGCCCTGGGGTAGGAGGCCGC TGTGCCCAGGGCCAGCGTGATCTGACTGGCGTCGTGGCCTTTCTCCTGGGCGAAGCGCTG CACCTCCTGCGCGACCCTGCGCACGGCCGAGCCCCCCTGCTCCTCCTGGGCCAGCACGGA CATCATGGCCTGGGCGAACAGGTACGTGTGCTCGCCGTGGCACACCATCTTAGCGAACTC CGGGAGATGTTTCTCAAGGTTTTCCTCTCCTCCATCCAGAATTGTAGCCAGAGAGGTGCG AAGCACCCTAGAAAACACTTCCAGCTGCTGGCAGGCTGTGGACACGCTGGTTATCTCCCC TTGGTATCCCGCGTCGGAAATAAGCTTGACAGTGAAGTTAAGCATCAAACAGTCCGGGTG GGCTTCAGCCAGTTTGTAGAACAGGTCCCTCCACGTGGTGTGTGCGATCATCTGTTCCAG CCAAGCGGGGGTCTCGCCTTCCTCAGTGAAGATGGAATCCGCTTTCCGAGGGTCGAAATG TTTGATCAACAAACTCTTCAAGTGATTTTCCACAGTTTCCTGAACCTGCACTGGTTCGAC ACCTGTCTGAATGAGCCACTCAGCCAGGAGGTTGACGGTCTGGGCCACGGCCGTGTAGTT TTCTGATAAGAGCTGGATAACATTCTCCGGAGACCCTCCTGCCTGAAAATACCTCTTCAG GGTGTTGAAGATGGAGGGCTCCATGATGTAATCCCGGGTGGAAAACTTATGCAGGCATTC TTGCTGGACCTCCGCGTCATCCTCGCCCTCTCCGTAATCATCCTCCTGCTGGCCGCCGTC CGCCTCGTCGCCCCACTCGGCCGCGCTCCCGAAGTAATCTTCGTCCATGATGGCGCCCGG CGCGGCCCCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTGTTTTTTTCCCCCAGCCTGAGTGCTTTATTTGCGAGAACCACCCACC CCGGACCTGCGCCTTCCAAGGCAGGAAGACTGCCATGTGTTCTCAGAAACTTAGAGCGTC CGGTCAGAAAACTCACATCAGCTTTGAACACAGTTCATTTAGGCGTCCACCCCAGGGCTG GCAGCTGACCGCTGCCCAGGAGGTTAAGACGGACCCAGGCCCGTTAGGGGAGGTGGGGGG GGGGGATGAACACTGAGCAGAGTTTGGGGCGGCCCTGGATTCCTAGGGAGAGGGGACCGT TCCGGGGGCAGCCTTTCACCGACGCGGCTCCCACTCTCCTTTTTAAACGTCGTCCACCTC CTCCCACCAGGGCCCACTTTCAAGACGCTGACTGGGAACAGCGGGCGCTCCCGTCATGGC ACAGCGGAATCCGACCAGGAACCATGAGGAAGCGGGTTCCATCCCTGGCCTCGCACAGAG GATCAAGGATCCGGCGTTGCCGCGAGCTGTGGTGCAGGTCACAGGCGAGGCTCGGATCCG ACGTGGCCGTGGCTGTGGTGTAGGCCGGCAGCTGTAGCTCCAACTGGACCCCCAGCCTGG GAACCGCCACATGGTGCGGGTGTGGCCCTCGGTCACGAAGTGGCGAATGAGAGAAATGTC GGTGTCCAGCTTCTCCAGACACTTGCGGATGTAACTGACCACGGGCAGCACGTGACCCCG ACTCAGCAGGTGCACCATCCTGTCCAGCAGCGTCTTCTTCAGCTCAAGCTGCTCCATCAC GTCCAGCTGGGAGTGCTCCGTCTCAAAGAGCTTGACGAGCAGCTGCAGGACCTGGGGGTG CAGGAGCTGGTGGCAGGTGCTGATCTCATCCAGCAAGGCCAGGTGGACCGGGGTGTGGTC AGTCTGCAGCTGGAAATACCTCGGTTCCGACACCGTCCAGTCCACCCACTTCAGCACACC CATCGCCACCACGGGAAACCTGATGCACTGGTAGAGGGTGCTCAGCTCCGCCACGAGCTC CGACGCCCCCTTGTTCTCGTTACAACACAAGTTGTGAACAGTTTCAACGGCTTTCGATGT GGACTTCAGCTCGTCTTTATTGATGCTCACGCGCTTGTTCTTCTTCCAGGTCTCCACCAC GCTCGCCGCGTACGCCAGGATGTGGATGTACTTGTGCTTGTGGTCCTGGTTGATGCGGGC CCCCGGCTTGAAGAGGGACTGCATGAACAGGTCCAGGAAGGCCGGCACGCGGATGAGCTC CACGGGCGGCGGGTCCATGCTCGTGAACATCTTGAACAGGACGGTGATGTCGGCCGGGTT CAGGGCCCCTTTGGACAGCATGGCCCCCAGGGCCTGGCAAGCCCTGGGGTAGGAGGCCGC TGTGCCCAGGGCCAGCGTGATCTGACTGGCGTCGTGGCCTTTCTCCTGGGCGAAGCGCTG CACCTCCTGCGCGACCCTGCGCACGGCCGAGCCCCCCTGCTCCTCCTGGGCCAGCACGGA CATCATGGCCTGGGCGAACAGGTACGTGTGCTCGCCGTGGCACACCATCTTAGCGAACTC CGGGAGATGTTTCTCAAGGTTTTCCTCTCCTCCATCCAGAATTGTAGCCAGAGAGGTGCG AAGCACCCTAGAAAACACTTCCAGCTGCTGGCAGGCTGTGGACACGCTGGTTATCTCCCC TTGGTATCCCGCGTCGGAAATAAGCTTGACAGTGAAGTTAAGCATCAAACAGTCCGGGTG GGCTTCAGCCAGTTTGTAGAACAGGTCCCTCCACGTGGTGTGTGCGATCATCTGTTCCAG CCAAGCGGGGGTCTCGCCTTCCTCAGTGAAGATGGAATCCGCTTTCCGAGGGTCGAAATG TTTGATCAACAAACTCTTCAAGTGATTTTCCACAGTTTCCTGAACCTGCACTGGTTCGAC ACCTGTCTGAATGAGCCACTCAGCCAGGAGGTTGACGGTCTGGGCCACGGCCGTGTAGTT TTCTGATAAGAGCTGGATAACATTCTCCGGAGACCCTCCTGCCTGAAAATACCTCTTCAG GGTGTTGAAGATGGAGGGCTCCATGATGTAATCCCGGGTGGAAAACTTATGCAGGCATTC TTGCTGGACCTCCGCGTCATCCTCGCCCTCTCCGTAATCATCCTCCTGCTGGCCGCCGTC CGCCTCGTCGCCCCACTCGGCCGCGCTCCCGAAGTAATCTTCGTCCATGATGGCGCCCGG CGCGGCCCCCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1303-1420, + strand, RNAz p=0.540844 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1303-1420, + strand, RNAz p=0.540844 |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 627-772, gnl|bosTau2|chr13 (37769391-37769536) | |
| 627-772, gnl|Hg17|chr20 (57002215-57002070) | |
| 627-772, gnl|Mm7|chr2 (174171024-174170879) | |
| 978-1121, gnl|bosTau2|chr13 (37770787-37770930) | |
| 978-1121, gnl|canFam2|chr24 (46720527-46720692) | |
| 978-1121, gnl|danRer3|chrNA (107283356-107283205) | |
| 978-1121, gnl|fr1|chrUn (176355503-176355681) | |
| 978-1121, gnl|galGal2|chr20 (10422297-10422126) | |
| 978-1121, gnl|hg17|chr20 (57000325-57000499) | |
| 978-1121, gnl|Hg17|chr20 (57000472-57000329) | |
| 978-1121, gnl|loxAfr1|scaffold_133544 (306-144) | |
| 978-1121, gnl|mm7|chr2 (174169502-174169654) | |
| 978-1121, gnl|Mm7|chr2 (174169649-174169506) | |
| 978-1121, gnl|monDom2|scaffold_1 (173719926-173720082) | |
| 978-1121, gnl|oryCun1|scaffold_113441 (1412-1564) | |
| 978-1121, gnl|panTro1|chr21 (59995170-59995344) | |
| 978-1121, gnl|rheMac2|chr10 (5535612-5535438) | |
| 978-1121, gnl|tetNig1|chr11 (2149181-2149030) | |
| 978-1121, gnl|xenTro1|scaffold_948 (33440-33288) | |
| 1255-1420, gnl|bosTau2|chr13 (37771755-37771920) | |
| 1255-1420, gnl|canFam2|chr24 (46719498-46719642) | |
| 1255-1420, gnl|danRer3|chrNA (107285135-107284995) | |
| 1255-1420, gnl|dasNov1|scaffold_44068 (8595-8434) | |
| 1255-1420, gnl|echTel1|scaffold_318923 (42478-42321) | |
| 1255-1420, gnl|fr1|chrUn (176355010-176355137) | |
| 1255-1420, gnl|galGal2|chr20 (10423562-10423424) | |
| 1255-1420, gnl|hg17|chr20 (56999338-56999482) | |
| 1255-1420, gnl|Hg17|chr20 (56999525-56999360) | |
| 1255-1420, gnl|loxAfr1|scaffold_133544 (1499-1359) | |
| 1255-1420, gnl|mm7|chr2 (174168357-174168499) | |
| 1255-1420, gnl|Mm7|chr2 (174168542-174168377) | |
| 1255-1420, gnl|monDom2|scaffold_1 (173718859-173719001) | |
| 1255-1420, gnl|oryCun1|scaffold_113441 (647-791) | |
| 1255-1420, gnl|panTro1|chr21 (59994183-59994327) | |
| 1255-1420, gnl|rheMac2|chr10 (5536505-5536361) | |
| 1255-1420, gnl|tetNig1|chr11 (2149690-2149546) | |
| 1255-1420, gnl|xenTro1|scaffold_948 (34248-34109) | |
| 1422-1551, gnl|bosTau2|chr13 (37772549-37772678) | |
| 1422-1551, gnl|canFam2|chr24 (46718701-46718803) | |
| 1422-1551, gnl|danRer3|chrNA (107285341-107285242) | |
| 1422-1551, gnl|dasNov1|scaffold_44068 (9317-9215) | |
| 1422-1551, gnl|fr1|chrUn (176354777-176354879) | |
| 1422-1551, gnl|galGal2|chr20 (10424120-10424019) | |
| 1422-1551, gnl|hg17|chr20 (56998302-56998404) | |
| 1422-1551, gnl|loxAfr1|scaffold_31620 (549-447) | |
| 1422-1551, gnl|mm7|chr2 (174167764-174167866) | |
| 1422-1551, gnl|Mm7|chr2 (174167899-174167770) | |
| 1422-1551, gnl|monDom2|scaffold_1 (173717570-173717672) | |
| 1422-1551, gnl|oryCun1|scaffold_5130 (5270-5372) | |
| 1422-1551, gnl|panTro1|chr21 (59993148-59993250) | |
| 1422-1551, gnl|rheMac2|chr10 (5537507-5537405) | |
| 1422-1551, gnl|tetNig1|chr11 (2149876-2149774) | |
| 1553-1731, gnl|bosTau2|chr13 (37772883-37773062) | |
| 1553-1731, gnl|Hg17|chr20 (56998089-56997911) | |
| 1553-1731, gnl|Mm7|chr2 (174167597-174167421) | |
| 1920-2034, gnl|bosTau2|chr13 (37775496-37775610) | |
| 1920-2034, gnl|canFam2|chr24 (46714896-46715031) | |
| 1920-2034, gnl|danRer3|chrNA (107291164-107291043) | |
| 1920-2034, gnl|dasNov1|scaffold_44068 (12344-12207) | |
| 1920-2034, gnl|fr1|chrUn (176353414-176353544) | |
| 1920-2034, gnl|galGal2|chr20 (10427699-10427564) | |
| 1920-2034, gnl|hg17|chr20 (56995191-56995328) | |
| 1920-2034, gnl|Hg17|chr20 (56995316-56995202) | |
| 1920-2034, gnl|loxAfr1|scaffold_31620 (4123-3990) | |
| 1920-2034, gnl|mm7|chr2 (174164705-174164843) | |
| 1920-2034, gnl|Mm7|chr2 (174164830-174164716) | |
| 1920-2034, gnl|monDom2|scaffold_1 (173712250-173712392) | |
| 1920-2034, gnl|oryCun1|scaffold_5130 (2662-2797) | |
| 1920-2034, gnl|panTro1|chr21 (59990038-59990175) | |
| 1920-2034, gnl|rheMac2|chr10 (5540614-5540477) | |
| 1920-2034, gnl|rn3|chr1 (5160717-5160817) | |
| 1920-2034, gnl|tetNig1|chr11 (2151055-2150935) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 627-772, gnl|bosTau2|chr13 (37769391-37769536) | |
| 627-772, gnl|Hg17|chr20 (57002215-57002070) | |
| 627-772, gnl|Mm7|chr2 (174171024-174170879) | |
| 978-1121, gnl|bosTau2|chr13 (37770787-37770930) | |
| 978-1121, gnl|canFam2|chr24 (46720527-46720692) | |
| 978-1121, gnl|danRer3|chrNA (107283356-107283205) | |
| 978-1121, gnl|fr1|chrUn (176355503-176355681) | |
| 978-1121, gnl|galGal2|chr20 (10422297-10422126) | |
| 978-1121, gnl|hg17|chr20 (57000325-57000499) | |
| 978-1121, gnl|Hg17|chr20 (57000472-57000329) | |
| 978-1121, gnl|loxAfr1|scaffold_133544 (306-144) | |
| 978-1121, gnl|mm7|chr2 (174169502-174169654) | |
| 978-1121, gnl|Mm7|chr2 (174169649-174169506) | |
| 978-1121, gnl|monDom2|scaffold_1 (173719926-173720082) | |
| 978-1121, gnl|oryCun1|scaffold_113441 (1412-1564) | |
| 978-1121, gnl|panTro1|chr21 (59995170-59995344) | |
| 978-1121, gnl|rheMac2|chr10 (5535612-5535438) | |
| 978-1121, gnl|tetNig1|chr11 (2149181-2149030) | |
| 978-1121, gnl|xenTro1|scaffold_948 (33440-33288) | |
| 1255-1420, gnl|bosTau2|chr13 (37771755-37771920) | |
| 1255-1420, gnl|canFam2|chr24 (46719498-46719642) | |
| 1255-1420, gnl|danRer3|chrNA (107285135-107284995) | |
| 1255-1420, gnl|dasNov1|scaffold_44068 (8595-8434) | |
| 1255-1420, gnl|echTel1|scaffold_318923 (42478-42321) | |
| 1255-1420, gnl|fr1|chrUn (176355010-176355137) | |
| 1255-1420, gnl|galGal2|chr20 (10423562-10423424) | |
| 1255-1420, gnl|hg17|chr20 (56999338-56999482) | |
| 1255-1420, gnl|Hg17|chr20 (56999525-56999360) | |
| 1255-1420, gnl|loxAfr1|scaffold_133544 (1499-1359) | |
| 1255-1420, gnl|mm7|chr2 (174168357-174168499) | |
| 1255-1420, gnl|Mm7|chr2 (174168542-174168377) | |
| 1255-1420, gnl|monDom2|scaffold_1 (173718859-173719001) | |
| 1255-1420, gnl|oryCun1|scaffold_113441 (647-791) | |
| 1255-1420, gnl|panTro1|chr21 (59994183-59994327) | |
| 1255-1420, gnl|rheMac2|chr10 (5536505-5536361) | |
| 1255-1420, gnl|tetNig1|chr11 (2149690-2149546) | |
| 1255-1420, gnl|xenTro1|scaffold_948 (34248-34109) | |
| 1422-1551, gnl|bosTau2|chr13 (37772549-37772678) | |
| 1422-1551, gnl|canFam2|chr24 (46718701-46718803) | |
| 1422-1551, gnl|danRer3|chrNA (107285341-107285242) | |
| 1422-1551, gnl|dasNov1|scaffold_44068 (9317-9215) | |
| 1422-1551, gnl|fr1|chrUn (176354777-176354879) | |
| 1422-1551, gnl|galGal2|chr20 (10424120-10424019) | |
| 1422-1551, gnl|hg17|chr20 (56998302-56998404) | |
| 1422-1551, gnl|loxAfr1|scaffold_31620 (549-447) | |
| 1422-1551, gnl|mm7|chr2 (174167764-174167866) | |
| 1422-1551, gnl|Mm7|chr2 (174167899-174167770) | |
| 1422-1551, gnl|monDom2|scaffold_1 (173717570-173717672) | |
| 1422-1551, gnl|oryCun1|scaffold_5130 (5270-5372) | |
| 1422-1551, gnl|panTro1|chr21 (59993148-59993250) | |
| 1422-1551, gnl|rheMac2|chr10 (5537507-5537405) | |
| 1422-1551, gnl|tetNig1|chr11 (2149876-2149774) | |
| 1553-1731, gnl|bosTau2|chr13 (37772883-37773062) | |
| 1553-1731, gnl|Hg17|chr20 (56998089-56997911) | |
| 1553-1731, gnl|Mm7|chr2 (174167597-174167421) | |
| 1920-2034, gnl|bosTau2|chr13 (37775496-37775610) | |
| 1920-2034, gnl|canFam2|chr24 (46714896-46715031) | |
| 1920-2034, gnl|danRer3|chrNA (107291164-107291043) | |
| 1920-2034, gnl|dasNov1|scaffold_44068 (12344-12207) | |
| 1920-2034, gnl|fr1|chrUn (176353414-176353544) | |
| 1920-2034, gnl|galGal2|chr20 (10427699-10427564) | |
| 1920-2034, gnl|hg17|chr20 (56995191-56995328) | |
| 1920-2034, gnl|Hg17|chr20 (56995316-56995202) | |
| 1920-2034, gnl|loxAfr1|scaffold_31620 (4123-3990) | |
| 1920-2034, gnl|mm7|chr2 (174164705-174164843) | |
| 1920-2034, gnl|Mm7|chr2 (174164830-174164716) | |
| 1920-2034, gnl|monDom2|scaffold_1 (173712250-173712392) | |
| 1920-2034, gnl|oryCun1|scaffold_5130 (2662-2797) | |
| 1920-2034, gnl|panTro1|chr21 (59990038-59990175) | |
| 1920-2034, gnl|rheMac2|chr10 (5540614-5540477) | |
| 1920-2034, gnl|rn3|chr1 (5160717-5160817) | |
| 1920-2034, gnl|tetNig1|chr11 (2151055-2150935) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| cbr (5.75889) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| eru (0.240096) | |
| cty (0.20816) | |
| fli (0.202881) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (5.75889) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| eru (0.240096) | |
| cty (0.20816) | |
| fli (0.202881) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| jej (0.0989218) |