Ss1.1-Tes1-TES01C010047.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGTCAACTTCCCTGGGCGGGACAGAACTCAGAACCTGGTCTGCAACATGCGGGCGGCG GGGCAGTTACTGAGGGCCTGTTCCCAGACGTGGAAGTCGGTGCGGATGGCCAGCACCGGG GTGGAGCGCCGAAAACCGCTGGAGAATAAGGTGGCACTAGTAACAGCCTCCACTGACGGG ATCGGCCTCGCCATCGCCCGGCGTCTGGCCCAGGATGGGGCCCACGTGGTGGTCAGCAGC CGGAAGCAGGAGAATGTGGACCGGACAGTGGCAACACTGCAGGGGGAGGGGCTGAGCGTG ACGGGCACCGTGTGCCACGTGGGGAAGGCCGAGGACCGGGAGCGACTGGTGGCCATGGCT GTGAACCTTCACGGGGGCGTGGACATCCTGGTCTCCAATGCAGCCGTCAACCCATTCTTT GGAAACATCATAGATGCCACTGAGGAGGTGTGGGACAAGATTCTGCACGTTAACGTGAAG GCCACAGTCCTGATGACAAAGGCAGTGGTGCCGGAGATGGAGAAACGAGGAGGCGGCTCA GTGTTGATCGTGTCCTCCGTTGGAGCCTACCACCCATTTCCCAATCTGGGCCCTTACAAT GTTAGTAAAACAGCCTTGCTGGGCCTCACCAAGAACCTGGCCGTAGAGCTGGCCCCAAGG AACATTAGGGTGAACTGCCTGGCGCCTGGACTCATCAAGACTAACTTCAGCCAGGTGTTG TGGATGGATAAGGCAAGAAAGGAGTACATGAAAGAAAGCTTGCGAATCAGAAGGTTAGGC AATCCAGAGGACTGTGCGGGCATCGTGTCTTTCCTATGCTCTGAAGATGCCAGCTACATC ACTGGGGAGACAGTGGTAGTGGGTGGAGGGACCGCATCCCGCCTCTGAGGACCTGGAGAG CATCCACCAGGGCAGAGATTGGGCTCCAGCTCCTGTTCCAGCATTCATCAACTGGTTTCC CACCTCTGCCTAGCATTCTGCTCACAATACACCATAACCCCTACCCACCCCCCCCAAATC AGTTCTGCCCTGTGAAAAGAGCCAGCGTCCTTGTCCTCTGCTGTCAAGCTGTGGTCTAAT GAGGATTTTCCCTGTTGCTGTAGCCTTCAATAAAGACCTCCCCTGAGAGCACAAGGTAGA CCTGCTCAGAGGGCTGAGTCTACCTTAGCAAAGATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGTCAACTTCCCTGGGCGGGACAGAACTCAGAACCTGGTCTGCAACATGCGGGCGGCG GGGCAGTTACTGAGGGCCTGTTCCCAGACGTGGAAGTCGGTGCGGATGGCCAGCACCGGG GTGGAGCGCCGAAAACCGCTGGAGAATAAGGTGGCACTAGTAACAGCCTCCACTGACGGG ATCGGCCTCGCCATCGCCCGGCGTCTGGCCCAGGATGGGGCCCACGTGGTGGTCAGCAGC CGGAAGCAGGAGAATGTGGACCGGACAGTGGCAACACTGCAGGGGGAGGGGCTGAGCGTG ACGGGCACCGTGTGCCACGTGGGGAAGGCCGAGGACCGGGAGCGACTGGTGGCCATGGCT GTGAACCTTCACGGGGGCGTGGACATCCTGGTCTCCAATGCAGCCGTCAACCCATTCTTT GGAAACATCATAGATGCCACTGAGGAGGTGTGGGACAAGATTCTGCACGTTAACGTGAAG GCCACAGTCCTGATGACAAAGGCAGTGGTGCCGGAGATGGAGAAACGAGGAGGCGGCTCA GTGTTGATCGTGTCCTCCGTTGGAGCCTACCACCCATTTCCCAATCTGGGCCCTTACAAT GTTAGTAAAACAGCCTTGCTGGGCCTCACCAAGAACCTGGCCGTAGAGCTGGCCCCAAGG AACATTAGGGTGAACTGCCTGGCGCCTGGACTCATCAAGACTAACTTCAGCCAGGTGTTG TGGATGGATAAGGCAAGAAAGGAGTACATGAAAGAAAGCTTGCGAATCAGAAGGTTAGGC AATCCAGAGGACTGTGCGGGCATCGTGTCTTTCCTATGCTCTGAAGATGCCAGCTACATC ACTGGGGAGACAGTGGTAGTGGGTGGAGGGACCGCATCCCGCCTCTGAGGACCTGGAGAG CATCCACCAGGGCAGAGATTGGGCTCCAGCTCCTGTTCCAGCATTCATCAACTGGTTTCC CACCTCTGCCTAGCATTCTGCTCACAATACACCATAACCCCTACCCACCCCCCCCAAATC AGTTCTGCCCTGTGAAAAGAGCCAGCGTCCTTGTCCTCTGCTGTCAAGCTGTGGTCTAAT GAGGATTTTCCCTGTTGCTGTAGCCTTCAATAAAGACCTCCCCTGAGAGCACAAGGTAGA CCTGCTCAGAGGGCTGAGTCTACCTTAGCAAAGATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 215-334, + strand, RNAz p=0.952641 | |
| 908-1016, - strand, RNAz p=0.99942 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 215-334, + strand, RNAz p=0.952641 | |
| 908-1016, - strand, RNAz p=0.99942 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 176-358, gnl|bosTau2|chr10 (12457090-12456908) | |
| 176-358, gnl|canFam2|chr8 (6844544-6844689) | |
| 176-358, gnl|danRer3|chr7 (11773981-11774124) | |
| 176-358, gnl|dasNov1|scaffold_34237 (13155-13009) | |
| 176-358, gnl|echTel1|scaffold_317771 (46745-46892) | |
| 176-358, gnl|fr1|chrUn (223139076-223139219) | |
| 176-358, gnl|hg17|chr14 (23178212-23178359) | |
| 176-358, gnl|Hg17|chr14 (23576788-23576970) | |
| 176-358, gnl|loxAfr1|scaffold_14241 (17993-18140) | |
| 176-358, gnl|mm7|chr14 (50036144-50036287) | |
| 176-358, gnl|Mm7|chr14 (50346413-50346595) | |
| 176-358, gnl|monDom2|scaffold_12 (25946024-25945878) | |
| 176-358, gnl|oryCun1|scaffold_144688 (7208-7351) | |
| 176-358, gnl|panTro1|chr15 (22435785-22435918) | |
| 176-358, gnl|rheMac2|chr7 (86487712-86487859) | |
| 176-358, gnl|rn3|chr15 (33286044-33286153) | |
| 176-358, gnl|tetNig1|chrUn_random (21374997-21375140) | |
| 586-727, gnl|bosTau2|chr10 (12449542-12449401) | |
| 586-727, gnl|canFam2|chr8 (7061793-7061958) | |
| 586-727, gnl|danRer3|chr7 (11774855-11774985) | |
| 586-727, gnl|dasNov1|scaffold_25606 (18356-18199) | |
| 586-727, gnl|echTel1|scaffold_158666 (4030-3878) | |
| 586-727, gnl|fr1|chrUn (223139762-223139913) | |
| 586-727, gnl|hg17|chr14 (23505308-23505473) | |
| 586-727, gnl|Hg17|chr14 (23587729-23587870) | |
| 586-727, gnl|loxAfr1|scaffold_1306 (51231-51396) | |
| 586-727, gnl|mm7|chr14 (50354428-50354593) | |
| 586-727, gnl|Mm7|chr14 (50354455-50354596) | |
| 586-727, gnl|monDom2|scaffold_12 (25732909-25732739) | |
| 586-727, gnl|oryCun1|scaffold_211218 (4745-4886) | |
| 586-727, gnl|panTro1|chr15 (22447485-22447650) | |
| 586-727, gnl|rheMac2|chr7 (86854965-86855130) | |
| 586-727, gnl|rn3|chr15 (33634357-33634521) | |
| 586-727, gnl|tetNig1|chrUn_random (21376049-21376186) | |
| 772-1016, gnl|bosTau2|chr10 (12447423-12447170) | |
| 772-1016, gnl|Hg17|chr14 (23589901-23590125) | |
| 772-1016, gnl|Mm7|chr14 (50356685-50356904) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 176-358, gnl|bosTau2|chr10 (12457090-12456908) | |
| 176-358, gnl|canFam2|chr8 (6844544-6844689) | |
| 176-358, gnl|danRer3|chr7 (11773981-11774124) | |
| 176-358, gnl|dasNov1|scaffold_34237 (13155-13009) | |
| 176-358, gnl|echTel1|scaffold_317771 (46745-46892) | |
| 176-358, gnl|fr1|chrUn (223139076-223139219) | |
| 176-358, gnl|hg17|chr14 (23178212-23178359) | |
| 176-358, gnl|Hg17|chr14 (23576788-23576970) | |
| 176-358, gnl|loxAfr1|scaffold_14241 (17993-18140) | |
| 176-358, gnl|mm7|chr14 (50036144-50036287) | |
| 176-358, gnl|Mm7|chr14 (50346413-50346595) | |
| 176-358, gnl|monDom2|scaffold_12 (25946024-25945878) | |
| 176-358, gnl|oryCun1|scaffold_144688 (7208-7351) | |
| 176-358, gnl|panTro1|chr15 (22435785-22435918) | |
| 176-358, gnl|rheMac2|chr7 (86487712-86487859) | |
| 176-358, gnl|rn3|chr15 (33286044-33286153) | |
| 176-358, gnl|tetNig1|chrUn_random (21374997-21375140) | |
| 586-727, gnl|bosTau2|chr10 (12449542-12449401) | |
| 586-727, gnl|canFam2|chr8 (7061793-7061958) | |
| 586-727, gnl|danRer3|chr7 (11774855-11774985) | |
| 586-727, gnl|dasNov1|scaffold_25606 (18356-18199) | |
| 586-727, gnl|echTel1|scaffold_158666 (4030-3878) | |
| 586-727, gnl|fr1|chrUn (223139762-223139913) | |
| 586-727, gnl|hg17|chr14 (23505308-23505473) | |
| 586-727, gnl|Hg17|chr14 (23587729-23587870) | |
| 586-727, gnl|loxAfr1|scaffold_1306 (51231-51396) | |
| 586-727, gnl|mm7|chr14 (50354428-50354593) | |
| 586-727, gnl|Mm7|chr14 (50354455-50354596) | |
| 586-727, gnl|monDom2|scaffold_12 (25732909-25732739) | |
| 586-727, gnl|oryCun1|scaffold_211218 (4745-4886) | |
| 586-727, gnl|panTro1|chr15 (22447485-22447650) | |
| 586-727, gnl|rheMac2|chr7 (86854965-86855130) | |
| 586-727, gnl|rn3|chr15 (33634357-33634521) | |
| 586-727, gnl|tetNig1|chrUn_random (21376049-21376186) | |
| 772-1016, gnl|bosTau2|chr10 (12447423-12447170) | |
| 772-1016, gnl|Hg17|chr14 (23589901-23590125) | |
| 772-1016, gnl|Mm7|chr14 (50356685-50356904) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cov (0.396458) | |
| che (0.272628) | |
| eep (0.245128) | |
| nms (0.213858) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ese (0.126502) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| che (0.272628) | |
| eep (0.245128) | |
| nms (0.213858) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ese (0.126502) |