Non-Coding RNA Search

Ss1.1-Tes1-TES01C020009.5

Sequence:


               
               GGTGCTGGTATTTAGAGCGCAGCGGCTGACGGGCCGGATCCCCTTCGCAGCCGCTTCAGC
GCTCGCTTCGCGCACCTCGCAGCCTGCCGCGCCCGGCCCGGCCTCGTCCCCGCCTCGACC
TGCTGAGCTCGCCCCCTCCCCACCCGCAGACATGTCCGAGGCCAAGAGCGGCCCCGAGTA
CGCCGCCTTTTTCGCGGTCATGGGCGCCTCGGCCGCCATGGTCTTCAGCGCCCTGGGTGC
CGCCTATGGGACGGCCAAGAGCGGCACTGGCATCGCAGCCATGTCTGTCATGCGGCCAGA
GCTGATCATGAAGTCCATCATCCCCGTGGTCATGGCAGGCATCATCGCCATCTATGGCCT
GGTGGTGGCAGTCCTCATCGCCAACTCCCTGACTGAAGGCATCAGTCTCTACAAGAGTTT
CCTTCAGCTGGGCGCTGGCCTGAGTGTGGGCCTGAGCGGGCTGGCAGCCGGCTTTGCCAT
CGGCATTGTGGGCGATGCAGGCGTGCGGGGCACTGCCCAGCAGCCCCGGCTCTTCGTGGG
CATGATCCTCATCCTCATCTTCGCGGAAGTGCTCGGCCTCTACGGTCTCATCGTTGCCCT
CATCCTCTCCACAAAGTAGCCCCTCCGGGCCCACCAGACACAGAATAGGATGTAAAGACC
ACCCCTCCTCATTCCAGAACGAACAGCCTGACACACACGCACGGGGCCTCCGCCCCCCTG
TAGTTGGTCTTGTAAATGCGCAGTGTCCTAGTGCCCATCGTCTGTTGCCCCAGCCTTGCC
CCTGCCAGCCCCGTGCCGTGGACGTCCGGGCCACCACTCACCCATCCAGGCCCCCGACCA
GTGAGGATGCAGGCCTCCGGCCGCGCCCACCCCTAGAGTGCTCTGTGTATAAGGATGAAT
TAGAGGTGTCACTTTCTCTTCACTGGATGTTTATTTATAAAGTTTTGACCCGTTCATTCG
TCTGTGGAGCAGCCCTCGTCTCCCAACTATATAGTCATCCCAGGTACACTGTTGCGTCGC
GAGGTTACCATTTGCCCTGAGACTCGTGGGATGGAACCACCCTCCTGCCGCCCGGCTGCT
CGGGGCCCACCGGGCCCTGGCGCTGAACTGTGTCCAATAAAGTTCTCGGATGTGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGCTGGTATTTAGAGCGCAGCGGCTGACGGGCCGGATCCCCTTCGCAGCCGCTTCAGC
GCTCGCTTCGCGCACCTCGCAGCCTGCCGCGCCCGGCCCGGCCTCGTCCCCGCCTCGACC
TGCTGAGCTCGCCCCCTCCCCACCCGCAGACATGTCCGAGGCCAAGAGCGGCCCCGAGTA
CGCCGCCTTTTTCGCGGTCATGGGCGCCTCGGCCGCCATGGTCTTCAGCGCCCTGGGTGC
CGCCTATGGGACGGCCAAGAGCGGCACTGGCATCGCAGCCATGTCTGTCATGCGGCCAGA
GCTGATCATGAAGTCCATCATCCCCGTGGTCATGGCAGGCATCATCGCCATCTATGGCCT
GGTGGTGGCAGTCCTCATCGCCAACTCCCTGACTGAAGGCATCAGTCTCTACAAGAGTTT
CCTTCAGCTGGGCGCTGGCCTGAGTGTGGGCCTGAGCGGGCTGGCAGCCGGCTTTGCCAT
CGGCATTGTGGGCGATGCAGGCGTGCGGGGCACTGCCCAGCAGCCCCGGCTCTTCGTGGG
CATGATCCTCATCCTCATCTTCGCGGAAGTGCTCGGCCTCTACGGTCTCATCGTTGCCCT
CATCCTCTCCACAAAGTAGCCCCTCCGGGCCCACCAGACACAGAATAGGATGTAAAGACC
ACCCCTCCTCATTCCAGAACGAACAGCCTGACACACACGCACGGGGCCTCCGCCCCCCTG
TAGTTGGTCTTGTAAATGCGCAGTGTCCTAGTGCCCATCGTCTGTTGCCCCAGCCTTGCC
CCTGCCAGCCCCGTGCCGTGGACGTCCGGGCCACCACTCACCCATCCAGGCCCCCGACCA
GTGAGGATGCAGGCCTCCGGCCGCGCCCACCCCTAGAGTGCTCTGTGTATAAGGATGAAT
TAGAGGTGTCACTTTCTCTTCACTGGATGTTTATTTATAAAGTTTTGACCCGTTCATTCG
TCTGTGGAGCAGCCCTCGTCTCCCAACTATATAGTCATCCCAGGTACACTGTTGCGTCGC
GAGGTTACCATTTGCCCTGAGACTCGTGGGATGGAACCACCCTCCTGCCGCCCGGCTGCT
CGGGGCCCACCGGGCCCTGGCGCTGAACTGTGTCCAATAAAGTTCTCGGATGTGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               VATL_SHEEP

Coded protein: 1 entry(ies)

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Protein identifier


               
               VATL_SHEEP

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               199-398, + strand, RNAz p=0.518773

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-398, + strand, RNAz p=0.518773

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               42-1150, gnl|bosTau2|chr8 (10804003-10802861)
               

               
               42-1150, gnl|Hg17|chr6 (42802852-42803922)
               

               
               42-1150, gnl|Mm7|chr6 (37736810-37737938)
               


               
               412-1135, gnl|bosTau2|chr25 (1562637-1561888)
               

               
               412-1135, gnl|Hg17|chr16 (2509540-2510220)
               

               
               412-1135, gnl|Mm7|chr17 (22345444-22344698)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-1150, gnl|bosTau2|chr8 (10804003-10802861)
               

               
               42-1150, gnl|Hg17|chr6 (42802852-42803922)
               

               
               42-1150, gnl|Mm7|chr6 (37736810-37737938)
               


               
               412-1135, gnl|bosTau2|chr25 (1562637-1561888)
               

               
               412-1135, gnl|Hg17|chr16 (2509540-2510220)
               

               
               412-1135, gnl|Mm7|chr17 (22345444-22344698)

Expressed library(ies): 46 entry(ies)

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Expressed library(ies): 46 entry(ies)

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               ece (1.83444)
               

               
               fhi (1.69578)
               

               
               fce (1.35796)
               

               
               ute (1.19506)
               

               
               fcc (1.18671)
               

               
               hyp (0.999857)
               

               
               cov (0.925069)
               

               
               cli (0.91687)
               

               
               cly (0.844493)
               

               
               amn (0.835422)
               

               
               elu (0.770713)
               

               
               nbm (0.695272)
               

               
               nca (0.684369)
               

               
               nmm (0.664011)
               

               
               cag (0.604778)
               

               
               eje (0.593003)
               

               
               ecc (0.575175)
               

               
               jca (0.569801)
               

               
               nje (0.49776)
               

               
               nco (0.485201)
               

               
               ebs (0.473205)
               

               
               lnt (0.426925)
               

               
               col (0.390016)
               

               
               nep (0.36785)
               

               
               fty (0.351679)
               

               
               ton (0.351)
               

               
               eye (0.341006)
               

               
               csp (0.322373)
               

               
               jej (0.296765)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               cty (0.10408)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (1.83444)
               

               
               fhi (1.69578)
               

               
               fce (1.35796)
               

               
               ute (1.19506)
               

               
               fcc (1.18671)
               

               
               hyp (0.999857)
               

               
               cov (0.925069)
               

               
               cli (0.91687)
               

               
               cly (0.844493)
               

               
               amn (0.835422)
               

               
               elu (0.770713)
               

               
               nbm (0.695272)
               

               
               nca (0.684369)
               

               
               nmm (0.664011)
               

               
               cag (0.604778)
               

               
               eje (0.593003)
               

               
               ecc (0.575175)
               

               
               jca (0.569801)
               

               
               nje (0.49776)
               

               
               nco (0.485201)
               

               
               ebs (0.473205)
               

               
               lnt (0.426925)
               

               
               col (0.390016)
               

               
               nep (0.36785)
               

               
               fty (0.351679)
               

               
               ton (0.351)
               

               
               eye (0.341006)
               

               
               csp (0.322373)
               

               
               jej (0.296765)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               cty (0.10408)

	42-1150, gnl\|bosTau2\|chr8 (10804003-10802861)
	42-1150, gnl\|Hg17\|chr6 (42802852-42803922)
	42-1150, gnl\|Mm7\|chr6 (37736810-37737938)

	412-1135, gnl\|bosTau2\|chr25 (1562637-1561888)
	412-1135, gnl\|Hg17\|chr16 (2509540-2510220)
	412-1135, gnl\|Mm7\|chr17 (22345444-22344698)

	ece (1.83444)
	fhi (1.69578)
	fce (1.35796)
	ute (1.19506)
	fcc (1.18671)
	hyp (0.999857)
	cov (0.925069)
	cli (0.91687)
	cly (0.844493)
	amn (0.835422)
	elu (0.770713)
	nbm (0.695272)
	nca (0.684369)
	nmm (0.664011)
	cag (0.604778)
	eje (0.593003)
	ecc (0.575175)
	jca (0.569801)
	nje (0.49776)
	nco (0.485201)
	ebs (0.473205)
	lnt (0.426925)
	col (0.390016)
	nep (0.36785)
	fty (0.351679)
	ton (0.351)
	eye (0.341006)
	csp (0.322373)
	jej (0.296765)
	ese (0.253004)
	eep (0.245128)
	eru (0.240096)
	clu (0.239292)
	pgl (0.236967)
	nlu (0.191681)
	ill (0.175593)
	fbs (0.175346)
	mcp (0.170648)
	cki (0.165235)
	pty (0.142714)
	hlv (0.139256)
	che (0.136314)
	pla (0.133672)
	cbr (0.127975)
	sug (0.127291)
	cty (0.10408)