Ss1.1-Tes1-TES01C060016.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTTCTACTCACGTTGCCGCCTTCCCAGCGTTTTCGCCGGTATGAAGCCGATCCTGCTG CAGGGCCATGAGCGGTCCATTACGCAGATTAAGTACAACCGCGAGGGAGACCTCCTCTTC ACGGTGGCCAAGGACCCTATTGTCAATGTATGGTACTCTGTGAATGGTGAGAGGCTGGGC ACCTACATGGGCCACACCGGTGCTGTGTGGTGTGTGGACGCTGACTGGGACACCAAGCAT GTCCTCACCGGCTCAGCTGACAACAGCTGTCGTCTCTGGGACTGTGAAACAGGGAAACAG TTGGCCCTCCTCAAGACCAACTCAGCAGTCCGGACCTGTGGCTTTGACTTTGGGGGCAAC ATCATCATGTTCTCCACGGACAAGCAGATGGGCTACCAGTGCTTCGTGAGCTTCTTTGAT CTCCGGGACCCGAGCCAGATTGACAGCAACGAGCCTTACATGAAGATCCCCTGCAATGAC TCCAAGATCACCAGTGCTGTTTGGGGACCCTTGGGAGAGTGCATCATTGCGGGCCATGAG GGTGGAGAGCTCAACCAGTATAGCGCCAAGTCTGGAGAGGTGTTGGTGAATGTTAAGGAG CACTCGCGGCAGATCAATGACATCCAGTTATCCCGGGACATGACCATGTTTGTCACTGCA TCCAAGGACAACACAGCCAAGCTCTTTGACTCCACAACCCTGGAACACCAGAAGACTTTC CGCACAGAACGTCCCGTCAACTCGGCTGCCCTCTCTCCCAACTATGACCACGTGGTGCTG GGCGGTGGTCAGGAAGCCATGGATGTAACCACTACCTCCACCAGGATTGGCAAGTTCGAG GCCAGGTTCTTCCACTTGGCCTTTGAAGAAGAATTCGGAAGAGTCAAGGGTCACTTCGGA CCTATCAACAGCGTTGCCTTCCATCCTGATGGCAAAAGCTACAGCAGCGGTGGGGAAGAC GGTTATGTCCGCATCCACTACTTCGACCCGCAGTACTTTGAATTTGAGTTTGAGGCTTAA GAAGCTGGATCTCCGTCTGGGGTAGGGTCACAGAAGGTTTTGGACTCTGAGAAATAAATT AGTTTGGAAATAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTTCTACTCACGTTGCCGCCTTCCCAGCGTTTTCGCCGGTATGAAGCCGATCCTGCTG CAGGGCCATGAGCGGTCCATTACGCAGATTAAGTACAACCGCGAGGGAGACCTCCTCTTC ACGGTGGCCAAGGACCCTATTGTCAATGTATGGTACTCTGTGAATGGTGAGAGGCTGGGC ACCTACATGGGCCACACCGGTGCTGTGTGGTGTGTGGACGCTGACTGGGACACCAAGCAT GTCCTCACCGGCTCAGCTGACAACAGCTGTCGTCTCTGGGACTGTGAAACAGGGAAACAG TTGGCCCTCCTCAAGACCAACTCAGCAGTCCGGACCTGTGGCTTTGACTTTGGGGGCAAC ATCATCATGTTCTCCACGGACAAGCAGATGGGCTACCAGTGCTTCGTGAGCTTCTTTGAT CTCCGGGACCCGAGCCAGATTGACAGCAACGAGCCTTACATGAAGATCCCCTGCAATGAC TCCAAGATCACCAGTGCTGTTTGGGGACCCTTGGGAGAGTGCATCATTGCGGGCCATGAG GGTGGAGAGCTCAACCAGTATAGCGCCAAGTCTGGAGAGGTGTTGGTGAATGTTAAGGAG CACTCGCGGCAGATCAATGACATCCAGTTATCCCGGGACATGACCATGTTTGTCACTGCA TCCAAGGACAACACAGCCAAGCTCTTTGACTCCACAACCCTGGAACACCAGAAGACTTTC CGCACAGAACGTCCCGTCAACTCGGCTGCCCTCTCTCCCAACTATGACCACGTGGTGCTG GGCGGTGGTCAGGAAGCCATGGATGTAACCACTACCTCCACCAGGATTGGCAAGTTCGAG GCCAGGTTCTTCCACTTGGCCTTTGAAGAAGAATTCGGAAGAGTCAAGGGTCACTTCGGA CCTATCAACAGCGTTGCCTTCCATCCTGATGGCAAAAGCTACAGCAGCGGTGGGGAAGAC GGTTATGTCCGCATCCACTACTTCGACCCGCAGTACTTTGAATTTGAGTTTGAGGCTTAA GAAGCTGGATCTCCGTCTGGGGTAGGGTCACAGAAGGTTTTGGACTCTGAGAAATAAATT AGTTTGGAAATAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 290-440, gnl|bosTau2|chr2 (73516042-73516192) | |
| 290-440, gnl|canFam2|chr1 (81697505-81697659) | |
| 290-440, gnl|canFam2|chr2 (71875077-71874914) | |
| 290-440, gnl|danRer3|chr19 (62507649-62507487) | |
| 290-440, gnl|danRer3|chr19 (62507494-62507648) | |
| 290-440, gnl|dasNov1|scaffold_3539 (88912-89061) | |
| 290-440, gnl|dasNov1|scaffold_3539 (89065-88912) | |
| 290-440, gnl|echTel1|scaffold_274817 (10526-10680) | |
| 290-440, gnl|echTel1|scaffold_321073 (7057-7226) | |
| 290-440, gnl|fr1|chrUn (349047-349218) | |
| 290-440, gnl|fr1|chrUn (349209-349055) | |
| 290-440, gnl|galGal2|chr23 (4592010-4591847) | |
| 290-440, gnl|galGal2|chr23 (4591848-4592002) | |
| 290-440, gnl|hg17|chr1 (32360856-32361026) | |
| 290-440, gnl|Hg17|chr1 (32360862-32361012) | |
| 290-440, gnl|hg17|chr7 (109193797-109193951) | |
| 290-440, gnl|loxAfr1|scaffold_35320 (4893-5047) | |
| 290-440, gnl|loxAfr1|scaffold_4669 (7797-7628) | |
| 290-440, gnl|mm7|chr10 (124017054-124016899) | |
| 290-440, gnl|mm7|chr4 (129040069-129039908) | |
| 290-440, gnl|Mm7|chr4 (129040063-129039913) | |
| 290-440, gnl|monDom2|scaffold_3 (6548757-6548911) | |
| 290-440, gnl|monDom2|scaffold_43 (7556986-7556823) | |
| 290-440, gnl|panTro1|chr1 (33120218-33120381) | |
| 290-440, gnl|panTro1|chr6 (111122745-111122899) | |
| 290-440, gnl|rheMac2|chr1 (34984025-34984188) | |
| 290-440, gnl|rheMac2|chr3 (147362636-147362790) | |
| 290-440, gnl|rn3|chr2 (145684838-145684989) | |
| 290-440, gnl|rn3|chr2 (145684993-145684839) | |
| 290-440, gnl|tetNig1|chr21 (4910763-4910604) | |
| 290-440, gnl|tetNig1|chr21 (4910608-4910762) | |
| 290-440, gnl|xenTro1|scaffold_523 (680354-680517) | |
| 290-440, gnl|xenTro1|scaffold_523 (680516-680362) | |
| 569-681, gnl|bosTau2|chr2 (73519116-73519228) | |
| 569-681, gnl|canFam2|chr1 (81697269-81697354) | |
| 569-681, gnl|canFam2|chr2 (71871451-71871341) | |
| 569-681, gnl|danRer3|chr19 (62505899-62505789) | |
| 569-681, gnl|danRer3|chr19 (62507193-62507256) | |
| 569-681, gnl|dasNov1|scaffold_3246 (8391-8281) | |
| 569-681, gnl|dasNov1|scaffold_3539 (89299-89214) | |
| 569-681, gnl|echTel1|scaffold_274817 (10412-10302) | |
| 569-681, gnl|echTel1|scaffold_274817 (10300-10385) | |
| 569-681, gnl|fr1|chrUn (349531-349641) | |
| 569-681, gnl|fr1|chrUn (349643-349558) | |
| 569-681, gnl|galGal2|chr23 (4591339-4591229) | |
| 569-681, gnl|galGal2|chr23 (4591227-4591312) | |
| 569-681, gnl|hg17|chr1 (32363192-32363302) | |
| 569-681, gnl|Hg17|chr1 (32363191-32363303) | |
| 569-681, gnl|hg17|chr7 (109193561-109193646) | |
| 569-681, gnl|loxAfr1|scaffold_35320 (4653-4738) | |
| 569-681, gnl|loxAfr1|scaffold_4669 (4787-4677) | |
| 569-681, gnl|mm7|chr10 (124017285-124017200) | |
| 569-681, gnl|mm7|chr4 (129038286-129038176) | |
| 569-681, gnl|Mm7|chr4 (129038285-129038173) | |
| 569-681, gnl|monDom2|scaffold_3 (6548518-6548603) | |
| 569-681, gnl|monDom2|scaffold_43 (7556386-7556276) | |
| 569-681, gnl|oryCun1|scaffold_192312 (7356-7246) | |
| 569-681, gnl|oryCun1|scaffold_192312 (7244-7329) | |
| 569-681, gnl|panTro1|chr1 (33122552-33122662) | |
| 569-681, gnl|panTro1|chr6 (111122509-111122594) | |
| 569-681, gnl|rheMac2|chr1 (34986420-34986530) | |
| 569-681, gnl|rheMac2|chr3 (147362411-147362496) | |
| 569-681, gnl|rn3|chr2 (145685117-145685227) | |
| 569-681, gnl|rn3|chr2 (145685229-145685144) | |
| 569-681, gnl|tetNig1|chr21 (4910293-4910183) | |
| 569-681, gnl|tetNig1|chr21 (4910181-4910266) | |
| 569-681, gnl|xenTro1|scaffold_523 (683393-683503) | |
| 569-681, gnl|xenTro1|scaffold_523 (683504-683420) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 290-440, gnl|bosTau2|chr2 (73516042-73516192) | |
| 290-440, gnl|canFam2|chr1 (81697505-81697659) | |
| 290-440, gnl|canFam2|chr2 (71875077-71874914) | |
| 290-440, gnl|danRer3|chr19 (62507649-62507487) | |
| 290-440, gnl|danRer3|chr19 (62507494-62507648) | |
| 290-440, gnl|dasNov1|scaffold_3539 (88912-89061) | |
| 290-440, gnl|dasNov1|scaffold_3539 (89065-88912) | |
| 290-440, gnl|echTel1|scaffold_274817 (10526-10680) | |
| 290-440, gnl|echTel1|scaffold_321073 (7057-7226) | |
| 290-440, gnl|fr1|chrUn (349047-349218) | |
| 290-440, gnl|fr1|chrUn (349209-349055) | |
| 290-440, gnl|galGal2|chr23 (4592010-4591847) | |
| 290-440, gnl|galGal2|chr23 (4591848-4592002) | |
| 290-440, gnl|hg17|chr1 (32360856-32361026) | |
| 290-440, gnl|Hg17|chr1 (32360862-32361012) | |
| 290-440, gnl|hg17|chr7 (109193797-109193951) | |
| 290-440, gnl|loxAfr1|scaffold_35320 (4893-5047) | |
| 290-440, gnl|loxAfr1|scaffold_4669 (7797-7628) | |
| 290-440, gnl|mm7|chr10 (124017054-124016899) | |
| 290-440, gnl|mm7|chr4 (129040069-129039908) | |
| 290-440, gnl|Mm7|chr4 (129040063-129039913) | |
| 290-440, gnl|monDom2|scaffold_3 (6548757-6548911) | |
| 290-440, gnl|monDom2|scaffold_43 (7556986-7556823) | |
| 290-440, gnl|panTro1|chr1 (33120218-33120381) | |
| 290-440, gnl|panTro1|chr6 (111122745-111122899) | |
| 290-440, gnl|rheMac2|chr1 (34984025-34984188) | |
| 290-440, gnl|rheMac2|chr3 (147362636-147362790) | |
| 290-440, gnl|rn3|chr2 (145684838-145684989) | |
| 290-440, gnl|rn3|chr2 (145684993-145684839) | |
| 290-440, gnl|tetNig1|chr21 (4910763-4910604) | |
| 290-440, gnl|tetNig1|chr21 (4910608-4910762) | |
| 290-440, gnl|xenTro1|scaffold_523 (680354-680517) | |
| 290-440, gnl|xenTro1|scaffold_523 (680516-680362) | |
| 569-681, gnl|bosTau2|chr2 (73519116-73519228) | |
| 569-681, gnl|canFam2|chr1 (81697269-81697354) | |
| 569-681, gnl|canFam2|chr2 (71871451-71871341) | |
| 569-681, gnl|danRer3|chr19 (62505899-62505789) | |
| 569-681, gnl|danRer3|chr19 (62507193-62507256) | |
| 569-681, gnl|dasNov1|scaffold_3246 (8391-8281) | |
| 569-681, gnl|dasNov1|scaffold_3539 (89299-89214) | |
| 569-681, gnl|echTel1|scaffold_274817 (10412-10302) | |
| 569-681, gnl|echTel1|scaffold_274817 (10300-10385) | |
| 569-681, gnl|fr1|chrUn (349531-349641) | |
| 569-681, gnl|fr1|chrUn (349643-349558) | |
| 569-681, gnl|galGal2|chr23 (4591339-4591229) | |
| 569-681, gnl|galGal2|chr23 (4591227-4591312) | |
| 569-681, gnl|hg17|chr1 (32363192-32363302) | |
| 569-681, gnl|Hg17|chr1 (32363191-32363303) | |
| 569-681, gnl|hg17|chr7 (109193561-109193646) | |
| 569-681, gnl|loxAfr1|scaffold_35320 (4653-4738) | |
| 569-681, gnl|loxAfr1|scaffold_4669 (4787-4677) | |
| 569-681, gnl|mm7|chr10 (124017285-124017200) | |
| 569-681, gnl|mm7|chr4 (129038286-129038176) | |
| 569-681, gnl|Mm7|chr4 (129038285-129038173) | |
| 569-681, gnl|monDom2|scaffold_3 (6548518-6548603) | |
| 569-681, gnl|monDom2|scaffold_43 (7556386-7556276) | |
| 569-681, gnl|oryCun1|scaffold_192312 (7356-7246) | |
| 569-681, gnl|oryCun1|scaffold_192312 (7244-7329) | |
| 569-681, gnl|panTro1|chr1 (33122552-33122662) | |
| 569-681, gnl|panTro1|chr6 (111122509-111122594) | |
| 569-681, gnl|rheMac2|chr1 (34986420-34986530) | |
| 569-681, gnl|rheMac2|chr3 (147362411-147362496) | |
| 569-681, gnl|rn3|chr2 (145685117-145685227) | |
| 569-681, gnl|rn3|chr2 (145685229-145685144) | |
| 569-681, gnl|tetNig1|chr21 (4910293-4910183) | |
| 569-681, gnl|tetNig1|chr21 (4910181-4910266) | |
| 569-681, gnl|xenTro1|scaffold_523 (683393-683503) | |
| 569-681, gnl|xenTro1|scaffold_523 (683504-683420) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| cje (0.826173) | |
| ste (0.811249) | |
| eje (0.593003) | |
| pty (0.428143) | |
| ssp (0.406559) | |
| pgl (0.35545) | |
| fty (0.351679) | |
| cut (0.339847) | |
| tbr (0.308356) | |
| spl (0.286369) | |
| che (0.272628) | |
| ese (0.253004) | |
| cly (0.241284) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| jca (0.22792) | |
| nms (0.213858) | |
| tes (0.207814) | |
| hea (0.204499) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| nbm (0.0993246) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.826173) | |
| ste (0.811249) | |
| eje (0.593003) | |
| pty (0.428143) | |
| ssp (0.406559) | |
| pgl (0.35545) | |
| fty (0.351679) | |
| cut (0.339847) | |
| tbr (0.308356) | |
| spl (0.286369) | |
| che (0.272628) | |
| ese (0.253004) | |
| cly (0.241284) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| jca (0.22792) | |
| nms (0.213858) | |
| tes (0.207814) | |
| hea (0.204499) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| nbm (0.0993246) |