Non-Coding RNA Search

Ss1.1-Tes1-TES01C070038.5

Sequence:


               
               GACTGCAGAGGCCGCGCTGCCTCCCCCGCCCGAGGTCTGCGCGCTCCGCCGCAGGGTGCA
GATCGGTGGCGCCCGCCTGGGTTTGGGGCGCAAGAGCAGAGGCGGAGCCAAGGCGGAGCC
AGCGCGCCCCGTCCCCCCTTTCCCTATCGAAAGCGAAACGGAGGGCCGGAAAGGAAGGGC
GGAGCCCGCCTGGAGGCCCCGCCCCCTGCCCTGCGCGGCGGCAGGACCGACGGGCGCGCC
CAGGTAGGGGGTCGCTGAGCGCGCAGTGCGGACCCTCGCTGGGACCTGCGCCGCCACCAT
GTCTCAGGAAGGTGTGGAGCTGGAGAAGAGCGTCCGGCGCCTCCGGGAGAAGTTTCATGG
GAAGGTATCCCCCAAGAAGGCGGGGACTCTGATGAGGAAATTTGGCAGCGACCACACCGG
AGTGGGGCGCTCCATCGTGTACGGGGTAAAGCAGAAAGATGGACAGGAACTGAGTAATGA
CCTGGATGCCCAGGACCCCCCAGAGGATATGAAGCAGGACCGTGACATCCAGGCAGTGGC
AACCTCCCTCCTGCCATTGACAGAAGCCAACCTACGCATGTTCCAGCGTGCCCAGGAAGA
CCTCATCCCTGCCGTGGACCGGCAGTTCGCTTGCTCTTCCTGTGACCACGTCTGGTGGCG
CCGCGTGCCCCAGCGGAAGGAGGTGTCCAGATGCAGGAAATGCAGGAAGCGCTACGAGCC
AGTGCCACCCGACAAGATGTGGGGCGTGGCTGAGTTCCACTGCCCGAAATGTCGGCACAA
CTTCCGGGGCTGGGCGCAAATGGGGTCCACATCCCCCTGCTATGGGTGCGGCTTCCCCGT
GTTTCCAACACGGATCCTCCCTCCGCGCTGGGACTGGGACACGGATCGCCGCAGCAACCA
CACCCACTCCTGCTCAGCTGAGGACTGCTACAACCGGCGAGAGCCCCACGTGCCTGGGAC
CTCCTGTGCGCACCCCAAGAGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTGCAGAGGCCGCGCTGCCTCCCCCGCCCGAGGTCTGCGCGCTCCGCCGCAGGGTGCA
GATCGGTGGCGCCCGCCTGGGTTTGGGGCGCAAGAGCAGAGGCGGAGCCAAGGCGGAGCC
AGCGCGCCCCGTCCCCCCTTTCCCTATCGAAAGCGAAACGGAGGGCCGGAAAGGAAGGGC
GGAGCCCGCCTGGAGGCCCCGCCCCCTGCCCTGCGCGGCGGCAGGACCGACGGGCGCGCC
CAGGTAGGGGGTCGCTGAGCGCGCAGTGCGGACCCTCGCTGGGACCTGCGCCGCCACCAT
GTCTCAGGAAGGTGTGGAGCTGGAGAAGAGCGTCCGGCGCCTCCGGGAGAAGTTTCATGG
GAAGGTATCCCCCAAGAAGGCGGGGACTCTGATGAGGAAATTTGGCAGCGACCACACCGG
AGTGGGGCGCTCCATCGTGTACGGGGTAAAGCAGAAAGATGGACAGGAACTGAGTAATGA
CCTGGATGCCCAGGACCCCCCAGAGGATATGAAGCAGGACCGTGACATCCAGGCAGTGGC
AACCTCCCTCCTGCCATTGACAGAAGCCAACCTACGCATGTTCCAGCGTGCCCAGGAAGA
CCTCATCCCTGCCGTGGACCGGCAGTTCGCTTGCTCTTCCTGTGACCACGTCTGGTGGCG
CCGCGTGCCCCAGCGGAAGGAGGTGTCCAGATGCAGGAAATGCAGGAAGCGCTACGAGCC
AGTGCCACCCGACAAGATGTGGGGCGTGGCTGAGTTCCACTGCCCGAAATGTCGGCACAA
CTTCCGGGGCTGGGCGCAAATGGGGTCCACATCCCCCTGCTATGGGTGCGGCTTCCCCGT
GTTTCCAACACGGATCCTCCCTCCGCGCTGGGACTGGGACACGGATCGCCGCAGCAACCA
CACCCACTCCTGCTCAGCTGAGGACTGCTACAACCGGCGAGAGCCCCACGTGCCTGGGAC
CTCCTGTGCGCACCCCAAGAGCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55778369|gb|AAH86569.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55778369|gb|AAH86569.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-326, gnl|bosTau2|chr7 (9694665-9694338)
               

               
               1-326, gnl|Hg17|chr19 (10057806-10058132)
               

               
               1-326, gnl|Mm7|chr9 (20745222-20745498)
               


               
               530-685, gnl|bosTau2|chr7 (9691970-9691815)
               

               
               530-685, gnl|Hg17|chr19 (10061571-10061726)
               

               
               530-685, gnl|Mm7|chr9 (20747929-20748084)
               


               
               786-941, gnl|bosTau2|chr7 (9691121-9690966)
               

               
               786-941, gnl|Hg17|chr19 (10063151-10063306)
               

               
               786-941, gnl|Mm7|chr9 (20749665-20749820)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-326, gnl|bosTau2|chr7 (9694665-9694338)
               

               
               1-326, gnl|Hg17|chr19 (10057806-10058132)
               

               
               1-326, gnl|Mm7|chr9 (20745222-20745498)
               


               
               530-685, gnl|bosTau2|chr7 (9691970-9691815)
               

               
               530-685, gnl|Hg17|chr19 (10061571-10061726)
               

               
               530-685, gnl|Mm7|chr9 (20747929-20748084)
               


               
               786-941, gnl|bosTau2|chr7 (9691121-9690966)
               

               
               786-941, gnl|Hg17|chr19 (10063151-10063306)
               

               
               786-941, gnl|Mm7|chr9 (20749665-20749820)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               pgl (0.118483)

	1-326, gnl\|bosTau2\|chr7 (9694665-9694338)
	1-326, gnl\|Hg17\|chr19 (10057806-10058132)
	1-326, gnl\|Mm7\|chr9 (20745222-20745498)

	530-685, gnl\|bosTau2\|chr7 (9691970-9691815)
	530-685, gnl\|Hg17\|chr19 (10061571-10061726)
	530-685, gnl\|Mm7\|chr9 (20747929-20748084)

	786-941, gnl\|bosTau2\|chr7 (9691121-9690966)
	786-941, gnl\|Hg17\|chr19 (10063151-10063306)
	786-941, gnl\|Mm7\|chr9 (20749665-20749820)