Ss1.1-Tes1-TES01C090004.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTCAGTGTGTTGGCTCCAGCGCCATGGCGCCCGCTAGGAAGTTCTTCGTGGGGGGAAA CTGGAAGATGAACGGGCGAAAGAACAATCTGGGGGAGCTCATCAACACCCTCAACGCAGC CAAGCTGCCGGCCGACACCGAGGTGGTTTGCGCACCCCCCACCGCCTACATTGACTTCGC CAGGCAGAAGCTAGATCCCAAGATTGCCGTGGCTGCACAGAACTGCTACAAAGTGGCTAA TGGGGCCTTTACTGGGGAGATCAGCCCTGGCATGATCAAAGACCTCGGAGCCACGTGGGT AGTCCTGGGGCACTCGGAGAGAAGGCATGTCTTTGGAGAGTCAGATGAGCTGATTGGGCA GAAAGTGGCCCATGCCCTGGCAGAGGGACTTGGAGTAATCGCCTGCATTGGGGAGAAGCT AGATGAGCGGGAAGCTGGCATCACCGAGAAGGTCGTTTTCGAGCAAACCAAGGTCATCGC AGATAATGTGAAGGACTGGAACAAGGTTGTCCTGGCCTATGAGCCTGTGTGGGCCATTGG TACCGGCAAGACTGCCACACCCCAACAGGCCCAGGAAGTACATGAAAAGCTCCGGGGATG GCTTAAGACCCACGTCTCTGAGGCAGTGGCTCAGAGCACCCGCATCATTTATGGGGGCTC TGTGACTGGGGCAACCTGCAAAGAGCTGGCGAGCCAGCCTGATGTGGACGGGTTCCTTGT GGGTGGCGCTTCCCTCAAGCCTGAATTTGTGGACATCATCAATGCCAAATAATAAGCCCA TCCATCGCCCCTACCTCCCCTTCCCTCCAAGCCAGGGACTAGGGAGCTCAGAAGCCCAAT AACTGTGCTGCCCCACCCCCCACATGCTTCTGATGGTGTCGCCTGCCCCCTCTCGCAGCC TAATCCGAGGTGGACCTCTTCCTTTCCCGTTTACACCCTACCCTGTAATGGCTGGGACCA GGCCAATCCTGCCACCACTTACTGTTCAGTTGGAACTAAACCTGTCACCAAGGAGGCGTC TCCTTGGCTGAGAGGTGGGAGGGGTGGTTTGCCCGTGGGTCCCCTCCGTCCCCGGTGAAG GCAAAAGAGAAAAACCATCCTGTCCCATCTCACAGCACGAGGCCAAGGACCGAGAAAAGG CCCTGTCCTCTGCTGGGGCCGGGGTGCTGCTCCCTCCCACGGTGCCAATGCCTGTGTGTG TTGTGTCTGTGAGAAGTCCCGTGGGGGGGGGAATAAACACCTGGCACTGAAAAAAAAAAA TTGTCCTTCACTGACCTAGCCTAAATCCTTTTTTTTTCCTCTCTGAGGCAGTCGCAAGAC CCTTGTGCAACAATAAAAAAAATTACCATGAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTCAGTGTGTTGGCTCCAGCGCCATGGCGCCCGCTAGGAAGTTCTTCGTGGGGGGAAA CTGGAAGATGAACGGGCGAAAGAACAATCTGGGGGAGCTCATCAACACCCTCAACGCAGC CAAGCTGCCGGCCGACACCGAGGTGGTTTGCGCACCCCCCACCGCCTACATTGACTTCGC CAGGCAGAAGCTAGATCCCAAGATTGCCGTGGCTGCACAGAACTGCTACAAAGTGGCTAA TGGGGCCTTTACTGGGGAGATCAGCCCTGGCATGATCAAAGACCTCGGAGCCACGTGGGT AGTCCTGGGGCACTCGGAGAGAAGGCATGTCTTTGGAGAGTCAGATGAGCTGATTGGGCA GAAAGTGGCCCATGCCCTGGCAGAGGGACTTGGAGTAATCGCCTGCATTGGGGAGAAGCT AGATGAGCGGGAAGCTGGCATCACCGAGAAGGTCGTTTTCGAGCAAACCAAGGTCATCGC AGATAATGTGAAGGACTGGAACAAGGTTGTCCTGGCCTATGAGCCTGTGTGGGCCATTGG TACCGGCAAGACTGCCACACCCCAACAGGCCCAGGAAGTACATGAAAAGCTCCGGGGATG GCTTAAGACCCACGTCTCTGAGGCAGTGGCTCAGAGCACCCGCATCATTTATGGGGGCTC TGTGACTGGGGCAACCTGCAAAGAGCTGGCGAGCCAGCCTGATGTGGACGGGTTCCTTGT GGGTGGCGCTTCCCTCAAGCCTGAATTTGTGGACATCATCAATGCCAAATAATAAGCCCA TCCATCGCCCCTACCTCCCCTTCCCTCCAAGCCAGGGACTAGGGAGCTCAGAAGCCCAAT AACTGTGCTGCCCCACCCCCCACATGCTTCTGATGGTGTCGCCTGCCCCCTCTCGCAGCC TAATCCGAGGTGGACCTCTTCCTTTCCCGTTTACACCCTACCCTGTAATGGCTGGGACCA GGCCAATCCTGCCACCACTTACTGTTCAGTTGGAACTAAACCTGTCACCAAGGAGGCGTC TCCTTGGCTGAGAGGTGGGAGGGGTGGTTTGCCCGTGGGTCCCCTCCGTCCCCGGTGAAG GCAAAAGAGAAAAACCATCCTGTCCCATCTCACAGCACGAGGCCAAGGACCGAGAAAAGG CCCTGTCCTCTGCTGGGGCCGGGGTGCTGCTCCCTCCCACGGTGCCAATGCCTGTGTGTG TTGTGTCTGTGAGAAGTCCCGTGGGGGGGGGAATAAACACCTGGCACTGAAAAAAAAAAA TTGTCCTTCACTGACCTAGCCTAAATCCTTTTTTTTTCCTCTCTGAGGCAGTCGCAAGAC CCTTGTGCAACAATAAAAAAAATTACCATGAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 140-264, gnl|bosTau2|chr5 (60393889-60393765) | |
| 140-264, gnl|canFam2|chr27 (41184990-41184849) | |
| 140-264, gnl|canFam2|chr27 (41184975-41184854) | |
| 140-264, gnl|canFam2|chr27 (41184851-41184974) | |
| 140-264, gnl|danRer3|chr19 (888415-888273) | |
| 140-264, gnl|danRer3|chr19 (888399-888278) | |
| 140-264, gnl|danRer3|chr19 (888275-888399) | |
| 140-264, gnl|echTel1|scaffold_138920 (447-306) | |
| 140-264, gnl|echTel1|scaffold_276702 (40793-40702) | |
| 140-264, gnl|echTel1|scaffold_28342 (1612-1739) | |
| 140-264, gnl|fr1|chrUn (74983584-74983447) | |
| 140-264, gnl|fr1|chrUn (74983573-74983452) | |
| 140-264, gnl|fr1|chrUn (74983449-74983573) | |
| 140-264, gnl|galGal2|chr1 (71363766-71363908) | |
| 140-264, gnl|hg17|chr12 (6848274-6848415) | |
| 140-264, gnl|Hg17|chr12 (6848288-6848412) | |
| 140-264, gnl|hg17|chr4 (48859866-48859993) | |
| 140-264, gnl|hg17|chr6 (116466724-116466843) | |
| 140-264, gnl|mm7|chr14 (14761301-14761174) | |
| 140-264, gnl|mm7|chr18 (20919933-20919813) | |
| 140-264, gnl|mm7|chr6 (124839311-124839180) | |
| 140-264, gnl|Mm7|chr6 (124839305-124839181) | |
| 140-264, gnl|monDom2|scaffold_31 (15346209-15346345) | |
| 140-264, gnl|monDom2|scaffold_31 (15346343-15346220) | |
| 140-264, gnl|monDom2|scaffold_5 (66004179-66004285) | |
| 140-264, gnl|panTro1|chr10 (7385152-7385293) | |
| 140-264, gnl|panTro1|chr3 (98032139-98032012) | |
| 140-264, gnl|panTro1|chr5 (118862757-118862876) | |
| 140-264, gnl|rheMac2|chr11 (7050363-7050504) | |
| 140-264, gnl|rheMac2|chr4 (147893330-147893211) | |
| 140-264, gnl|rheMac2|chr5 (44316154-44316282) | |
| 140-264, gnl|rn3|chr17 (33355623-33355502) | |
| 140-264, gnl|rn3|chr17 (33355499-33355626) | |
| 140-264, gnl|rn3|chr4 (161180570-161180439) | |
| 140-264, gnl|tetNig1|chrUn_random (90583234-90583376) | |
| 140-264, gnl|tetNig1|chrUn_random (90583250-90583371) | |
| 140-264, gnl|tetNig1|chrUn_random (90583374-90583247) | |
| 140-264, gnl|xenTro1|scaffold_3610 (5073-5198) | |
| 140-264, gnl|xenTro1|scaffold_811 (473182-473041) | |
| 348-485, gnl|bosTau2|chr5 (60393488-60393351) | |
| 348-485, gnl|canFam2|chr27 (41184442-41184532) | |
| 348-485, gnl|danRer3|chr19 (887828-887916) | |
| 348-485, gnl|dasNov1|scaffold_103109 (93-4) | |
| 348-485, gnl|echTel1|scaffold_28342 (1393-1480) | |
| 348-485, gnl|fr1|chrUn (74982973-74983068) | |
| 348-485, gnl|Hg17|chr12 (6848681-6848818) | |
| 348-485, gnl|hg17|chr4 (48859639-48859734) | |
| 348-485, gnl|mm7|chr14 (14761528-14761433) | |
| 348-485, gnl|Mm7|chr6 (124838929-124838792) | |
| 348-485, gnl|monDom2|scaffold_31 (15346740-15346645) | |
| 348-485, gnl|panTro1|chr3 (98032366-98032271) | |
| 348-485, gnl|rheMac2|chr5 (44315927-44316022) | |
| 348-485, gnl|rn3|chr17 (33355272-33355367) | |
| 348-485, gnl|tetNig1|chrUn_random (90583843-90583752) | |
| 656-1333, gnl|bosTau2|chr5 (60392392-60391721) | |
| 656-1333, gnl|Hg17|chr12 (6849689-6850338) | |
| 656-1333, gnl|Mm7|chr6 (124837779-124837035) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 140-264, gnl|bosTau2|chr5 (60393889-60393765) | |
| 140-264, gnl|canFam2|chr27 (41184990-41184849) | |
| 140-264, gnl|canFam2|chr27 (41184975-41184854) | |
| 140-264, gnl|canFam2|chr27 (41184851-41184974) | |
| 140-264, gnl|danRer3|chr19 (888415-888273) | |
| 140-264, gnl|danRer3|chr19 (888399-888278) | |
| 140-264, gnl|danRer3|chr19 (888275-888399) | |
| 140-264, gnl|echTel1|scaffold_138920 (447-306) | |
| 140-264, gnl|echTel1|scaffold_276702 (40793-40702) | |
| 140-264, gnl|echTel1|scaffold_28342 (1612-1739) | |
| 140-264, gnl|fr1|chrUn (74983584-74983447) | |
| 140-264, gnl|fr1|chrUn (74983573-74983452) | |
| 140-264, gnl|fr1|chrUn (74983449-74983573) | |
| 140-264, gnl|galGal2|chr1 (71363766-71363908) | |
| 140-264, gnl|hg17|chr12 (6848274-6848415) | |
| 140-264, gnl|Hg17|chr12 (6848288-6848412) | |
| 140-264, gnl|hg17|chr4 (48859866-48859993) | |
| 140-264, gnl|hg17|chr6 (116466724-116466843) | |
| 140-264, gnl|mm7|chr14 (14761301-14761174) | |
| 140-264, gnl|mm7|chr18 (20919933-20919813) | |
| 140-264, gnl|mm7|chr6 (124839311-124839180) | |
| 140-264, gnl|Mm7|chr6 (124839305-124839181) | |
| 140-264, gnl|monDom2|scaffold_31 (15346209-15346345) | |
| 140-264, gnl|monDom2|scaffold_31 (15346343-15346220) | |
| 140-264, gnl|monDom2|scaffold_5 (66004179-66004285) | |
| 140-264, gnl|panTro1|chr10 (7385152-7385293) | |
| 140-264, gnl|panTro1|chr3 (98032139-98032012) | |
| 140-264, gnl|panTro1|chr5 (118862757-118862876) | |
| 140-264, gnl|rheMac2|chr11 (7050363-7050504) | |
| 140-264, gnl|rheMac2|chr4 (147893330-147893211) | |
| 140-264, gnl|rheMac2|chr5 (44316154-44316282) | |
| 140-264, gnl|rn3|chr17 (33355623-33355502) | |
| 140-264, gnl|rn3|chr17 (33355499-33355626) | |
| 140-264, gnl|rn3|chr4 (161180570-161180439) | |
| 140-264, gnl|tetNig1|chrUn_random (90583234-90583376) | |
| 140-264, gnl|tetNig1|chrUn_random (90583250-90583371) | |
| 140-264, gnl|tetNig1|chrUn_random (90583374-90583247) | |
| 140-264, gnl|xenTro1|scaffold_3610 (5073-5198) | |
| 140-264, gnl|xenTro1|scaffold_811 (473182-473041) | |
| 348-485, gnl|bosTau2|chr5 (60393488-60393351) | |
| 348-485, gnl|canFam2|chr27 (41184442-41184532) | |
| 348-485, gnl|danRer3|chr19 (887828-887916) | |
| 348-485, gnl|dasNov1|scaffold_103109 (93-4) | |
| 348-485, gnl|echTel1|scaffold_28342 (1393-1480) | |
| 348-485, gnl|fr1|chrUn (74982973-74983068) | |
| 348-485, gnl|Hg17|chr12 (6848681-6848818) | |
| 348-485, gnl|hg17|chr4 (48859639-48859734) | |
| 348-485, gnl|mm7|chr14 (14761528-14761433) | |
| 348-485, gnl|Mm7|chr6 (124838929-124838792) | |
| 348-485, gnl|monDom2|scaffold_31 (15346740-15346645) | |
| 348-485, gnl|panTro1|chr3 (98032366-98032271) | |
| 348-485, gnl|rheMac2|chr5 (44315927-44316022) | |
| 348-485, gnl|rn3|chr17 (33355272-33355367) | |
| 348-485, gnl|tetNig1|chrUn_random (90583843-90583752) | |
| 656-1333, gnl|bosTau2|chr5 (60392392-60391721) | |
| 656-1333, gnl|Hg17|chr12 (6849689-6850338) | |
| 656-1333, gnl|Mm7|chr6 (124837779-124837035) |
| Expressed library(ies): 43 entry(ies) | More info |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
| mas (1.89274) | |
| fhi (1.35662) | |
| nms (1.28315) | |
| nco (0.808669) | |
| nep (0.7357) | |
| ton (0.702001) | |
| ece (0.687916) | |
| nca (0.684369) | |
| eye (0.682012) | |
| cag (0.604778) | |
| cly (0.603209) | |
| hlv (0.557025) | |
| ese (0.506009) | |
| eru (0.480192) | |
| hyp (0.42851) | |
| lnt (0.426925) | |
| amn (0.417711) | |
| cov (0.396458) | |
| eje (0.395335) | |
| nlu (0.383362) | |
| ill (0.351185) | |
| fbs (0.350693) | |
| duo (0.345602) | |
| jca (0.34188) | |
| csp (0.322373) | |
| pty (0.285429) | |
| pla (0.267344) | |
| ute (0.265569) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| med (0.232504) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| col (0.195008) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (1.89274) | |
| fhi (1.35662) | |
| nms (1.28315) | |
| nco (0.808669) | |
| nep (0.7357) | |
| ton (0.702001) | |
| ece (0.687916) | |
| nca (0.684369) | |
| eye (0.682012) | |
| cag (0.604778) | |
| cly (0.603209) | |
| hlv (0.557025) | |
| ese (0.506009) | |
| eru (0.480192) | |
| hyp (0.42851) | |
| lnt (0.426925) | |
| amn (0.417711) | |
| cov (0.396458) | |
| eje (0.395335) | |
| nlu (0.383362) | |
| ill (0.351185) | |
| fbs (0.350693) | |
| duo (0.345602) | |
| jca (0.34188) | |
| csp (0.322373) | |
| pty (0.285429) | |
| pla (0.267344) | |
| ute (0.265569) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| med (0.232504) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| col (0.195008) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |