Ss1.1-Tes1-TES01C090018.5
|
CAGACAGCTAGCGGCGGCGTTTTGTTCGGTTCCGGGCGCTCGGAGTGGACCCAGAAAAGC
TGAAAAGCCATGATGGCTACGAAGCCCAAGCTCCACTATCCCAATGGACGAGGCCGGATG
GAATCCGTGAGATGGGTTTTAGCTGCCGCAGGAGTCGAGTTTGATGAAGAATTTTTAGAA
ACAAAAGAACAGTTGCAGAAGTTGCAGGATGGGAACCACCTGCTGTTCCAGCAAGTGCCC
ATGGTTGAGATTGACGGGATGAAGTTGGTGCAGACCCGAAGCATCCTCCACTATATAGCA
GACAAGCACCATCTCTTCGGCAAAGACCTCAAGGAGAGAACCCTGATTGACATGTATGTG
GAGGGGACACTGGACCTTCTGGAACTGATTATCATGCATCCTTTCCTCAAACCAGACGAT
CAGCAAAAGGAAGTGGTTAACATGGCCCAGAAGGCTATCATTAGATACTTTCCTGTGTTC
GAAAAGGTGTTACGGGGTCATGGACAAAGATTTCTTGTCGGTAATCAGCTGAGCCTTGCA
GACATAATTCTGCTCCAGACCATTTTGGCTCTTGAAGAGAAAATTCCTAATATCCTGTCT
GCCTTTCCTCACCTCCAGGAGTTCACAGTGAAAATAAGTAATATCCCTACAATTAAGAAA
TTCCTTGAACCTGGCAGCAAGAAGAAGCCTCCCCCGGATGACATCTACGTGAGGACCGTG
TATAACATCTTTATGCCGTAGACCTGCCTGCGGCCGTGAGTGAACGCCGTGCACAGAGAT
CGCTGTGTCCACAGTAGTGTCTTAACTGAAGCCAGGCTGCCGTGATCCAGCTCTGTCGTG
GTACTGTGTATCTTGTTCCTCAGTTGGTCTTTCATGTCAAGGAGATAGATCTCTTCTAGA
AACACTGACTCTCTTTTCTGTCCCGTGAGTGTTACAGGACCTCTTCTGAAAACCCTTTTG
GAGAGGCTGGTGTTTAAAAGTTAGATCTACTCTGTCAATTCATTTCCTGGTAGCAAGGAT
GGGCAGGACCTCGAGCTGTCCCCTGAGCCTCTTTTCTCCTCTCCTTATCCTGTTCTCAAC
CCCTTCCAGTCTCTTCCTGTTTTTAGCGTCTAATAACAACAGAATCCACTACATGTGAGT
AACTCTCTCCTCTGAGCTGTAATAGACCCATGGTTGTGATGAACGCAGTTGATGTTTGCC
AAAATAAAGGATTTACAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAGACAGCTAGCGGCGGCGTTTTGTTCGGTTCCGGGCGCTCGGAGTGGACCCAGAAAAGC
TGAAAAGCCATGATGGCTACGAAGCCCAAGCTCCACTATCCCAATGGACGAGGCCGGATG
GAATCCGTGAGATGGGTTTTAGCTGCCGCAGGAGTCGAGTTTGATGAAGAATTTTTAGAA
ACAAAAGAACAGTTGCAGAAGTTGCAGGATGGGAACCACCTGCTGTTCCAGCAAGTGCCC
ATGGTTGAGATTGACGGGATGAAGTTGGTGCAGACCCGAAGCATCCTCCACTATATAGCA
GACAAGCACCATCTCTTCGGCAAAGACCTCAAGGAGAGAACCCTGATTGACATGTATGTG
GAGGGGACACTGGACCTTCTGGAACTGATTATCATGCATCCTTTCCTCAAACCAGACGAT
CAGCAAAAGGAAGTGGTTAACATGGCCCAGAAGGCTATCATTAGATACTTTCCTGTGTTC
GAAAAGGTGTTACGGGGTCATGGACAAAGATTTCTTGTCGGTAATCAGCTGAGCCTTGCA
GACATAATTCTGCTCCAGACCATTTTGGCTCTTGAAGAGAAAATTCCTAATATCCTGTCT
GCCTTTCCTCACCTCCAGGAGTTCACAGTGAAAATAAGTAATATCCCTACAATTAAGAAA
TTCCTTGAACCTGGCAGCAAGAAGAAGCCTCCCCCGGATGACATCTACGTGAGGACCGTG
TATAACATCTTTATGCCGTAGACCTGCCTGCGGCCGTGAGTGAACGCCGTGCACAGAGAT
CGCTGTGTCCACAGTAGTGTCTTAACTGAAGCCAGGCTGCCGTGATCCAGCTCTGTCGTG
GTACTGTGTATCTTGTTCCTCAGTTGGTCTTTCATGTCAAGGAGATAGATCTCTTCTAGA
AACACTGACTCTCTTTTCTGTCCCGTGAGTGTTACAGGACCTCTTCTGAAAACCCTTTTG
GAGAGGCTGGTGTTTAAAAGTTAGATCTACTCTGTCAATTCATTTCCTGGTAGCAAGGAT
GGGCAGGACCTCGAGCTGTCCCCTGAGCCTCTTTTCTCCTCTCCTTATCCTGTTCTCAAC
CCCTTCCAGTCTCTTCCTGTTTTTAGCGTCTAATAACAACAGAATCCACTACATGTGAGT
AACTCTCTCCTCTGAGCTGTAATAGACCCATGGTTGTGATGAACGCAGTTGATGTTTGCC
AAAATAAAGGATTTACAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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gi|62751789|ref|NP_001015651.1| |
Protein identifier
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gi|62751789|ref|NP_001015651.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
52-159, gnl|bosTau2|chr23 (22671195-22671302) |
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52-159, gnl|canFam2|chr12 (23442441-23442650) |
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52-159, gnl|dasNov1|scaffold_2127 (97746-97564) |
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52-159, gnl|echTel1|scaffold_133456 (455-625) |
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52-159, gnl|galGal2|chr3 (86661712-86661532) |
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52-159, gnl|hg17|chr6 (52966885-52967063) |
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52-159, gnl|Hg17|chr6 (52967021-52966914) |
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52-159, gnl|loxAfr1|scaffold_10468 (29586-29408) |
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52-159, gnl|mm7|chr9 (78219589-78219369) |
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52-159, gnl|Mm7|chr9 (78219455-78219558) |
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52-159, gnl|monDom2|scaffold_0 (184238435-184238222) |
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52-159, gnl|oryCun1|scaffold_206578 (111568-111757) |
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52-159, gnl|panTro1|chr5 (53990411-53990589) |
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52-159, gnl|rheMac2|chr4 (52593404-52593582) |
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52-159, gnl|rn3|chr8 (83169090-83168870) |
| |
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345-488, gnl|bosTau2|chr23 (22679492-22679635) |
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345-488, gnl|Hg17|chr6 (52957362-52957219) |
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345-488, gnl|Mm7|chr9 (78248803-78248946) |
| |
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600-1222, gnl|bosTau2|chr23 (22683423-22684039) |
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600-1222, gnl|Hg17|chr6 (52951366-52950712) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
52-159, gnl|bosTau2|chr23 (22671195-22671302) |
|
52-159, gnl|canFam2|chr12 (23442441-23442650) |
|
52-159, gnl|dasNov1|scaffold_2127 (97746-97564) |
|
52-159, gnl|echTel1|scaffold_133456 (455-625) |
|
52-159, gnl|galGal2|chr3 (86661712-86661532) |
|
52-159, gnl|hg17|chr6 (52966885-52967063) |
|
52-159, gnl|Hg17|chr6 (52967021-52966914) |
|
52-159, gnl|loxAfr1|scaffold_10468 (29586-29408) |
|
52-159, gnl|mm7|chr9 (78219589-78219369) |
|
52-159, gnl|Mm7|chr9 (78219455-78219558) |
|
52-159, gnl|monDom2|scaffold_0 (184238435-184238222) |
|
52-159, gnl|oryCun1|scaffold_206578 (111568-111757) |
|
52-159, gnl|panTro1|chr5 (53990411-53990589) |
|
52-159, gnl|rheMac2|chr4 (52593404-52593582) |
|
52-159, gnl|rn3|chr8 (83169090-83168870) |
| |
|
345-488, gnl|bosTau2|chr23 (22679492-22679635) |
|
345-488, gnl|Hg17|chr6 (52957362-52957219) |
|
345-488, gnl|Mm7|chr9 (78248803-78248946) |
| |
|
600-1222, gnl|bosTau2|chr23 (22683423-22684039) |
|
600-1222, gnl|Hg17|chr6 (52951366-52950712) |
|
cbr (2.30356) |
|
ecc (1.03532) |
|
ebs (0.709807) |
|
ece (0.687916) |
|
fcc (0.593354) |
|
med (0.58126) |
|
cov (0.528611) |
|
fhi (0.508733) |
|
elu (0.385356) |
|
eye (0.341006) |
|
fce (0.271592) |
|
pla (0.267344) |
|
ova (0.258264) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
spc (0.226732) |
|
fli (0.202881) |
|
nep (0.183925) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
ese (0.126502) |
|
bla (0.124347) |
|
eje (0.0988338) |
|
cbr (2.30356) |
|
ecc (1.03532) |
|
ebs (0.709807) |
|
ece (0.687916) |
|
fcc (0.593354) |
|
med (0.58126) |
|
cov (0.528611) |
|
fhi (0.508733) |
|
elu (0.385356) |
|
eye (0.341006) |
|
fce (0.271592) |
|
pla (0.267344) |
|
ova (0.258264) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
spc (0.226732) |
|
fli (0.202881) |
|
nep (0.183925) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
ese (0.126502) |
|
bla (0.124347) |
|
eje (0.0988338) |