Ss1.1-Tes1-TES01C090094.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCTCTGCTCCTTCCTGATGGCTTAGAGACTCTCCTTAACTCCCAGCCATGGATCTTGG AGAATTTCCCCTGAGATCAGCAGGAGGGAGGAGATGCCTTTCCACCATGTGACCGCTGGC CTGTTGTACAAAGGGAATTACCTCAACCGATCTCTCTCTGCTGGCAGCGACAGCGAGCAG CTGGCCAACATCTCTGTGGAGGAGCTTGACGAAATCCGAGAGGCCTTTCGGGTTCTGGAC CGAGACGGCAATGGCTTCATCTCCAAGCAGGAGCTGGGAATGGCCATGCGATCTTTGGGG TACATGCCGAGTGAGGTGGAGCTGGCCATCATCATGCAGCGTCTGGACATGGACGGGGAT GGCCAGGTGGATTTTGATGAATTCATGACAATTCTTGGCCCCAAACTGGTGTCTTCAGAA GGTCGCGATGGTTTTCTTGGAAACACAATAGACAGCATATTCTGGCAGTTTGACATGCAG AGGATAACTCTGGAAGAGCTGAAGCACATCCTCTATCACGCCTTCCGGGACCACTTAACC ATGAAAGACATTGAGAATATCATTATCAATGAGGAGGAGAGCCTGAACGAGACCTCGGGG AACTGCCAGACAGAGTTCGAGGGCGTGCATTCCCAGAAGCAGAACCGGCAGACCTGCGTC CGGAAGAGCCTCATCTGCGCCTTCGCCATGGCCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCTCTGCTCCTTCCTGATGGCTTAGAGACTCTCCTTAACTCCCAGCCATGGATCTTGG AGAATTTCCCCTGAGATCAGCAGGAGGGAGGAGATGCCTTTCCACCATGTGACCGCTGGC CTGTTGTACAAAGGGAATTACCTCAACCGATCTCTCTCTGCTGGCAGCGACAGCGAGCAG CTGGCCAACATCTCTGTGGAGGAGCTTGACGAAATCCGAGAGGCCTTTCGGGTTCTGGAC CGAGACGGCAATGGCTTCATCTCCAAGCAGGAGCTGGGAATGGCCATGCGATCTTTGGGG TACATGCCGAGTGAGGTGGAGCTGGCCATCATCATGCAGCGTCTGGACATGGACGGGGAT GGCCAGGTGGATTTTGATGAATTCATGACAATTCTTGGCCCCAAACTGGTGTCTTCAGAA GGTCGCGATGGTTTTCTTGGAAACACAATAGACAGCATATTCTGGCAGTTTGACATGCAG AGGATAACTCTGGAAGAGCTGAAGCACATCCTCTATCACGCCTTCCGGGACCACTTAACC ATGAAAGACATTGAGAATATCATTATCAATGAGGAGGAGAGCCTGAACGAGACCTCGGGG AACTGCCAGACAGAGTTCGAGGGCGTGCATTCCCAGAAGCAGAACCGGCAGACCTGCGTC CGGAAGAGCCTCATCTGCGCCTTCGCCATGGCCTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 211-359, + strand, RNAz p=0.782074 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 211-359, + strand, RNAz p=0.782074 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 211-359, gnl|bosTau2|chr17 (41607453-41607601) | |
| 211-359, gnl|canFam2|chr26 (25953162-25953331) | |
| 211-359, gnl|danRer3|chr5 (28151138-28151302) | |
| 211-359, gnl|dasNov1|scaffold_11853 (62473-62297) | |
| 211-359, gnl|echTel1|scaffold_294358 (92253-92093) | |
| 211-359, gnl|fr1|chrUn (32097354-32097189) | |
| 211-359, gnl|galGal2|chrUn (126762338-126762500) | |
| 211-359, gnl|hg17|chr22 (28448198-28448364) | |
| 211-359, gnl|Hg17|chr22 (28448204-28448352) | |
| 211-359, gnl|loxAfr1|scaffold_428 (112067-111901) | |
| 211-359, gnl|mm7|chr11 (4692523-4692360) | |
| 211-359, gnl|Mm7|chr11 (4692516-4692368) | |
| 211-359, gnl|monDom2|scaffold_89 (3589543-3589707) | |
| 211-359, gnl|oryCun1|scaffold_173706 (46304-46142) | |
| 211-359, gnl|panTro1|chr23 (28539004-28539170) | |
| 211-359, gnl|rheMac2|chr10 (73570445-73570613) | |
| 211-359, gnl|rn3|chr14 (85408099-85407936) | |
| 211-359, gnl|tetNig1|chr12 (4621691-4621847) | |
| 211-359, gnl|xenTro1|scaffold_207 (604478-604634) | |
| 467-583, gnl|bosTau2|chr17 (41609049-41609165) | |
| 467-583, gnl|canFam2|chr26 (25954575-25954702) | |
| 467-583, gnl|danRer3|chr5 (28152170-28152294) | |
| 467-583, gnl|dasNov1|scaffold_11853 (61156-61029) | |
| 467-583, gnl|echTel1|scaffold_294358 (91376-91249) | |
| 467-583, gnl|fr1|chrUn (32096043-32095919) | |
| 467-583, gnl|galGal2|chr15 (10923825-10923708) | |
| 467-583, gnl|hg17|chr22 (28449597-28449724) | |
| 467-583, gnl|Hg17|chr22 (28449596-28449712) | |
| 467-583, gnl|loxAfr1|scaffold_428 (110874-110747) | |
| 467-583, gnl|mm7|chr11 (4691283-4691156) | |
| 467-583, gnl|Mm7|chr11 (4691282-4691166) | |
| 467-583, gnl|oryCun1|scaffold_211486 (64639-64523) | |
| 467-583, gnl|panTro1|chr23 (28540397-28540502) | |
| 467-583, gnl|rheMac2|chr10 (73571858-73571984) | |
| 467-583, gnl|rn3|chr14 (85406990-85406863) | |
| 467-583, gnl|tetNig1|chr12 (4622730-4622854) | |
| 467-583, gnl|xenTro1|scaffold_207 (619926-620053) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 211-359, gnl|bosTau2|chr17 (41607453-41607601) | |
| 211-359, gnl|canFam2|chr26 (25953162-25953331) | |
| 211-359, gnl|danRer3|chr5 (28151138-28151302) | |
| 211-359, gnl|dasNov1|scaffold_11853 (62473-62297) | |
| 211-359, gnl|echTel1|scaffold_294358 (92253-92093) | |
| 211-359, gnl|fr1|chrUn (32097354-32097189) | |
| 211-359, gnl|galGal2|chrUn (126762338-126762500) | |
| 211-359, gnl|hg17|chr22 (28448198-28448364) | |
| 211-359, gnl|Hg17|chr22 (28448204-28448352) | |
| 211-359, gnl|loxAfr1|scaffold_428 (112067-111901) | |
| 211-359, gnl|mm7|chr11 (4692523-4692360) | |
| 211-359, gnl|Mm7|chr11 (4692516-4692368) | |
| 211-359, gnl|monDom2|scaffold_89 (3589543-3589707) | |
| 211-359, gnl|oryCun1|scaffold_173706 (46304-46142) | |
| 211-359, gnl|panTro1|chr23 (28539004-28539170) | |
| 211-359, gnl|rheMac2|chr10 (73570445-73570613) | |
| 211-359, gnl|rn3|chr14 (85408099-85407936) | |
| 211-359, gnl|tetNig1|chr12 (4621691-4621847) | |
| 211-359, gnl|xenTro1|scaffold_207 (604478-604634) | |
| 467-583, gnl|bosTau2|chr17 (41609049-41609165) | |
| 467-583, gnl|canFam2|chr26 (25954575-25954702) | |
| 467-583, gnl|danRer3|chr5 (28152170-28152294) | |
| 467-583, gnl|dasNov1|scaffold_11853 (61156-61029) | |
| 467-583, gnl|echTel1|scaffold_294358 (91376-91249) | |
| 467-583, gnl|fr1|chrUn (32096043-32095919) | |
| 467-583, gnl|galGal2|chr15 (10923825-10923708) | |
| 467-583, gnl|hg17|chr22 (28449597-28449724) | |
| 467-583, gnl|Hg17|chr22 (28449596-28449712) | |
| 467-583, gnl|loxAfr1|scaffold_428 (110874-110747) | |
| 467-583, gnl|mm7|chr11 (4691283-4691156) | |
| 467-583, gnl|Mm7|chr11 (4691282-4691166) | |
| 467-583, gnl|oryCun1|scaffold_211486 (64639-64523) | |
| 467-583, gnl|panTro1|chr23 (28540397-28540502) | |
| 467-583, gnl|rheMac2|chr10 (73571858-73571984) | |
| 467-583, gnl|rn3|chr14 (85406990-85406863) | |
| 467-583, gnl|tetNig1|chr12 (4622730-4622854) | |
| 467-583, gnl|xenTro1|scaffold_207 (619926-620053) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |