Ss1.1-Tes1-TES01C100030.5
|
CCTGAAGATGATGGCCAACGGGGGCATCCGAGACCACGTGGGACAGGGCTTCCACCGCTA
CTCCACGGACCGCCAGTGGCACGTCCCCCACTTTGAGAAGATGCTGTATGACCAGGCACA
GCTCACGGTGGCCTATTCACAGGCCTTCCAGATCTCTGGTGACGAGTTCTACTCCGATGT
CGCCAAAGGCATTCTGCAGTACGTGGCCCGGAACCTGAGTCACCGGTCTGGAGGCTTCTA
CAGTGCCGAGGACGCGGACTCGCCTCCAGAGCGGGGCATGCGGCCCAAAGAGGGGGCCTT
CTACTTGTGGACTGTCAAAGAGGTCCAGCAGCTCCTCCCGGAGCATGTACCAGGTGCCAC
TGAGCCCCTGACCTCAGGCCAGCTCCTCATGAAGCACTATGGGCTCACGGAGGCTGGCAA
CATCAGCCCGAGCCAGGACCCCAAGGGGGAGCTGCAGGGCCAGAACGTGCTGACTGTTCG
CTATTCGCTGGAGCTGACTGCCGCCCGCTTTGGCCTGGACGTGGAGGCTGTACAGACCCT
ACTCAATACGGGCCTCGAAAAGCTCTTCCAGGCCCGGAAACATCGGCCGAAGCCGCACCT
GGACAGCAAGATGCTGGCCGCCTGGAACGGACTGATGGTGTCTGGCTTTGCTGTGACCGG
GGCTGTCCTGGGCCAGGAGAGGCTGATCAACTATGCCATCAATGGCGCCAAGTTCCTGAA
GCGACACATGTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTGAAGATGATGGCCAACGGGGGCATCCGAGACCACGTGGGACAGGGCTTCCACCGCTA
CTCCACGGACCGCCAGTGGCACGTCCCCCACTTTGAGAAGATGCTGTATGACCAGGCACA
GCTCACGGTGGCCTATTCACAGGCCTTCCAGATCTCTGGTGACGAGTTCTACTCCGATGT
CGCCAAAGGCATTCTGCAGTACGTGGCCCGGAACCTGAGTCACCGGTCTGGAGGCTTCTA
CAGTGCCGAGGACGCGGACTCGCCTCCAGAGCGGGGCATGCGGCCCAAAGAGGGGGCCTT
CTACTTGTGGACTGTCAAAGAGGTCCAGCAGCTCCTCCCGGAGCATGTACCAGGTGCCAC
TGAGCCCCTGACCTCAGGCCAGCTCCTCATGAAGCACTATGGGCTCACGGAGGCTGGCAA
CATCAGCCCGAGCCAGGACCCCAAGGGGGAGCTGCAGGGCCAGAACGTGCTGACTGTTCG
CTATTCGCTGGAGCTGACTGCCGCCCGCTTTGGCCTGGACGTGGAGGCTGTACAGACCCT
ACTCAATACGGGCCTCGAAAAGCTCTTCCAGGCCCGGAAACATCGGCCGAAGCCGCACCT
GGACAGCAAGATGCTGGCCGCCTGGAACGGACTGATGGTGTCTGGCTTTGCTGTGACCGG
GGCTGTCCTGGGCCAGGAGAGGCTGATCAACTATGCCATCAATGGCGCCAAGTTCCTGAA
GCGACACATGTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
226-437, gnl|bosTau2|chr19 (28873207-28872996) |
|
226-437, gnl|canFam2|chr9 (29795690-29795931) |
|
226-437, gnl|danRer3|chr12 (26050301-26050073) |
|
226-437, gnl|echTel1|scaffold_300290 (2879-2637) |
|
226-437, gnl|fr1|chrUn (174153624-174153396) |
|
226-437, gnl|galGal2|chr3_random (1024968-1024614) |
|
226-437, gnl|hg17|chr17 (45983051-45983293) |
|
226-437, gnl|Hg17|chr17 (45983067-45983278) |
|
226-437, gnl|loxAfr1|scaffold_10825 (29059-28819) |
|
226-437, gnl|mm7|chr11 (94592046-94591804) |
|
226-437, gnl|Mm7|chr11 (94592028-94591817) |
|
226-437, gnl|monDom2|scaffold_230 (397829-398071) |
|
226-437, gnl|oryCun1|scaffold_213401 (69617-69859) |
|
226-437, gnl|panTro1|chr19_random (31620052-31620294) |
|
226-437, gnl|rheMac2|chr16 (34791865-34792107) |
|
226-437, gnl|rn3|chr10 (83136426-83136184) |
|
226-437, gnl|tetNig1|chrUn_random (4316283-4316065) |
|
226-437, gnl|xenTro1|scaffold_485 (334949-335163) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
226-437, gnl|bosTau2|chr19 (28873207-28872996) |
|
226-437, gnl|canFam2|chr9 (29795690-29795931) |
|
226-437, gnl|danRer3|chr12 (26050301-26050073) |
|
226-437, gnl|echTel1|scaffold_300290 (2879-2637) |
|
226-437, gnl|fr1|chrUn (174153624-174153396) |
|
226-437, gnl|galGal2|chr3_random (1024968-1024614) |
|
226-437, gnl|hg17|chr17 (45983051-45983293) |
|
226-437, gnl|Hg17|chr17 (45983067-45983278) |
|
226-437, gnl|loxAfr1|scaffold_10825 (29059-28819) |
|
226-437, gnl|mm7|chr11 (94592046-94591804) |
|
226-437, gnl|Mm7|chr11 (94592028-94591817) |
|
226-437, gnl|monDom2|scaffold_230 (397829-398071) |
|
226-437, gnl|oryCun1|scaffold_213401 (69617-69859) |
|
226-437, gnl|panTro1|chr19_random (31620052-31620294) |
|
226-437, gnl|rheMac2|chr16 (34791865-34792107) |
|
226-437, gnl|rn3|chr10 (83136426-83136184) |
|
226-437, gnl|tetNig1|chrUn_random (4316283-4316065) |
|
226-437, gnl|xenTro1|scaffold_485 (334949-335163) |
