Ss1.1-Tes1-TES01C120035.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGCACCCAGCCGCCCGCGCCCCGCGGTGCGCGCCCCGCACCAGGACCCGCCGCCCTCT CTGCGCGACTCCCAGGCACGCCCGCGCGCGTGCCCGTGCCCGTCCCCGCCCGCCAGCGCT GCTGAAGATGGCGAGCCCGGCGCCCAAGGAGCCAGCCGCGCAGGGATGCCCGGCTCCAGC CGCCGCGGAGCAGGCGCCGCCGCCCCGGGCTCCCGCAAATGCTGGGCAGCTGGGCTGTGC CTGCTCCCCGCCGCCTGTCACGGTCCTGGGAGTAAGAGGTGACCTAGTTATTTTTAGAAG GAGACCGTGCTAATAACCCGGCTCCGCGCTTCATTCAAGGCAGGCGGTCGCTTCGGAAAT TTGTAAACACCGACTTTCTGAGTGAGGGAGGAGCGCTTTTCTCCAGAGAGGAAAGAAAAA CCACTGAGGTTTTCCCCTCCTCATGGTCATCCCTTAGGGTGGAGAAGAAACTCTTGTAGC ACGAAAAGTGTTGCAGCCTTTTCCACTTGCTGCGTATTGTTTTTGAAGGGCAGACATGCC TGAAGGCGAGGACTTTGGACCAGGCAAAAGCTGGGAAGTTATCAATTCCAAACCAGACGA CAGACCCGGGCTCAGCCACTGTATCGCAGAATCATGGATGAATTTCAGCATATTTCTTCA AGAAATGTCTGTTTTTAAACAGCAAAGCCCTGGCAAGTTTTGTCTCCTGGTCTGCAGTGT GTGCACATTTTTCACAATCTTGGGAAGTTACATTCCTGGGGTTATACTCAGCTATCTACT GTTATTGTGTGCATTTTTGTGTCCACTGCTTAAGTGTAATGATATTGGACAAAAAATATA CAGCAAAATCAAGTCATTTCTCCTGAAACTAGATTTTGGAATCAGAGAATACATTAACCA GAAGAGACGTGAGAGATCTGAAGCAGATAAAGAAAAAAGTCACAAAGATGACAGTGAATT AGACTTTTCAGCTCTTTGCCCTAAGATTAGCCTCACTGTTGCCGCCAAGGAGTTGTCTGT GTCTGACACGGACGTGTCCGAGGTCTCCTGGACTGACAACGGGACCTTCAACCTTTCAGA AGGATACACTCCACAGACAGACACTTCTGATGATCTTGACCGACCTAGTGAGGAAGTTTT CTCTCGAGACCTTTCAGATTTTCCATCTCTAGAAAATGGCATGGGAACAAATGATGAGGA TGAATTAAGCCTTGGCTTGCCCACTGAGCTCAAGAGAAAAAAGGAACAGTTGGACAGCGG TCCCAGACCAAGCAAAGAGAGGCACTCAGCCGCTGGTCTCACCCTTCCTCTGAGCAGTGA CCAAACCTTCCACTTGATGAGCAACCTGGCCGGGAATGTCATCACCGCTGCAGTGACGGC CGCCATCAAAGACCAGTTAGAGGGCGCGCAGCAAGTGCTGACGCAGGCTGCACCCAGCCT GGGGGAGGACACAGACACTGAGGAAGGGGATGACTTTGAACTCCTTGACCAGTCAGAGCT CGATCAGATTGAGAGTGAACTGGGACTTTCACAAGACCAGGAAGCGGAAACACAGCAAAA TAAGAAGTCTTCAGGCTTCCTTTCAAATCTACTCGGAGGCCATTAGTCTGGGAATCAGCT TGTATCACAGAGCACAGATAAACTACCAAAAAATTTCAAACAAGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGCACCCAGCCGCCCGCGCCCCGCGGTGCGCGCCCCGCACCAGGACCCGCCGCCCTCT CTGCGCGACTCCCAGGCACGCCCGCGCGCGTGCCCGTGCCCGTCCCCGCCCGCCAGCGCT GCTGAAGATGGCGAGCCCGGCGCCCAAGGAGCCAGCCGCGCAGGGATGCCCGGCTCCAGC CGCCGCGGAGCAGGCGCCGCCGCCCCGGGCTCCCGCAAATGCTGGGCAGCTGGGCTGTGC CTGCTCCCCGCCGCCTGTCACGGTCCTGGGAGTAAGAGGTGACCTAGTTATTTTTAGAAG GAGACCGTGCTAATAACCCGGCTCCGCGCTTCATTCAAGGCAGGCGGTCGCTTCGGAAAT TTGTAAACACCGACTTTCTGAGTGAGGGAGGAGCGCTTTTCTCCAGAGAGGAAAGAAAAA CCACTGAGGTTTTCCCCTCCTCATGGTCATCCCTTAGGGTGGAGAAGAAACTCTTGTAGC ACGAAAAGTGTTGCAGCCTTTTCCACTTGCTGCGTATTGTTTTTGAAGGGCAGACATGCC TGAAGGCGAGGACTTTGGACCAGGCAAAAGCTGGGAAGTTATCAATTCCAAACCAGACGA CAGACCCGGGCTCAGCCACTGTATCGCAGAATCATGGATGAATTTCAGCATATTTCTTCA AGAAATGTCTGTTTTTAAACAGCAAAGCCCTGGCAAGTTTTGTCTCCTGGTCTGCAGTGT GTGCACATTTTTCACAATCTTGGGAAGTTACATTCCTGGGGTTATACTCAGCTATCTACT GTTATTGTGTGCATTTTTGTGTCCACTGCTTAAGTGTAATGATATTGGACAAAAAATATA CAGCAAAATCAAGTCATTTCTCCTGAAACTAGATTTTGGAATCAGAGAATACATTAACCA GAAGAGACGTGAGAGATCTGAAGCAGATAAAGAAAAAAGTCACAAAGATGACAGTGAATT AGACTTTTCAGCTCTTTGCCCTAAGATTAGCCTCACTGTTGCCGCCAAGGAGTTGTCTGT GTCTGACACGGACGTGTCCGAGGTCTCCTGGACTGACAACGGGACCTTCAACCTTTCAGA AGGATACACTCCACAGACAGACACTTCTGATGATCTTGACCGACCTAGTGAGGAAGTTTT CTCTCGAGACCTTTCAGATTTTCCATCTCTAGAAAATGGCATGGGAACAAATGATGAGGA TGAATTAAGCCTTGGCTTGCCCACTGAGCTCAAGAGAAAAAAGGAACAGTTGGACAGCGG TCCCAGACCAAGCAAAGAGAGGCACTCAGCCGCTGGTCTCACCCTTCCTCTGAGCAGTGA CCAAACCTTCCACTTGATGAGCAACCTGGCCGGGAATGTCATCACCGCTGCAGTGACGGC CGCCATCAAAGACCAGTTAGAGGGCGCGCAGCAAGTGCTGACGCAGGCTGCACCCAGCCT GGGGGAGGACACAGACACTGAGGAAGGGGATGACTTTGAACTCCTTGACCAGTCAGAGCT CGATCAGATTGAGAGTGAACTGGGACTTTCACAAGACCAGGAAGCGGAAACACAGCAAAA TAAGAAGTCTTCAGGCTTCCTTTCAAATCTACTCGGAGGCCATTAGTCTGGGAATCAGCT TGTATCACAGAGCACAGATAAACTACCAAAAAATTTCAAACAAGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 297-389, - strand, RNAz p=0.516588 | |
| 365-570, + strand, RNAz p=0.858949 | |
| 427-518, - strand, RNAz p=0.948947 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 297-389, - strand, RNAz p=0.516588 | |
| 365-570, + strand, RNAz p=0.858949 | |
| 427-518, - strand, RNAz p=0.948947 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_019000, - | |
| 3' of NM_019000, + |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 214-570, gnl|bosTau2|chr20 (32641270-32641628) | |
| 214-570, gnl|canFam2|chr4 (90096317-90095207) | |
| 214-570, gnl|dasNov1|scaffold_56403 (178-1187) | |
| 214-570, gnl|echTel1|scaffold_264591 (3733-2639) | |
| 214-570, gnl|hg17|chr5 (16561192-16562242) | |
| 214-570, gnl|Hg17|chr5 (16562056-16561687) | |
| 214-570, gnl|loxAfr1|scaffold_15350 (37120-38130) | |
| 214-570, gnl|mm7|chr15 (26044565-26043600) | |
| 214-570, gnl|Mm7|chr15 (26043774-26044130) | |
| 214-570, gnl|monDom2|scaffold_4 (39126527-39127586) | |
| 214-570, gnl|panTro1|chr4 (16991175-16992215) | |
| 214-570, gnl|rheMac2|chr6 (16704494-16705531) | |
| 214-570, gnl|rn3|chr2 (77455323-77454408) | |
| 786-920, gnl|bosTau2|chr20 (32685534-32685668) | |
| 786-920, gnl|canFam2|chr4 (90125723-90125551) | |
| 786-920, gnl|danRer3|chr24 (7488432-7488282) | |
| 786-920, gnl|dasNov1|scaffold_3543 (45527-45696) | |
| 786-920, gnl|fr1|chrUn (267423128-267423274) | |
| 786-920, gnl|galGal2|chr2 (75653375-75653203) | |
| 786-920, gnl|hg17|chr5 (16531952-16532119) | |
| 786-920, gnl|Hg17|chr5 (16532093-16531959) | |
| 786-920, gnl|loxAfr1|scaffold_75536 (8304-8477) | |
| 786-920, gnl|mm7|chr15 (26071601-26071429) | |
| 786-920, gnl|Mm7|chr15 (26071458-26071592) | |
| 786-920, gnl|monDom2|scaffold_4 (39084120-39084287) | |
| 786-920, gnl|oryCun1|scaffold_193542 (26697-26869) | |
| 786-920, gnl|panTro1|chr4 (16961968-16962135) | |
| 786-920, gnl|rheMac2|chr6 (16673351-16673518) | |
| 786-920, gnl|rn3|chr2 (77488684-77488512) | |
| 786-920, gnl|xenTro1|scaffold_121 (994392-994577) | |
| 1112-1668, gnl|bosTau2|chr20 (32690161-32690715) | |
| 1112-1668, gnl|Hg17|chr5 (16528344-16527791) | |
| 1112-1668, gnl|Mm7|chr15 (26074600-26075163) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 214-570, gnl|bosTau2|chr20 (32641270-32641628) | |
| 214-570, gnl|canFam2|chr4 (90096317-90095207) | |
| 214-570, gnl|dasNov1|scaffold_56403 (178-1187) | |
| 214-570, gnl|echTel1|scaffold_264591 (3733-2639) | |
| 214-570, gnl|hg17|chr5 (16561192-16562242) | |
| 214-570, gnl|Hg17|chr5 (16562056-16561687) | |
| 214-570, gnl|loxAfr1|scaffold_15350 (37120-38130) | |
| 214-570, gnl|mm7|chr15 (26044565-26043600) | |
| 214-570, gnl|Mm7|chr15 (26043774-26044130) | |
| 214-570, gnl|monDom2|scaffold_4 (39126527-39127586) | |
| 214-570, gnl|panTro1|chr4 (16991175-16992215) | |
| 214-570, gnl|rheMac2|chr6 (16704494-16705531) | |
| 214-570, gnl|rn3|chr2 (77455323-77454408) | |
| 786-920, gnl|bosTau2|chr20 (32685534-32685668) | |
| 786-920, gnl|canFam2|chr4 (90125723-90125551) | |
| 786-920, gnl|danRer3|chr24 (7488432-7488282) | |
| 786-920, gnl|dasNov1|scaffold_3543 (45527-45696) | |
| 786-920, gnl|fr1|chrUn (267423128-267423274) | |
| 786-920, gnl|galGal2|chr2 (75653375-75653203) | |
| 786-920, gnl|hg17|chr5 (16531952-16532119) | |
| 786-920, gnl|Hg17|chr5 (16532093-16531959) | |
| 786-920, gnl|loxAfr1|scaffold_75536 (8304-8477) | |
| 786-920, gnl|mm7|chr15 (26071601-26071429) | |
| 786-920, gnl|Mm7|chr15 (26071458-26071592) | |
| 786-920, gnl|monDom2|scaffold_4 (39084120-39084287) | |
| 786-920, gnl|oryCun1|scaffold_193542 (26697-26869) | |
| 786-920, gnl|panTro1|chr4 (16961968-16962135) | |
| 786-920, gnl|rheMac2|chr6 (16673351-16673518) | |
| 786-920, gnl|rn3|chr2 (77488684-77488512) | |
| 786-920, gnl|xenTro1|scaffold_121 (994392-994577) | |
| 1112-1668, gnl|bosTau2|chr20 (32690161-32690715) | |
| 1112-1668, gnl|Hg17|chr5 (16528344-16527791) | |
| 1112-1668, gnl|Mm7|chr15 (26074600-26075163) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| che (0.545256) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| ste (0.270416) | |
| mas (0.210305) | |
| tes (0.207814) | |
| col (0.195008) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cje (0.165235) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.545256) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| ste (0.270416) | |
| mas (0.210305) | |
| tes (0.207814) | |
| col (0.195008) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cje (0.165235) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |