Non-Coding RNA Search

Ss1.1-Tes1-TES01D010095.5

Sequence:


               
               GGAGCTGGCTGGGCTGGGGGCCGCGGGATCGGCGCCCGCCTCGAGTGATGGGGCTCCCGC
CCGTGTAGGGGCCATGCCGCCCGGGCCCCGGGCCTGCCCCGCTCCGCGCCGGGATGGTCA
ACCTGGCGGCCATGGTGTGGCGCCGCCTCCTGAGGAAGAGGTGGGTGCTCGCCTTGGTCT
TCGGGCTCTCGCTCGTCTACTTCCTCACTAGCACCTTCAAGCAGGAGGAGAGGGCAGTGA
GAGATCGGAATCTCCTTCAGGTTCAAGACCATGATCAGCCCATTCCATGGAAAGTGCAAT
TTAACTTGGGCAACAGCAGTCGGCCCAGCAACCAGTGCCGGAATTCCATCCAAGGGAAGC
ACCTCATCACGGATGAACTGGGTTATGTTTGTGAAAGGAAGGATTTGCTGGTGAATGGCT
GCTGTAACGTCAATGTTCCTGGCACAAAGCAGTACTGCTGTGATGGCTGCTTGTCCAACG
GCTGCTGCAGTGCCTACGAGTACTGCGTCTCCTGCTGCCTGCAGCCCAGCAAGCAACTTC
TCCTGGAGCGCTTCCTTAACCGGGCAGCTGTGGCATTCCAGAACCTCTTCATGGCTGTTG
AAGACCACTTTGAATTGTGTTTGGCTAAATGCAGGACCTCATCCCAGAGCGTGCAACACA
AAAACACCTATAGGGATCCCATACCAAAGTACTGCTATGGAGAGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCTGGCTGGGCTGGGGGCCGCGGGATCGGCGCCCGCCTCGAGTGATGGGGCTCCCGC
CCGTGTAGGGGCCATGCCGCCCGGGCCCCGGGCCTGCCCCGCTCCGCGCCGGGATGGTCA
ACCTGGCGGCCATGGTGTGGCGCCGCCTCCTGAGGAAGAGGTGGGTGCTCGCCTTGGTCT
TCGGGCTCTCGCTCGTCTACTTCCTCACTAGCACCTTCAAGCAGGAGGAGAGGGCAGTGA
GAGATCGGAATCTCCTTCAGGTTCAAGACCATGATCAGCCCATTCCATGGAAAGTGCAAT
TTAACTTGGGCAACAGCAGTCGGCCCAGCAACCAGTGCCGGAATTCCATCCAAGGGAAGC
ACCTCATCACGGATGAACTGGGTTATGTTTGTGAAAGGAAGGATTTGCTGGTGAATGGCT
GCTGTAACGTCAATGTTCCTGGCACAAAGCAGTACTGCTGTGATGGCTGCTTGTCCAACG
GCTGCTGCAGTGCCTACGAGTACTGCGTCTCCTGCTGCCTGCAGCCCAGCAAGCAACTTC
TCCTGGAGCGCTTCCTTAACCGGGCAGCTGTGGCATTCCAGAACCTCTTCATGGCTGTTG
AAGACCACTTTGAATTGTGTTTGGCTAAATGCAGGACCTCATCCCAGAGCGTGCAACACA
AAAACACCTATAGGGATCCCATACCAAAGTACTGCTATGGAGAGAGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61829123|ref|XP_592484.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61829123|ref|XP_592484.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               18-244, gnl|bosTau2|chr15 (52676307-52676081)
               

               
               18-244, gnl|Hg17|chr12 (115638548-115638314)
               

               
               18-244, gnl|Mm7|chr5 (117474235-117474450)
               


               
               447-647, gnl|bosTau2|chr13 (29773801-29774000)
               

               
               447-647, gnl|Hg17|chr12 (115620907-115620288)
               

               
               447-647, gnl|Mm7|chr5 (117488032-117488479)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-244, gnl|bosTau2|chr15 (52676307-52676081)
               

               
               18-244, gnl|Hg17|chr12 (115638548-115638314)
               

               
               18-244, gnl|Mm7|chr5 (117474235-117474450)
               


               
               447-647, gnl|bosTau2|chr13 (29773801-29774000)
               

               
               447-647, gnl|Hg17|chr12 (115620907-115620288)
               

               
               447-647, gnl|Mm7|chr5 (117488032-117488479)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               duo (0.172801)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               sug (0.127291)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               sug (0.127291)
               

               
               eje (0.0988338)

	18-244, gnl\|bosTau2\|chr15 (52676307-52676081)
	18-244, gnl\|Hg17\|chr12 (115638548-115638314)
	18-244, gnl\|Mm7\|chr5 (117474235-117474450)

	447-647, gnl\|bosTau2\|chr13 (29773801-29774000)
	447-647, gnl\|Hg17\|chr12 (115620907-115620288)
	447-647, gnl\|Mm7\|chr5 (117488032-117488479)

	duo (0.172801)
	cje (0.165235)
	cst (0.140036)
	sug (0.127291)
	eje (0.0988338)