Non-Coding RNA Search

Ss1.1-Tes1-TES01D010110.5

Sequence:


               
               CGGGCCCAGGAGTCCACCAAGAAGCCCCCGAGCGCCACTCGTACCAGCAAGACCCAGCGT
CGCCGGCTGACAGGCAAAGCCCGGCACAGTGGGGAGTGAGACCGGCCAGCAGGCCATGCC
CGCCTGGGCTGCAAAGACCAGCATCTCAGCTTGGCTGTCCTCTAACCCAGCTTGCGCCCA
GGCGATGGCTCCACTGCCCAGGCTTAGGAGGCCAGCACCTCTCCGGCCTGGGGCTTGGGC
TCCAGAAGGCGCAGGCAGCTGAGAGCTGGCCTCCCCCGCCAGGAGCCTCCAGGGCCATTT
GGGACGTCTTCCCAGGTGTACACCCCATGGTCCCTTCAACAGACTCGTGAAGCTAAGCAC
ACTGTGGTTGGTTGGTCCCTGGCCCTGGTGCCACACACCAAGGGCAGGCGTTGGGGGTAG
TGGAACCCACTGGGGGCGTGGGTCATGCTCACTCTGCAGCAGCTTCCCCTGGGGCTGCGG
GAAGGCGCTGCCGGGGCCAGGCTCCTGACCAGGGCAGAAGGCCAGCACCACCCCCGGTGG
CGGAATCCAGAGTCCACCCTCTGCTCTGGAACATGGGCTGGTGGGTGAGCAGGCGGCCTC
AGGCTTCGCCTGGCCGAGACTCTGGGCCTGTCCTTTCTTGGCCTTGTTGGTCTCAGCTGA
TCTGAAGGGGCGGAGGTAAGCGAGTCCTGTGGTGTTCCTCACCCCAGGCTTCCAGCAGCT
CCCAGGCAGAGCCCAGCCAAGAAGGAACCATTAGTCCTTTGTCGAGAAAATATACCTCAA
CTCGCCAGGAAGCTTGGCCCTCTTGGAGCAGGCCCCCCGGGAGGCCACCGGTGTCCTGTG
AGGGCTCCCGATTCTTCACGCTTCTCCCACATGGACCTTCAGGTGCGGCTTCAGAGCCGA
TGAAAACCAGCCTTGCTCCTTCCACGTCCCGCGTGCGGGTGACCACCTCGCTCACACGCC
CCGCTGTTCTCCCGAGCAAGCAGGGCTGGTGGCGGAGTCCAGGCCCACCTGAGGCGGGTG
GATGCGGTGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCCCAGGAGTCCACCAAGAAGCCCCCGAGCGCCACTCGTACCAGCAAGACCCAGCGT
CGCCGGCTGACAGGCAAAGCCCGGCACAGTGGGGAGTGAGACCGGCCAGCAGGCCATGCC
CGCCTGGGCTGCAAAGACCAGCATCTCAGCTTGGCTGTCCTCTAACCCAGCTTGCGCCCA
GGCGATGGCTCCACTGCCCAGGCTTAGGAGGCCAGCACCTCTCCGGCCTGGGGCTTGGGC
TCCAGAAGGCGCAGGCAGCTGAGAGCTGGCCTCCCCCGCCAGGAGCCTCCAGGGCCATTT
GGGACGTCTTCCCAGGTGTACACCCCATGGTCCCTTCAACAGACTCGTGAAGCTAAGCAC
ACTGTGGTTGGTTGGTCCCTGGCCCTGGTGCCACACACCAAGGGCAGGCGTTGGGGGTAG
TGGAACCCACTGGGGGCGTGGGTCATGCTCACTCTGCAGCAGCTTCCCCTGGGGCTGCGG
GAAGGCGCTGCCGGGGCCAGGCTCCTGACCAGGGCAGAAGGCCAGCACCACCCCCGGTGG
CGGAATCCAGAGTCCACCCTCTGCTCTGGAACATGGGCTGGTGGGTGAGCAGGCGGCCTC
AGGCTTCGCCTGGCCGAGACTCTGGGCCTGTCCTTTCTTGGCCTTGTTGGTCTCAGCTGA
TCTGAAGGGGCGGAGGTAAGCGAGTCCTGTGGTGTTCCTCACCCCAGGCTTCCAGCAGCT
CCCAGGCAGAGCCCAGCCAAGAAGGAACCATTAGTCCTTTGTCGAGAAAATATACCTCAA
CTCGCCAGGAAGCTTGGCCCTCTTGGAGCAGGCCCCCCGGGAGGCCACCGGTGTCCTGTG
AGGGCTCCCGATTCTTCACGCTTCTCCCACATGGACCTTCAGGTGCGGCTTCAGAGCCGA
TGAAAACCAGCCTTGCTCCTTCCACGTCCCGCGTGCGGGTGACCACCTCGCTCACACGCC
CCGCTGTTCTCCCGAGCAAGCAGGGCTGGTGGCGGAGTCCAGGCCCACCTGAGGCGGGTG
GATGCGGTGCGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               119-232, - strand, RNAz p=0.997267

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-232, - strand, RNAz p=0.997267

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-705, gnl|bosTau2|chr5 (67279452-67278758)
               

               
               1-705, gnl|Hg17|chr22 (36411748-36412493)
               


               
               2-357, gnl|bosTau2|chr18 (8699944-8700288)
               

               
               2-357, gnl|Hg17|chr22 (36411749-36412123)
               

               
               2-357, gnl|Mm7|chr15 (79023480-79023815)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-705, gnl|bosTau2|chr5 (67279452-67278758)
               

               
               1-705, gnl|Hg17|chr22 (36411748-36412493)
               


               
               2-357, gnl|bosTau2|chr18 (8699944-8700288)
               

               
               2-357, gnl|Hg17|chr22 (36411749-36412123)
               

               
               2-357, gnl|Mm7|chr15 (79023480-79023815)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nca (0.136874)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	1-705, gnl\|bosTau2\|chr5 (67279452-67278758)
	1-705, gnl\|Hg17\|chr22 (36411748-36412493)

	2-357, gnl\|bosTau2\|chr18 (8699944-8700288)
	2-357, gnl\|Hg17\|chr22 (36411749-36412123)
	2-357, gnl\|Mm7\|chr15 (79023480-79023815)