Ss1.1-Tes1-TES01D020039.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAACAGAGAGATGGACGACCCCTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGA TCCTGCAGCTGAAGGAGAGCCGCCAGGAAGAGATGAACTCTCAGCAGGACGAGGAGGAGA TGGAAACAGACACGCGCTCGTCCCTGGGCCCGTCGGCGTCAGAGACCGAGGAGGACAGCG TGTCCGTGTCCAAAAAAGAGAAAAACCGGAAGCGTCGGAACCGAAAGAAGAAGAAAAAGC CCCAGCGGGTGCGGGGGCTGTCGTCGGAGAGCTCCGGGGACCGAGAGAAGGAGTCCAGCC GGTCCCGTGGCTCCGACTCGCCCGCGGCCGATGTTGAAATTGAGTACGTGACCGAAGAGC CTGAAATTTACGAGCCCAACTTCATCTTCTTCAAGAGGATCTTTGAGGCTTTCAAGCTCA CCGATGACGTGAAGAAGGAGAAAGAGAAGGAGCCAGAGAAGCTCGACAAACTGGAGAACT CTGCGGTGCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGCGACGATGACAGCA GCGATGACGAACAGGAGAAGAAGCCAGAAGCCCCTAAGTTGTCCAAGAAGAAGCTGCGCA GAATGAATCGCTTCACTGTGGCTGAACTCAAGCAGCTTGTGGCTCGGCCTGATGTTGTGG AGATGCATGACGTGACGGCCCAGGACCCCAAGCTCTTGGTTCACCTCAAGGCCACGCGGA ATTCTGTGCCTGTGCCCCGCCACTGGTGTTTTAAGCGCAAGTACCTGCAGGGCAAACGAG GCATCGAGAAGCCCCCCTTCGAGCTGCCAGATTTCATCAAACGCACAGGCATCCAGGAGA TGCGGGAGGCCCTGCAGGAGAAGGAGGAGCAGAAGACCATGAAGTCCAAGATGCGAGAGA AGGTCCGGCCCAAGATGGGCAAGATCGACATCGACTACCAGAAGCTGCACGACGCCTTCT TCAAGTGGCAGACCAAGCCCAAGCTGACCATCCACGGGGACCTGTACTACGAGGGGAAGG AGTTTGAGACACGGCTGAAGGAGAAGAAGCCAGGCGATTTGTCTGATGAGCTGCGGATTT CCTTGGGGATGCCAGTAGGACCAAACGCACACAAGGTCCCTCCCCCGTGGCTGATCGCCA TGCAGCGCTACGGGCCGCCCCCGTCGTACCCCAACCTGAAGATCCCGGGGCTGAACTCGC CCATCCCCGAGAGCTGTTCCTTCGGGTACCATGCTGGTGGCTGGGGCAAACCCCCAGTCG ATGAGACCGGGAAACCCCTCTATGGGGATGTGTTTGGAACCAATGCTGCTGAATTTCAGA CCAAGACTGAGGAAGAGGAGATTGATCGGACCCCTTGGGGGGAGCTGGAGCCGTCGGATG AAGAATCTTCAGAAGAAGAGGAAGAGGAGGAGAGCGATGAAGACAAGCCGGATGAGACAG GCTTCATCACCCCTGCAGACAGCGGCCTCATCACTCCCGGAGGCTTCTCGTCCGTGCCGG CAGGAATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAGATTGAGGAGGCGATGG ACGGAAGTGAGACACCGCAGCTCTTCACTGTGTTGCCGGAGAAGAGAACAGCCACCGTTG GAGGGGCCATGATGGGATCGACCCACATCTATGACATGTCCACGGTTATGAGCCGGAAGG GCCCAGCCCCCGAGCTGCAAGGTGTGGAAGTGGCCCTGGCACCCGAAGAGTTGGAGCTGG ATCCCATGGCCATGACCCAGAAGTATGAGGAGCACGTGCGGGAGCAGCAGGCCCAAGTGG AGAAAGAGGACTTCAGCGACATGGTGGCTGAGCATGCTGCCAAGCAGAAGCAAAAGAAAC GGAAAGCTCAGCCCCAGGACAGCCGTGGGGGCAGCAAGAAATATAAGGAGTTCAAATTTT AGGTCCCCTCACACGCCCGGCCCTCCTTTAGGCCCTTTGCCGGACACCTGGGCTTCGCAC ATGGATACCCAAGAGCCAGCTCTCCTGTTACTCCCCAGGGCTTGTCCTTTCAGGTTCATG TTCTTATTTTAGACCTGTTTTGTAAATAAAGCTGTTTCCCAAGGAAAGAGATGAACATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAACAGAGAGATGGACGACCCCTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGA TCCTGCAGCTGAAGGAGAGCCGCCAGGAAGAGATGAACTCTCAGCAGGACGAGGAGGAGA TGGAAACAGACACGCGCTCGTCCCTGGGCCCGTCGGCGTCAGAGACCGAGGAGGACAGCG TGTCCGTGTCCAAAAAAGAGAAAAACCGGAAGCGTCGGAACCGAAAGAAGAAGAAAAAGC CCCAGCGGGTGCGGGGGCTGTCGTCGGAGAGCTCCGGGGACCGAGAGAAGGAGTCCAGCC GGTCCCGTGGCTCCGACTCGCCCGCGGCCGATGTTGAAATTGAGTACGTGACCGAAGAGC CTGAAATTTACGAGCCCAACTTCATCTTCTTCAAGAGGATCTTTGAGGCTTTCAAGCTCA CCGATGACGTGAAGAAGGAGAAAGAGAAGGAGCCAGAGAAGCTCGACAAACTGGAGAACT CTGCGGTGCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGCGACGATGACAGCA GCGATGACGAACAGGAGAAGAAGCCAGAAGCCCCTAAGTTGTCCAAGAAGAAGCTGCGCA GAATGAATCGCTTCACTGTGGCTGAACTCAAGCAGCTTGTGGCTCGGCCTGATGTTGTGG AGATGCATGACGTGACGGCCCAGGACCCCAAGCTCTTGGTTCACCTCAAGGCCACGCGGA ATTCTGTGCCTGTGCCCCGCCACTGGTGTTTTAAGCGCAAGTACCTGCAGGGCAAACGAG GCATCGAGAAGCCCCCCTTCGAGCTGCCAGATTTCATCAAACGCACAGGCATCCAGGAGA TGCGGGAGGCCCTGCAGGAGAAGGAGGAGCAGAAGACCATGAAGTCCAAGATGCGAGAGA AGGTCCGGCCCAAGATGGGCAAGATCGACATCGACTACCAGAAGCTGCACGACGCCTTCT TCAAGTGGCAGACCAAGCCCAAGCTGACCATCCACGGGGACCTGTACTACGAGGGGAAGG AGTTTGAGACACGGCTGAAGGAGAAGAAGCCAGGCGATTTGTCTGATGAGCTGCGGATTT CCTTGGGGATGCCAGTAGGACCAAACGCACACAAGGTCCCTCCCCCGTGGCTGATCGCCA TGCAGCGCTACGGGCCGCCCCCGTCGTACCCCAACCTGAAGATCCCGGGGCTGAACTCGC CCATCCCCGAGAGCTGTTCCTTCGGGTACCATGCTGGTGGCTGGGGCAAACCCCCAGTCG ATGAGACCGGGAAACCCCTCTATGGGGATGTGTTTGGAACCAATGCTGCTGAATTTCAGA CCAAGACTGAGGAAGAGGAGATTGATCGGACCCCTTGGGGGGAGCTGGAGCCGTCGGATG AAGAATCTTCAGAAGAAGAGGAAGAGGAGGAGAGCGATGAAGACAAGCCGGATGAGACAG GCTTCATCACCCCTGCAGACAGCGGCCTCATCACTCCCGGAGGCTTCTCGTCCGTGCCGG CAGGAATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAGATTGAGGAGGCGATGG ACGGAAGTGAGACACCGCAGCTCTTCACTGTGTTGCCGGAGAAGAGAACAGCCACCGTTG GAGGGGCCATGATGGGATCGACCCACATCTATGACATGTCCACGGTTATGAGCCGGAAGG GCCCAGCCCCCGAGCTGCAAGGTGTGGAAGTGGCCCTGGCACCCGAAGAGTTGGAGCTGG ATCCCATGGCCATGACCCAGAAGTATGAGGAGCACGTGCGGGAGCAGCAGGCCCAAGTGG AGAAAGAGGACTTCAGCGACATGGTGGCTGAGCATGCTGCCAAGCAGAAGCAAAAGAAAC GGAAAGCTCAGCCCCAGGACAGCCGTGGGGGCAGCAAGAAATATAAGGAGTTCAAATTTT AGGTCCCCTCACACGCCCGGCCCTCCTTTAGGCCCTTTGCCGGACACCTGGGCTTCGCAC ATGGATACCCAAGAGCCAGCTCTCCTGTTACTCCCCAGGGCTTGTCCTTTCAGGTTCATG TTCTTATTTTAGACCTGTTTTGTAAATAAAGCTGTTTCCCAAGGAAAGAGATGAACATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 10-113, - strand, RNAz p=0.539985 | |
| 747-1462, - strand, RNAz p=0.978216 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 10-113, - strand, RNAz p=0.539985 | |
| 747-1462, - strand, RNAz p=0.978216 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 10-113, gnl|bosTau2|chr29 (38883740-38883843) | |
| 10-113, gnl|canFam2|chr18 (54233852-54233763) | |
| 10-113, gnl|danRer3|chr12 (7686956-7687044) | |
| 10-113, gnl|dasNov1|scaffold_23350 (16925-17014) | |
| 10-113, gnl|echTel1|scaffold_294645 (5300-5232) | |
| 10-113, gnl|fr1|chrUn (129712368-129712460) | |
| 10-113, gnl|hg17|chr11 (65582096-65582185) | |
| 10-113, gnl|Hg17|chr11 (65582099-65582202) | |
| 10-113, gnl|loxAfr1|scaffold_2355 (133798-133709) | |
| 10-113, gnl|mm7|chr19 (5182818-5182730) | |
| 10-113, gnl|Mm7|chr19 (5182814-5182711) | |
| 10-113, gnl|monDom2|scaffold_107 (2803709-2803620) | |
| 10-113, gnl|oryCun1|scaffold_147306 (16400-16315) | |
| 10-113, gnl|panTro1|chr9 (66833863-66833952) | |
| 10-113, gnl|rheMac2|chr14 (8385537-8385467) | |
| 10-113, gnl|rn3|chr1 (208072952-208072863) | |
| 10-113, gnl|tetNig1|chrUn_random (21890786-21890721) | |
| 231-416, gnl|bosTau2|chr29 (38884537-38884722) | |
| 231-416, gnl|Hg17|chr11 (65582907-65583092) | |
| 231-416, gnl|Mm7|chr19 (5182060-5181875) | |
| 633-864, gnl|bosTau2|chr29 (38885420-38885651) | |
| 633-864, gnl|Hg17|chr11 (65583826-65584057) | |
| 633-864, gnl|Mm7|chr19 (5181225-5180994) | |
| 1104-1211, gnl|bosTau2|chr29 (38887465-38887572) | |
| 1104-1211, gnl|Hg17|chr11 (65585938-65586045) | |
| 1104-1211, gnl|Mm7|chr19 (5178556-5178449) | |
| 1297-1462, gnl|bosTau2|chr29 (38888696-38888862) | |
| 1297-1462, gnl|Hg17|chr11 (65587423-65587589) | |
| 1297-1462, gnl|Mm7|chr19 (5174442-5174276) | |
| 1664-1850, gnl|bosTau2|chr29 (38891690-38891876) | |
| 1664-1850, gnl|canFam2|chr18 (54224169-54223972) | |
| 1664-1850, gnl|danRer3|chr12 (7717145-7717339) | |
| 1664-1850, gnl|dasNov1|scaffold_77944 (1694-1879) | |
| 1664-1850, gnl|echTel1|scaffold_59621 (4637-4834) | |
| 1664-1850, gnl|fr1|chrUn (129715259-129715457) | |
| 1664-1850, gnl|hg17|chr11 (65592191-65592388) | |
| 1664-1850, gnl|Hg17|chr11 (65592194-65592380) | |
| 1664-1850, gnl|loxAfr1|scaffold_25180 (47572-47375) | |
| 1664-1850, gnl|mm7|chr19 (5169789-5169592) | |
| 1664-1850, gnl|Mm7|chr19 (5169784-5169598) | |
| 1664-1850, gnl|monDom2|scaffold_107 (2796624-2796427) | |
| 1664-1850, gnl|oryCun1|scaffold_135440 (10560-10362) | |
| 1664-1850, gnl|panTro1|chr9 (66843958-66844155) | |
| 1664-1850, gnl|rheMac2|chr14 (8374433-8374236) | |
| 1664-1850, gnl|rn3|chr1 (208059355-208059164) | |
| 1664-1850, gnl|tetNig1|chrUn_random (21888096-21887898) | |
| 1664-1850, gnl|xenTro1|scaffold_145 (272320-272125) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-113, gnl|bosTau2|chr29 (38883740-38883843) | |
| 10-113, gnl|canFam2|chr18 (54233852-54233763) | |
| 10-113, gnl|danRer3|chr12 (7686956-7687044) | |
| 10-113, gnl|dasNov1|scaffold_23350 (16925-17014) | |
| 10-113, gnl|echTel1|scaffold_294645 (5300-5232) | |
| 10-113, gnl|fr1|chrUn (129712368-129712460) | |
| 10-113, gnl|hg17|chr11 (65582096-65582185) | |
| 10-113, gnl|Hg17|chr11 (65582099-65582202) | |
| 10-113, gnl|loxAfr1|scaffold_2355 (133798-133709) | |
| 10-113, gnl|mm7|chr19 (5182818-5182730) | |
| 10-113, gnl|Mm7|chr19 (5182814-5182711) | |
| 10-113, gnl|monDom2|scaffold_107 (2803709-2803620) | |
| 10-113, gnl|oryCun1|scaffold_147306 (16400-16315) | |
| 10-113, gnl|panTro1|chr9 (66833863-66833952) | |
| 10-113, gnl|rheMac2|chr14 (8385537-8385467) | |
| 10-113, gnl|rn3|chr1 (208072952-208072863) | |
| 10-113, gnl|tetNig1|chrUn_random (21890786-21890721) | |
| 231-416, gnl|bosTau2|chr29 (38884537-38884722) | |
| 231-416, gnl|Hg17|chr11 (65582907-65583092) | |
| 231-416, gnl|Mm7|chr19 (5182060-5181875) | |
| 633-864, gnl|bosTau2|chr29 (38885420-38885651) | |
| 633-864, gnl|Hg17|chr11 (65583826-65584057) | |
| 633-864, gnl|Mm7|chr19 (5181225-5180994) | |
| 1104-1211, gnl|bosTau2|chr29 (38887465-38887572) | |
| 1104-1211, gnl|Hg17|chr11 (65585938-65586045) | |
| 1104-1211, gnl|Mm7|chr19 (5178556-5178449) | |
| 1297-1462, gnl|bosTau2|chr29 (38888696-38888862) | |
| 1297-1462, gnl|Hg17|chr11 (65587423-65587589) | |
| 1297-1462, gnl|Mm7|chr19 (5174442-5174276) | |
| 1664-1850, gnl|bosTau2|chr29 (38891690-38891876) | |
| 1664-1850, gnl|canFam2|chr18 (54224169-54223972) | |
| 1664-1850, gnl|danRer3|chr12 (7717145-7717339) | |
| 1664-1850, gnl|dasNov1|scaffold_77944 (1694-1879) | |
| 1664-1850, gnl|echTel1|scaffold_59621 (4637-4834) | |
| 1664-1850, gnl|fr1|chrUn (129715259-129715457) | |
| 1664-1850, gnl|hg17|chr11 (65592191-65592388) | |
| 1664-1850, gnl|Hg17|chr11 (65592194-65592380) | |
| 1664-1850, gnl|loxAfr1|scaffold_25180 (47572-47375) | |
| 1664-1850, gnl|mm7|chr19 (5169789-5169592) | |
| 1664-1850, gnl|Mm7|chr19 (5169784-5169598) | |
| 1664-1850, gnl|monDom2|scaffold_107 (2796624-2796427) | |
| 1664-1850, gnl|oryCun1|scaffold_135440 (10560-10362) | |
| 1664-1850, gnl|panTro1|chr9 (66843958-66844155) | |
| 1664-1850, gnl|rheMac2|chr14 (8374433-8374236) | |
| 1664-1850, gnl|rn3|chr1 (208059355-208059164) | |
| 1664-1850, gnl|tetNig1|chrUn_random (21888096-21887898) | |
| 1664-1850, gnl|xenTro1|scaffold_145 (272320-272125) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| cbr (1.0238) | |
| cov (0.528611) | |
| amn (0.417711) | |
| ill (0.351185) | |
| nbm (0.297974) | |
| hyp (0.285673) | |
| cly (0.241284) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (1.0238) | |
| cov (0.528611) | |
| amn (0.417711) | |
| ill (0.351185) | |
| nbm (0.297974) | |
| hyp (0.285673) | |
| cly (0.241284) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) |