Ss1.1-Tes1-TES01D030007.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCGCCCAGCGGCGTCCACCTGCTCGTCCGAAGAGGTTGTCATAGGATTTTCTCTTC ACCACTCAATCATATCTACTTACACAAGCAGTCCAGCAGTCAACAAAGAAGAAATTTCTT TTTCCGGAGACAAAGAGAGATTTCACACAGTATAGTTTTGCCGGCTGCAGTTTCTTCAGC TCATCCAGTCCCTAAGCACATAAAGAAGCCAGACTATGTGACGACAGGCATTGTACCCGA CTGGGGAGACAGCATAGAAGTTAAGACTGAAGATCAGATTCAAGGGCTTCATCAGGCTTG TCAGCTGGCCCGTCATGTCCTCCTCCTGGCCGGGAAGAGTTTAAAGGTTGGCATGACAAC AGAAGAGATAGATGCTCTTGTTCATCAGGAGATCATCAGTCATGATGCCTATCCTTCACC TCTAGGCTATGGAGGTTTTCCAAAATCTGTTTGTACCTCTGTAAACAATGTGCTTTGTCA TGGTATTCCTGACAGTCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACGGT TTACTACAATGGCTACCATGGAGACACCTCTGAAACATTTTTGGTGGGCAGTGTGGATGA AGGCGGTAAAAAGTTAGTGGAGGTTGCCAGGAGGTGTAGAGATGAAGCAATTGCTGCTTG CAGAGCAGGGGCTCCCTTCTCTGTAATTGGAAACACAATCAGCCAGATAAGTCACCAGAA TGGTTTGCAAGTCTGTCCACATTTTGTGGGACATGGAATAGGCTCTTACTTTCATGGACA TCCAGAAATCTGGCATCATGCGAATGACAGCGATCTGCTCATGGAGGAGGGTATGGCGTT CACCATAGAGCCAATTATAACCGAGGGATCCCCTGAATTTAAAGTGCTGGAGGATGCATG GACCGTGGTCTCCTTGGACAATCAAAGGTCTGCCCAGTTCGAGCACACAGTTCTCATTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCGCCCAGCGGCGTCCACCTGCTCGTCCGAAGAGGTTGTCATAGGATTTTCTCTTC ACCACTCAATCATATCTACTTACACAAGCAGTCCAGCAGTCAACAAAGAAGAAATTTCTT TTTCCGGAGACAAAGAGAGATTTCACACAGTATAGTTTTGCCGGCTGCAGTTTCTTCAGC TCATCCAGTCCCTAAGCACATAAAGAAGCCAGACTATGTGACGACAGGCATTGTACCCGA CTGGGGAGACAGCATAGAAGTTAAGACTGAAGATCAGATTCAAGGGCTTCATCAGGCTTG TCAGCTGGCCCGTCATGTCCTCCTCCTGGCCGGGAAGAGTTTAAAGGTTGGCATGACAAC AGAAGAGATAGATGCTCTTGTTCATCAGGAGATCATCAGTCATGATGCCTATCCTTCACC TCTAGGCTATGGAGGTTTTCCAAAATCTGTTTGTACCTCTGTAAACAATGTGCTTTGTCA TGGTATTCCTGACAGTCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACGGT TTACTACAATGGCTACCATGGAGACACCTCTGAAACATTTTTGGTGGGCAGTGTGGATGA AGGCGGTAAAAAGTTAGTGGAGGTTGCCAGGAGGTGTAGAGATGAAGCAATTGCTGCTTG CAGAGCAGGGGCTCCCTTCTCTGTAATTGGAAACACAATCAGCCAGATAAGTCACCAGAA TGGTTTGCAAGTCTGTCCACATTTTGTGGGACATGGAATAGGCTCTTACTTTCATGGACA TCCAGAAATCTGGCATCATGCGAATGACAGCGATCTGCTCATGGAGGAGGGTATGGCGTT CACCATAGAGCCAATTATAACCGAGGGATCCCCTGAATTTAAAGTGCTGGAGGATGCATG GACCGTGGTCTCCTTGGACAATCAAAGGTCTGCCCAGTTCGAGCACACAGTTCTCATTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 378-495, - strand, RNAz p=0.535682 | |
| 538-656, + strand, RNAz p=0.977198 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 378-495, - strand, RNAz p=0.535682 | |
| 538-656, + strand, RNAz p=0.977198 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 37-196, gnl|bosTau2|chr2 (17612207-17612048) | |
| 37-196, gnl|Hg17|chr2 (172751731-172751890) | |
| 37-196, gnl|Mm7|chr2 (71350493-71350652) | |
| 345-495, gnl|bosTau2|chr2 (17608501-17608351) | |
| 345-495, gnl|Hg17|chr2 (172755837-172755987) | |
| 345-495, gnl|Mm7|chr2 (71355120-71355270) | |
| 538-702, gnl|bosTau2|chr2 (17604308-17604144) | |
| 538-702, gnl|canFam2|chr36 (19490467-19490686) | |
| 538-702, gnl|danRer3|chr1 (34082530-34082715) | |
| 538-702, gnl|dasNov1|scaffold_21027 (1736-1517) | |
| 538-702, gnl|echTel1|scaffold_318010 (75158-74939) | |
| 538-702, gnl|fr1|chrUn (7334175-7334422) | |
| 538-702, gnl|galGal2|chr7 (18583802-18583583) | |
| 538-702, gnl|hg17|chr2 (172761105-172761324) | |
| 538-702, gnl|Hg17|chr2 (172761141-172761305) | |
| 538-702, gnl|loxAfr1|scaffold_36244 (11293-11074) | |
| 538-702, gnl|mm7|chr2 (71359310-71359529) | |
| 538-702, gnl|Mm7|chr2 (71359346-71359510) | |
| 538-702, gnl|monDom2|scaffold_2 (70893923-70894135) | |
| 538-702, gnl|oryCun1|scaffold_202935 (43655-43436) | |
| 538-702, gnl|panTro1|chr13 (62405259-62405478) | |
| 538-702, gnl|rheMac2|chr12 (35729233-35729452) | |
| 538-702, gnl|rn3|chr3 (53719132-53719351) | |
| 538-702, gnl|tetNig1|chr15 (4237280-4237464) | |
| 538-702, gnl|xenTro1|scaffold_65 (1733529-1733328) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-196, gnl|bosTau2|chr2 (17612207-17612048) | |
| 37-196, gnl|Hg17|chr2 (172751731-172751890) | |
| 37-196, gnl|Mm7|chr2 (71350493-71350652) | |
| 345-495, gnl|bosTau2|chr2 (17608501-17608351) | |
| 345-495, gnl|Hg17|chr2 (172755837-172755987) | |
| 345-495, gnl|Mm7|chr2 (71355120-71355270) | |
| 538-702, gnl|bosTau2|chr2 (17604308-17604144) | |
| 538-702, gnl|canFam2|chr36 (19490467-19490686) | |
| 538-702, gnl|danRer3|chr1 (34082530-34082715) | |
| 538-702, gnl|dasNov1|scaffold_21027 (1736-1517) | |
| 538-702, gnl|echTel1|scaffold_318010 (75158-74939) | |
| 538-702, gnl|fr1|chrUn (7334175-7334422) | |
| 538-702, gnl|galGal2|chr7 (18583802-18583583) | |
| 538-702, gnl|hg17|chr2 (172761105-172761324) | |
| 538-702, gnl|Hg17|chr2 (172761141-172761305) | |
| 538-702, gnl|loxAfr1|scaffold_36244 (11293-11074) | |
| 538-702, gnl|mm7|chr2 (71359310-71359529) | |
| 538-702, gnl|Mm7|chr2 (71359346-71359510) | |
| 538-702, gnl|monDom2|scaffold_2 (70893923-70894135) | |
| 538-702, gnl|oryCun1|scaffold_202935 (43655-43436) | |
| 538-702, gnl|panTro1|chr13 (62405259-62405478) | |
| 538-702, gnl|rheMac2|chr12 (35729233-35729452) | |
| 538-702, gnl|rn3|chr3 (53719132-53719351) | |
| 538-702, gnl|tetNig1|chr15 (4237280-4237464) | |
| 538-702, gnl|xenTro1|scaffold_65 (1733529-1733328) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.114797) | |
| eje (0.0988338) |