Non-Coding RNA Search

Ss1.1-Tes1-TES01D030008.5

Sequence:


               
               GAAGCCAAAAGTATTCCTAGAAAACAGGAAATGGGAAAAGAAAGTGAAAACTGGAAACAG
GCTTCAGTATTCCCAATATTATCTCCAAAAAGCTGAAACTATTGAATCCGGAAGTGATAA
ATAGGAAGTAGACCATAGAGGACAATAATAAGGTTACACCCAGAGCAAGGAAAGCTTCGG
TGGCGAGGAAGGGAGCCGAGTGCGATGGCTTTCCCTGAGCCAAAGCCACGTGGCCCGGAG
CTGCCACAGAAAAAAGCTTCGGTGGCGAGGAAGGGAGCCGAGTGCGATGGCTTTCCCTGA
GCCAAAGCCACGTGGCCCGGAGCTGCCACAGAAACGGTTGAAGACATTGGACTGCGGGCA
GGGGGCTGTGCGAGCCGTGCGATTTAATGTGGATGGCAATTACTGTCTGACTTGCGGCAG
TGACAAGACCCTGAAACTGTGGAACCCGCTGCGGGGGACGCTACTGCGGACATACAGCGG
CCACGGCTATGAGGTGCTGGACGCGGCCGGCTCCTTTGAGGGCCAGGCCAGAATATGGGC
GCTGAGGCTGTGATCAGAGGTCGACGTTAACCTTCCCTCCTCTGCCCTCTAGCTCCTTTG
ACAACAGCAGTCTCTGTTCTGGCGGCGGGGACAAGGCCGTGGTGCTGTGGGATGTGGCAT
CAGGGCAGGTCGTGCGAAAATTTCGGGGCCATGCTGGGGTGAGTGCAAGCAAGAAGGTGG
CCTAATTGGAGAGGATGGTCATTTGCATGAAGGTGGTGACAGGGACCACCATTTGCTCAG
TTACAGCACAAGGATCCTCCCCTTCCCCAAGGGTCGTCTTACCAAGCCCTGTCCTTGTAG
TTCCCCACAAACCTTTCACCTCCCCTACCCCTAGCTTTTTCCCTTGCCTTTATCCCCATC
CTCCAAAGTCCAGCTTCTCTAAATAGCAGTTCCATTTCACAGAAGGTGAACACAGTGCAG
TTTAATGAAGAGGCCACAGTTATCCTGTCTGGTGAGTGCGGGGCCTAGGCAGGTGGGCCC
AGGGTGCTGCTTCTGTCCCCCAAACCTGATCCACCTTCATGCTGACCACACAGGCTCTAT
CGATTCCAGTGTGCGCTGCTGGGACTGCCGCTCTCGGAAACCTGAGCCAGTACAGACGCT
GGATGAAGCCAGGGATGGCATATCCAGTGTGAAGGTGTCGGACCATGAAGTCCTGGCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCCAAAAGTATTCCTAGAAAACAGGAAATGGGAAAAGAAAGTGAAAACTGGAAACAG
GCTTCAGTATTCCCAATATTATCTCCAAAAAGCTGAAACTATTGAATCCGGAAGTGATAA
ATAGGAAGTAGACCATAGAGGACAATAATAAGGTTACACCCAGAGCAAGGAAAGCTTCGG
TGGCGAGGAAGGGAGCCGAGTGCGATGGCTTTCCCTGAGCCAAAGCCACGTGGCCCGGAG
CTGCCACAGAAAAAAGCTTCGGTGGCGAGGAAGGGAGCCGAGTGCGATGGCTTTCCCTGA
GCCAAAGCCACGTGGCCCGGAGCTGCCACAGAAACGGTTGAAGACATTGGACTGCGGGCA
GGGGGCTGTGCGAGCCGTGCGATTTAATGTGGATGGCAATTACTGTCTGACTTGCGGCAG
TGACAAGACCCTGAAACTGTGGAACCCGCTGCGGGGGACGCTACTGCGGACATACAGCGG
CCACGGCTATGAGGTGCTGGACGCGGCCGGCTCCTTTGAGGGCCAGGCCAGAATATGGGC
GCTGAGGCTGTGATCAGAGGTCGACGTTAACCTTCCCTCCTCTGCCCTCTAGCTCCTTTG
ACAACAGCAGTCTCTGTTCTGGCGGCGGGGACAAGGCCGTGGTGCTGTGGGATGTGGCAT
CAGGGCAGGTCGTGCGAAAATTTCGGGGCCATGCTGGGGTGAGTGCAAGCAAGAAGGTGG
CCTAATTGGAGAGGATGGTCATTTGCATGAAGGTGGTGACAGGGACCACCATTTGCTCAG
TTACAGCACAAGGATCCTCCCCTTCCCCAAGGGTCGTCTTACCAAGCCCTGTCCTTGTAG
TTCCCCACAAACCTTTCACCTCCCCTACCCCTAGCTTTTTCCCTTGCCTTTATCCCCATC
CTCCAAAGTCCAGCTTCTCTAAATAGCAGTTCCATTTCACAGAAGGTGAACACAGTGCAG
TTTAATGAAGAGGCCACAGTTATCCTGTCTGGTGAGTGCGGGGCCTAGGCAGGTGGGCCC
AGGGTGCTGCTTCTGTCCCCCAAACCTGATCCACCTTCATGCTGACCACACAGGCTCTAT
CGATTCCAGTGTGCGCTGCTGGGACTGCCGCTCTCGGAAACCTGAGCCAGTACAGACGCT
GGATGAAGCCAGGGATGGCATATCCAGTGTGAAGGTGTCGGACCATGAAGTCCTGGCAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13542766|gb|AAH05587.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13542766|gb|AAH05587.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-252, gnl|bosTau2|chr7 (8395758-8396030)
               

               
               1-252, gnl|Hg17|chr19 (12641378-12641652)
               

               
               1-252, gnl|Mm7|chr8 (83669477-83669191)
               


               
               389-1200, gnl|bosTau2|chr7 (8396164-8396996)
               

               
               389-1200, gnl|Hg17|chr19 (12641790-12642635)
               

               
               389-1200, gnl|Mm7|chr8 (83669057-83668204)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-252, gnl|bosTau2|chr7 (8395758-8396030)
               

               
               1-252, gnl|Hg17|chr19 (12641378-12641652)
               

               
               1-252, gnl|Mm7|chr8 (83669477-83669191)
               


               
               389-1200, gnl|bosTau2|chr7 (8396164-8396996)
               

               
               389-1200, gnl|Hg17|chr19 (12641790-12642635)
               

               
               389-1200, gnl|Mm7|chr8 (83669057-83668204)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nca (0.273748)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               cty (0.10408)

	1-252, gnl\|bosTau2\|chr7 (8395758-8396030)
	1-252, gnl\|Hg17\|chr19 (12641378-12641652)
	1-252, gnl\|Mm7\|chr8 (83669477-83669191)

	389-1200, gnl\|bosTau2\|chr7 (8396164-8396996)
	389-1200, gnl\|Hg17\|chr19 (12641790-12642635)
	389-1200, gnl\|Mm7\|chr8 (83669057-83668204)

	nca (0.273748)
	fcc (0.197785)
	nco (0.161734)
	cag (0.151194)
	pla (0.133672)
	cty (0.10408)