Non-Coding RNA Search

Ss1.1-Tes1-TES01D050014.5

Sequence:


               
               CGCCCGCGGCCCGGGCTCCCGGCTCCTGCGGCCGCGCCCTGGCGGCGGCGCGCGCCCTGG
CCTGGAGACCGACTTGGAAGCCCATCTGGAGACCGAGCTGGCCCGGCAGGCATTGCGCGG
GTAACATGGCGGCCCCCGGCGAGCGGGGCCGCTTTGGCGGGAACCTCTTCTCCTTCCTGC
CCGGCGGCGCGCGCTCCGAGGTGGTGGATGACCTGGTGACGGACGCGCGCGGCCGGGGCG
CCGGGCGGAGAGATGCCGCCGCTTCAGCCGGGATGCCCTCCCAAGCCCCGGCCTCGGATT
CTCAGGTCGCCGAGGACGCCTCCCGGAGGCGGCCCTGCCGGGCCTGCGTGGACTTCAAGT
CGTGGATGCGGACGCAGCAGAAGCGGGACAGCAAGTTTAGGGAAGATTGTCCTCCAGATC
GCGAGGAACTCGGCCGCCACAGCTGGGCTGTACTCCACACCCTGGCTGCTTACTACCCCG
ACCTGCCCACCCCAGAACAGCAGCAAGATATGGCTCAGTTGGTAAATTTATTTTCCAAGT
TTTACCCATGCGAGGAGTGTGCTGAAGACATAAGGAGGAGGATATGCCGGAACCAGCCAG
ACACACGCACCCGGGCACACTTCACCCAGTGGCTGTGCCGCCTGCACAACGAGGTGAACC
GCAAGCTGGGCAAGCCGGAGTTTGACTGCTCGCAGGTGGACGAGCGCTGGCGAGACGGAT
GGAAGGACGGCTCCTGTGACTAGATGCCAGCCAGCCAGAGCATGTGCGCGGCCTGACCAG
AGCGTGTGGGGCTCATTATTAAAAGTACATCAGAGCCAGAGCCTGTCTTGTCTCAGTTGG
GTGGTCCCCAGACCCTGCCCATGGAGCCCTCTCTCAGGTTCAGAGTAGAAGTGGGGGTGC
CCCCGACGGCCTCCCCCTCAACCCAGGCCCGAGGGCGCTGAAGGAGGCCAGGGCAGCCTA
GGCTGTCCCTCCCTTTCCAGATTCGGCCTCCTGCTCACCTGACACCTGCTGCCAACTTAG
GAAGGTGACCAGCCTGGCAGGGCTCCTCTGTCTTGCCAGGCCAGGCCCCTGTCCCCCACC
GTGTAGCTAGGGACAGCTGGCATGGCTGCAGTGTCTTTAGCCCGGGGCCTGTGCGCTGCC
AGTACTTCAGGAGAGAGGCCTGGGGGCTGAGCTCTGCTGCACACCTGCCGTGCCGCATGT
GGCCTTGCTCAGCTGCACCAGGCCTGTCGAAGGCTTCTGTGGAGCTTGAGACCAAAATAA
AATGCTGGAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCGCGGCCCGGGCTCCCGGCTCCTGCGGCCGCGCCCTGGCGGCGGCGCGCGCCCTGG
CCTGGAGACCGACTTGGAAGCCCATCTGGAGACCGAGCTGGCCCGGCAGGCATTGCGCGG
GTAACATGGCGGCCCCCGGCGAGCGGGGCCGCTTTGGCGGGAACCTCTTCTCCTTCCTGC
CCGGCGGCGCGCGCTCCGAGGTGGTGGATGACCTGGTGACGGACGCGCGCGGCCGGGGCG
CCGGGCGGAGAGATGCCGCCGCTTCAGCCGGGATGCCCTCCCAAGCCCCGGCCTCGGATT
CTCAGGTCGCCGAGGACGCCTCCCGGAGGCGGCCCTGCCGGGCCTGCGTGGACTTCAAGT
CGTGGATGCGGACGCAGCAGAAGCGGGACAGCAAGTTTAGGGAAGATTGTCCTCCAGATC
GCGAGGAACTCGGCCGCCACAGCTGGGCTGTACTCCACACCCTGGCTGCTTACTACCCCG
ACCTGCCCACCCCAGAACAGCAGCAAGATATGGCTCAGTTGGTAAATTTATTTTCCAAGT
TTTACCCATGCGAGGAGTGTGCTGAAGACATAAGGAGGAGGATATGCCGGAACCAGCCAG
ACACACGCACCCGGGCACACTTCACCCAGTGGCTGTGCCGCCTGCACAACGAGGTGAACC
GCAAGCTGGGCAAGCCGGAGTTTGACTGCTCGCAGGTGGACGAGCGCTGGCGAGACGGAT
GGAAGGACGGCTCCTGTGACTAGATGCCAGCCAGCCAGAGCATGTGCGCGGCCTGACCAG
AGCGTGTGGGGCTCATTATTAAAAGTACATCAGAGCCAGAGCCTGTCTTGTCTCAGTTGG
GTGGTCCCCAGACCCTGCCCATGGAGCCCTCTCTCAGGTTCAGAGTAGAAGTGGGGGTGC
CCCCGACGGCCTCCCCCTCAACCCAGGCCCGAGGGCGCTGAAGGAGGCCAGGGCAGCCTA
GGCTGTCCCTCCCTTTCCAGATTCGGCCTCCTGCTCACCTGACACCTGCTGCCAACTTAG
GAAGGTGACCAGCCTGGCAGGGCTCCTCTGTCTTGCCAGGCCAGGCCCCTGTCCCCCACC
GTGTAGCTAGGGACAGCTGGCATGGCTGCAGTGTCTTTAGCCCGGGGCCTGTGCGCTGCC
AGTACTTCAGGAGAGAGGCCTGGGGGCTGAGCTCTGCTGCACACCTGCCGTGCCGCATGT
GGCCTTGCTCAGCTGCACCAGGCCTGTCGAAGGCTTCTGTGGAGCTTGAGACCAAAATAA
AATGCTGGAGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|45710062|gb|AAH02429.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|45710062|gb|AAH02429.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               778-878, - strand, RNAz p=0.899096
               

               
               906-1105, - strand, RNAz p=0.994946

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               778-878, - strand, RNAz p=0.899096
               

               
               906-1105, - strand, RNAz p=0.994946

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               215-383, gnl|bosTau2|chr25 (3061419-3061254)
               


               
               579-1206, gnl|bosTau2|chr25 (3059890-3059249)
               

               
               579-1206, gnl|Hg17|chr16 (1975866-1976613)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-383, gnl|bosTau2|chr25 (3061419-3061254)
               


               
               579-1206, gnl|bosTau2|chr25 (3059890-3059249)
               

               
               579-1206, gnl|Hg17|chr16 (1975866-1976613)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cte (0.58548)
               

               
               cly (0.361925)
               

               
               cag (0.302389)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               cly (0.361925)
               

               
               cag (0.302389)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               ese (0.126502)
               

               
               med (0.116252)

	778-878, - strand, RNAz p=0.899096
	906-1105, - strand, RNAz p=0.994946

	215-383, gnl\|bosTau2\|chr25 (3061419-3061254)

	579-1206, gnl\|bosTau2\|chr25 (3059890-3059249)
	579-1206, gnl\|Hg17\|chr16 (1975866-1976613)

	cte (0.58548)
	cly (0.361925)
	cag (0.302389)
	hyp (0.285673)
	lnt (0.284616)
	tes (0.207814)
	col (0.195008)
	fhi (0.169578)
	nje (0.16592)
	cli (0.152812)
	ski (0.146735)
	ese (0.126502)
	med (0.116252)