Non-Coding RNA Search

Ss1.1-Tes1-TES01D060020.5

Sequence:


               
               AGCTAGCTGTGGATGTTCACAAGGATTGTCTTCAGTCATGGCCTTGGGTTTAAGGTGCTT
CCGCTTGGTCCACCCTGCCTTTTGCAACTCCCTTGCAGCCTTGACCAGACCTGTTTCAGA
AGTTACACTGAAGACAGTGAGTGGAAGCCGAAATAACCATGGACAATACATGGCCTATCC
AGCTGTACCGGTCTGCCATTTTGCTACCAAGAAAGCCAAAGCCAAAGGGAAAGGACAGTC
CCAAACCAGAATGAATCTTAACACTGCCTTGGTTGAGGATATAATCAGCTTGGAAGAAGT
GGATGAAGAGATGAAGTCTGTGATAGAAGCACTCAAGGATAACTTCAATAAGACTGTCAA
TATAAGGACCTCACCAGGATCCCTTGATCAGATCACTGTGGTAACTGCTGATGGGAAGCT
TGCTTTAAACCAGATTGGCCAGATCTCCATGAAGTCACCACAGCTGATTTTGGTGAATAT
GGCCAGCTTCCCAGAGTGTACAGCTGCAGCTATCAAGGCTATAAGAGAAAGTGGAATGAA
TCTGAACCCAGACGTGGAAGGGACGCTAATTCGGGTACCCATTCCCAAAGTGACGAGGGA
GCACAGGGAAATGCTGGTGAAACTGGCTAAACAGAACACCAACAAGGCCAAAGAGTCTTT
ACGGAAGGTGCGGACCAACGCAATGAACAAGCTGAAGAAGTCAAAGGACAAAGCCTCGGA
GGACACCCTCAGGCTCATAGAGAAGCAGATCAGCCAAATGGCCGACGACACAGTTGCAGA
GCTGGAGAGGCATCTGGCAGTGAAAACCAAAGAACTCCTTGGCTGAAAATCCACCAGGGG
CCAGCATTGCTCCAGAGCCCAGTTCCTAGTGGATCCCATGGGTGGCAGATTGGCCTCTCT
CTACCCCATCCACACAAAGGCTGTCACCCTGCAGCTGTCAGTCTGCGTGAGGCCCAGCCT
TCCAGTGGGACATTGTTCAATCTCTTCCTGCTGTCCTCATCTGCTCTGGGCCTTCTGGCA
TGGGTGGCCCTTGGAGAATGTCTGTTGCTGACAGAGGGCCTTTACTTGACCCATCTGTCT
GGACTGTGACGTCACCAAGCTATCAGGACCATTGGCAGGCTTACACTGCTTGCTTCTCGT
CATGAGAGCCTCCTTTCAAACAGTTAGTCAGGCCCTGTCCCTATCTTTGAATTCCGATTG
GGCTAACATGGAACCTACCTGTGCCTGGATACCTTTGCTAGAGGCCCATTTTTACCAAAC
AATAAAATCTAAATAACTTGGAAAGAATAACAACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTAGCTGTGGATGTTCACAAGGATTGTCTTCAGTCATGGCCTTGGGTTTAAGGTGCTT
CCGCTTGGTCCACCCTGCCTTTTGCAACTCCCTTGCAGCCTTGACCAGACCTGTTTCAGA
AGTTACACTGAAGACAGTGAGTGGAAGCCGAAATAACCATGGACAATACATGGCCTATCC
AGCTGTACCGGTCTGCCATTTTGCTACCAAGAAAGCCAAAGCCAAAGGGAAAGGACAGTC
CCAAACCAGAATGAATCTTAACACTGCCTTGGTTGAGGATATAATCAGCTTGGAAGAAGT
GGATGAAGAGATGAAGTCTGTGATAGAAGCACTCAAGGATAACTTCAATAAGACTGTCAA
TATAAGGACCTCACCAGGATCCCTTGATCAGATCACTGTGGTAACTGCTGATGGGAAGCT
TGCTTTAAACCAGATTGGCCAGATCTCCATGAAGTCACCACAGCTGATTTTGGTGAATAT
GGCCAGCTTCCCAGAGTGTACAGCTGCAGCTATCAAGGCTATAAGAGAAAGTGGAATGAA
TCTGAACCCAGACGTGGAAGGGACGCTAATTCGGGTACCCATTCCCAAAGTGACGAGGGA
GCACAGGGAAATGCTGGTGAAACTGGCTAAACAGAACACCAACAAGGCCAAAGAGTCTTT
ACGGAAGGTGCGGACCAACGCAATGAACAAGCTGAAGAAGTCAAAGGACAAAGCCTCGGA
GGACACCCTCAGGCTCATAGAGAAGCAGATCAGCCAAATGGCCGACGACACAGTTGCAGA
GCTGGAGAGGCATCTGGCAGTGAAAACCAAAGAACTCCTTGGCTGAAAATCCACCAGGGG
CCAGCATTGCTCCAGAGCCCAGTTCCTAGTGGATCCCATGGGTGGCAGATTGGCCTCTCT
CTACCCCATCCACACAAAGGCTGTCACCCTGCAGCTGTCAGTCTGCGTGAGGCCCAGCCT
TCCAGTGGGACATTGTTCAATCTCTTCCTGCTGTCCTCATCTGCTCTGGGCCTTCTGGCA
TGGGTGGCCCTTGGAGAATGTCTGTTGCTGACAGAGGGCCTTTACTTGACCCATCTGTCT
GGACTGTGACGTCACCAAGCTATCAGGACCATTGGCAGGCTTACACTGCTTGCTTCTCGT
CATGAGAGCCTCCTTTCAAACAGTTAGTCAGGCCCTGTCCCTATCTTTGAATTCCGATTG
GGCTAACATGGAACCTACCTGTGCCTGGATACCTTTGCTAGAGGCCCATTTTTACCAAAC
AATAAAATCTAAATAACTTGGAAAGAATAACAACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55958151|emb|CAI14713.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55958151|emb|CAI14713.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               48-1160, + strand, RNAz p=0.850542
               

               
               824-933, - strand, RNAz p=0.576562

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               48-1160, + strand, RNAz p=0.850542
               

               
               824-933, - strand, RNAz p=0.576562

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC013049, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC013049, +

Aligned organism(s): 28 entry(ies)

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Aligned organism(s): 28 entry(ies)

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               9-221, gnl|bosTau2|chr11 (73868721-73868509)
               

               
               9-221, gnl|canFam2|chr9 (63649766-63649978)
               

               
               9-221, gnl|canFam2|chr9 (63650016-63649729)
               

               
               9-221, gnl|dasNov1|scaffold_33786 (153-365)
               

               
               9-221, gnl|dasNov1|scaffold_41366 (11229-11546)
               

               
               9-221, gnl|echTel1|scaffold_320271 (120569-120769)
               

               
               9-221, gnl|echTel1|scaffold_320271 (120796-120491)
               

               
               9-221, gnl|hg17|chr9 (122112663-122112986)
               

               
               9-221, gnl|Hg17|chr9 (122112696-122112908)
               

               
               9-221, gnl|hg17|chrX (121976962-121977174)
               

               
               9-221, gnl|loxAfr1|scaffold_9532 (24381-24593)
               

               
               9-221, gnl|loxAfr1|scaffold_9532 (24625-24306)
               

               
               9-221, gnl|mm7|chr1 (83523514-83523302)
               

               
               9-221, gnl|mm7|chr2 (36148726-36149022)
               

               
               9-221, gnl|Mm7|chr2 (36148756-36148968)
               

               
               9-221, gnl|monDom2|scaffold_38 (15395847-15395641)
               

               
               9-221, gnl|monDom2|scaffold_38 (15395605-15395951)
               

               
               9-221, gnl|oryCun1|scaffold_128180 (10777-10570)
               

               
               9-221, gnl|oryCun1|scaffold_212100 (137864-138186)
               

               
               9-221, gnl|panTro1|chr11 (106790975-106791298)
               

               
               9-221, gnl|panTro1|chrX (126058004-126058216)
               

               
               9-221, gnl|rheMac2|chr15 (13732781-13732993)
               

               
               9-221, gnl|rheMac2|chr15 (13733027-13732704)
               

               
               9-221, gnl|rn3|chr3 (15148186-15148485)
               

               
               9-221, gnl|rn3|chr8 (125272183-125272395)
               


               
               745-1296, gnl|bosTau2|chr11 (73821018-73820461)
               

               
               745-1296, gnl|Hg17|chr9 (122164369-122164909)
               

               
               745-1296, gnl|Mm7|chr2 (36196382-36196898)

Aligned organism(s): 28 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-221, gnl|bosTau2|chr11 (73868721-73868509)
               

               
               9-221, gnl|canFam2|chr9 (63649766-63649978)
               

               
               9-221, gnl|canFam2|chr9 (63650016-63649729)
               

               
               9-221, gnl|dasNov1|scaffold_33786 (153-365)
               

               
               9-221, gnl|dasNov1|scaffold_41366 (11229-11546)
               

               
               9-221, gnl|echTel1|scaffold_320271 (120569-120769)
               

               
               9-221, gnl|echTel1|scaffold_320271 (120796-120491)
               

               
               9-221, gnl|hg17|chr9 (122112663-122112986)
               

               
               9-221, gnl|Hg17|chr9 (122112696-122112908)
               

               
               9-221, gnl|hg17|chrX (121976962-121977174)
               

               
               9-221, gnl|loxAfr1|scaffold_9532 (24381-24593)
               

               
               9-221, gnl|loxAfr1|scaffold_9532 (24625-24306)
               

               
               9-221, gnl|mm7|chr1 (83523514-83523302)
               

               
               9-221, gnl|mm7|chr2 (36148726-36149022)
               

               
               9-221, gnl|Mm7|chr2 (36148756-36148968)
               

               
               9-221, gnl|monDom2|scaffold_38 (15395847-15395641)
               

               
               9-221, gnl|monDom2|scaffold_38 (15395605-15395951)
               

               
               9-221, gnl|oryCun1|scaffold_128180 (10777-10570)
               

               
               9-221, gnl|oryCun1|scaffold_212100 (137864-138186)
               

               
               9-221, gnl|panTro1|chr11 (106790975-106791298)
               

               
               9-221, gnl|panTro1|chrX (126058004-126058216)
               

               
               9-221, gnl|rheMac2|chr15 (13732781-13732993)
               

               
               9-221, gnl|rheMac2|chr15 (13733027-13732704)
               

               
               9-221, gnl|rn3|chr3 (15148186-15148485)
               

               
               9-221, gnl|rn3|chr8 (125272183-125272395)
               


               
               745-1296, gnl|bosTau2|chr11 (73821018-73820461)
               

               
               745-1296, gnl|Hg17|chr9 (122164369-122164909)
               

               
               745-1296, gnl|Mm7|chr2 (36196382-36196898)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hea (0.204499)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)

	48-1160, + strand, RNAz p=0.850542
	824-933, - strand, RNAz p=0.576562

	9-221, gnl\|bosTau2\|chr11 (73868721-73868509)
	9-221, gnl\|canFam2\|chr9 (63649766-63649978)
	9-221, gnl\|canFam2\|chr9 (63650016-63649729)
	9-221, gnl\|dasNov1\|scaffold_33786 (153-365)
	9-221, gnl\|dasNov1\|scaffold_41366 (11229-11546)
	9-221, gnl\|echTel1\|scaffold_320271 (120569-120769)
	9-221, gnl\|echTel1\|scaffold_320271 (120796-120491)
	9-221, gnl\|hg17\|chr9 (122112663-122112986)
	9-221, gnl\|Hg17\|chr9 (122112696-122112908)
	9-221, gnl\|hg17\|chrX (121976962-121977174)
	9-221, gnl\|loxAfr1\|scaffold_9532 (24381-24593)
	9-221, gnl\|loxAfr1\|scaffold_9532 (24625-24306)
	9-221, gnl\|mm7\|chr1 (83523514-83523302)
	9-221, gnl\|mm7\|chr2 (36148726-36149022)
	9-221, gnl\|Mm7\|chr2 (36148756-36148968)
	9-221, gnl\|monDom2\|scaffold_38 (15395847-15395641)
	9-221, gnl\|monDom2\|scaffold_38 (15395605-15395951)
	9-221, gnl\|oryCun1\|scaffold_128180 (10777-10570)
	9-221, gnl\|oryCun1\|scaffold_212100 (137864-138186)
	9-221, gnl\|panTro1\|chr11 (106790975-106791298)
	9-221, gnl\|panTro1\|chrX (126058004-126058216)
	9-221, gnl\|rheMac2\|chr15 (13732781-13732993)
	9-221, gnl\|rheMac2\|chr15 (13733027-13732704)
	9-221, gnl\|rn3\|chr3 (15148186-15148485)
	9-221, gnl\|rn3\|chr8 (125272183-125272395)

	745-1296, gnl\|bosTau2\|chr11 (73821018-73820461)
	745-1296, gnl\|Hg17\|chr9 (122164369-122164909)
	745-1296, gnl\|Mm7\|chr2 (36196382-36196898)