Non-Coding RNA Search

Ss1.1-Tes1-TES01D080019.5.5

Sequence:


               
               GATGCAGGGTCCTTCTCTCTCTCAGCTGGTCCTGGTGCTGGCAGCAATGGGGGCCCTGCT
GGAGGCTGGGACCCCCAGAGAAGAGGTCTCCAGCACCCCAGCTTTGCCCAGGGAGCCAGC
CACAGGCACCGAGGGGCTCATCTTCCACTGGGACTGGAACTGGCCGCCCCCTGGTGCCTG
GCCCCTGGGTGGCCCTCAGGACCCCCTGTGCCTAGTGACCCTGAATGGAGACCCTGGCAA
TGGGAGCAGTCCTTTTCTGTGGGTGGTGGGGACTCTAAGCAGCTATGAGCAGGCCTTCCT
GGAGGCTGTGCGGCATGCCCGCTGGGGTCCCCAAGACCTGGCCAACTTTGGGCTCTGCCC
TCCCAGCCTCAGGCAGGCTGCCCTGCCCCTTTTGCAGCAGCTGCAGGCATGGCTGGGGGA
GCCCAGGGGGCAGCGACTGGTGGTCCTGCACCTGGAGGAAGTGTCGTGGGAGCCAACACC
CTTGCTGAAGTTCCAGGAGCCCCTACCTGGAGAAGCCAGCCCCCTGGAGCTGGCGCTGTT
GGTGTTGTATCCAGGGCCCGGCCCAGAGGTCACTGTCACCGGGGCTGGGCTGCCCGGCGC
CCAGAGCCTCTGCCCGACTAGGGACTCTGGCTTCCTGGCGTTGGCGGTGCCCAGCACCGA
CCCCTTCCTGGAAACGCTCACGCGCCTTGTGCGTGCGCTGCGGGGACCCCCAGCCAGAAT
CCCGCCGCCGAGTCTGGCCCTGGACCCGGGCGCGCTGGCCGGGTTCCCGCAGGGCCAGGT
CAACTTGTCGGACCCTGCGGCGCTGGAGCGCCTGCTCGACGGCGAGGAGCCACTGCTGCT
GCTGCTGCCGCCGCCCACCGCGGCCACCGCTGGCGTCCCCGCGCCGCTGCAGGGTCCGGT
AACCGCGATGTGGGCCTCAAGCCTAGCGCGCCGAGTGGCCACCGAACTTCAGTCGGCAGC
AGCCGAGCTGCGCGGCCTCCCCGGGCTGCCGCCCACCGCCACCCCGTTGCTGGCACGCCT
ATTGGCACTGTGCCCAGGGGACAGAGGGGACCCCGGCGGCCCGCTGCGCGCAGTGTTGCT
GCTCAAGGCGCTTCAGGGCCTGCGCACCGAGTGGCGCTGGAGGGAACGGAGCGGGCCGGC
ACGGGCGCAGCGCAGCGCTGGGACCGCGGTCTCCAATGGGCCCTGTGCGCTGCGCGAACT
TAGCGTGGACCTGCGCGCCGAGCGCTCGGTGCTCATCCCCGAGACATATCAAGCCAACAA
CTGCCAAGGCACCTGCGGCTGGCCGCAATCGGACCGCAACCCGCGGTATGGCAACCACGT
GGTGCTTCTGCTTAAGATGCAGGCCCGCGGCGCCGCCCTGGCCCGCCCGCCCTGCTGCGT
GCCCACAGCCTACGCAGGCAAGCTCCTCATCAGCCTGTCTGAGGAGCGCATCAGTGCCCA
CCACGTGCCCAACATGGTGGCCACCGAGTGCGGCTGCCGGTGACCCCGCGCCATGCCCCG
AGTGGCTCCCCGGCCCATATTTATTCAAACCCGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGCAGGGTCCTTCTCTCTCTCAGCTGGTCCTGGTGCTGGCAGCAATGGGGGCCCTGCT
GGAGGCTGGGACCCCCAGAGAAGAGGTCTCCAGCACCCCAGCTTTGCCCAGGGAGCCAGC
CACAGGCACCGAGGGGCTCATCTTCCACTGGGACTGGAACTGGCCGCCCCCTGGTGCCTG
GCCCCTGGGTGGCCCTCAGGACCCCCTGTGCCTAGTGACCCTGAATGGAGACCCTGGCAA
TGGGAGCAGTCCTTTTCTGTGGGTGGTGGGGACTCTAAGCAGCTATGAGCAGGCCTTCCT
GGAGGCTGTGCGGCATGCCCGCTGGGGTCCCCAAGACCTGGCCAACTTTGGGCTCTGCCC
TCCCAGCCTCAGGCAGGCTGCCCTGCCCCTTTTGCAGCAGCTGCAGGCATGGCTGGGGGA
GCCCAGGGGGCAGCGACTGGTGGTCCTGCACCTGGAGGAAGTGTCGTGGGAGCCAACACC
CTTGCTGAAGTTCCAGGAGCCCCTACCTGGAGAAGCCAGCCCCCTGGAGCTGGCGCTGTT
GGTGTTGTATCCAGGGCCCGGCCCAGAGGTCACTGTCACCGGGGCTGGGCTGCCCGGCGC
CCAGAGCCTCTGCCCGACTAGGGACTCTGGCTTCCTGGCGTTGGCGGTGCCCAGCACCGA
CCCCTTCCTGGAAACGCTCACGCGCCTTGTGCGTGCGCTGCGGGGACCCCCAGCCAGAAT
CCCGCCGCCGAGTCTGGCCCTGGACCCGGGCGCGCTGGCCGGGTTCCCGCAGGGCCAGGT
CAACTTGTCGGACCCTGCGGCGCTGGAGCGCCTGCTCGACGGCGAGGAGCCACTGCTGCT
GCTGCTGCCGCCGCCCACCGCGGCCACCGCTGGCGTCCCCGCGCCGCTGCAGGGTCCGGT
AACCGCGATGTGGGCCTCAAGCCTAGCGCGCCGAGTGGCCACCGAACTTCAGTCGGCAGC
AGCCGAGCTGCGCGGCCTCCCCGGGCTGCCGCCCACCGCCACCCCGTTGCTGGCACGCCT
ATTGGCACTGTGCCCAGGGGACAGAGGGGACCCCGGCGGCCCGCTGCGCGCAGTGTTGCT
GCTCAAGGCGCTTCAGGGCCTGCGCACCGAGTGGCGCTGGAGGGAACGGAGCGGGCCGGC
ACGGGCGCAGCGCAGCGCTGGGACCGCGGTCTCCAATGGGCCCTGTGCGCTGCGCGAACT
TAGCGTGGACCTGCGCGCCGAGCGCTCGGTGCTCATCCCCGAGACATATCAAGCCAACAA
CTGCCAAGGCACCTGCGGCTGGCCGCAATCGGACCGCAACCCGCGGTATGGCAACCACGT
GGTGCTTCTGCTTAAGATGCAGGCCCGCGGCGCCGCCCTGGCCCGCCCGCCCTGCTGCGT
GCCCACAGCCTACGCAGGCAAGCTCCTCATCAGCCTGTCTGAGGAGCGCATCAGTGCCCA
CCACGTGCCCAACATGGTGGCCACCGAGTGCGGCTGCCGGTGACCCCGCGCCATGCCCCG
AGTGGCTCCCCGGCCCATATTTATTCAAACCCGATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               O18761_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               O18761_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.583064
               

               
               1368-1487, - strand, RNAz p=0.625849

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.583064
               

               
               1368-1487, - strand, RNAz p=0.625849

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-461, gnl|bosTau2|chr7 (18180550-18181004)
               

               
               1-461, gnl|Hg17|chr19 (2200331-2200743)
               

               
               1-461, gnl|Mm7|chr10 (80594864-80595267)
               


               
               649-1532, gnl|bosTau2|chr7 (18182497-18183377)
               

               
               649-1532, gnl|Hg17|chr19 (2202125-2203035)
               

               
               649-1532, gnl|Mm7|chr10 (80596443-80597306)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-461, gnl|bosTau2|chr7 (18180550-18181004)
               

               
               1-461, gnl|Hg17|chr19 (2200331-2200743)
               

               
               1-461, gnl|Mm7|chr10 (80594864-80595267)
               


               
               649-1532, gnl|bosTau2|chr7 (18182497-18183377)
               

               
               649-1532, gnl|Hg17|chr19 (2202125-2203035)
               

               
               649-1532, gnl|Mm7|chr10 (80596443-80597306)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               cty (0.10408)

	80-199, - strand, RNAz p=0.583064
	1368-1487, - strand, RNAz p=0.625849

	1-461, gnl\|bosTau2\|chr7 (18180550-18181004)
	1-461, gnl\|Hg17\|chr19 (2200331-2200743)
	1-461, gnl\|Mm7\|chr10 (80594864-80595267)

	649-1532, gnl\|bosTau2\|chr7 (18182497-18183377)
	649-1532, gnl\|Hg17\|chr19 (2202125-2203035)
	649-1532, gnl\|Mm7\|chr10 (80596443-80597306)