Ss1.1-Tes1-TES01D090010.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGGTTCTGCAAGGGGTGGGCACGGGACTCGCATCTCCGCCTGGAACTACCCTAGTCCC TGCCTTTGAGGCCAGACGGGCGTGGGAATAGGGGCCGCCCAAAGGTGGGCCGGGGTGGGA GGAAGCGGCCTGGGAGTCGGCGCAAGGCCTGCTTTAAGCCCCCTGGCCTCAGCTTCTTGG AGTGCCCTGCCAGGGCGCGTTTTCTCTAGGTTCCGAGACCTGGGCCTGAGCGCTCCACGT TGGCATTTCAGGGGGTCTTCTGGATTGAACCCGGCCCCCGACCCCGCCATTCCTTTCCTT ACAGCATGATCCGCTGGACCTCCAGCACCTTGCCTGAAAAAGACCACTTAACTTGGACGA ACCCTTTGGCAGCCTCAGACCGTCCTTGAAGAGAATGACTGAAACACTATGGGCCATGCA CTGTGTGTCTGCTCTCGGGGAACTGTCATCATTGACAATAAGCGCTACCTCTTCATCCAG AAACTGGGGGAGGGTGGGTTCAGCTATGTGGACCTAGTGGAGGGGTTACGTGATGGACAG TTCTACGCCCTGAAGCGAATCCTGTGTCATGAGCAGCAGGACCGGGAGGAGGCCCAACGA GAAGCAGACATGCACCGCCTCTTCCATCACCCCAACATCCTTCGCCTTGTGGCTTATTGT CTGAGGGAGCGAGGCACTAAACATGAGGCCTGGCTGCTGCTGCCCTTCTTCAAGAGAGGC ACGCTGTGGAATGAGATAGAAAAGCTGAAAGACAAAGGCAACTTCCTAACTGAAGAGCAA ATCCTTCGGCTGTTGCTGGGTATCTGCAGAGGCCTTGAGGCCATTCATGCCAAGGGTTAT GCCCACAGGGACCTGAAGCCCACAAACATCTTGCTTGGAGATGAGGGGCAGCCGGTTTTA ATGGACTTGGGTTCCATGAATCAAGCGTGCATCCACGTGGAGGGCTCCCGCCAGGCTCTG GCCCTGCAGGACTGGGCAGCCCAGCGGTGCACCATCTCCTACCGAGCCCCGGAGCTCTTT TCTGTGCAGAGCCACTGTGTCATCGACGAGCGGACTGATGTCTGGTCCCTAGGATGCGTG CTCTATGCCATGATGTTCGGGGAGGGCCCTTATGACATGGTGTTCCAGAAGGGTGACAGC GTGGCCCTTGCTGTGCAGAACCAGCTCAGCGTCCCGCAGAGCCCCAGGCATTCCTCAGCT TTGCGGCAGCTGCTGACCATGATGATGACCGTGGACCCCCAGCAGCGCCCTCACATTCCT TTCCTCCTGAGTCAGTTGGAGGCACTGCAGCCTCCTGCTCAGGGCCAGCACACTACCCAA ATCTGAACAAACCAGTGGCCGCGTTGAGAAGGTGGCCTCTGTGCCTTGGGGAGAAACTTC CATCCCTCAGTGGAGTCTCCATCCTTTCTATCCAGGACCCCTCTCTTGTGGTTGGGGCAG CCGGGGGTGGGGACCGTCAGCTCAGTCTTCTGCCTCTGTCTATGCTCTGTTACCCCAAAG AGCAACACCTGGACAGGGGGCTTGACTGAGTGGGGGTGGATAAGGGTCGGGGCTGGGGTA AGGGAAACTGATAGAATCTGGTAAAGGCTCTGCAGGTCTGCTGAGCTTATATCATGATAT GCCTCCAAATCTGGGTGCAGGAGAATGTATCAATAGAAGAATAAAGTAAAAGCAGCCTGA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGGTTCTGCAAGGGGTGGGCACGGGACTCGCATCTCCGCCTGGAACTACCCTAGTCCC TGCCTTTGAGGCCAGACGGGCGTGGGAATAGGGGCCGCCCAAAGGTGGGCCGGGGTGGGA GGAAGCGGCCTGGGAGTCGGCGCAAGGCCTGCTTTAAGCCCCCTGGCCTCAGCTTCTTGG AGTGCCCTGCCAGGGCGCGTTTTCTCTAGGTTCCGAGACCTGGGCCTGAGCGCTCCACGT TGGCATTTCAGGGGGTCTTCTGGATTGAACCCGGCCCCCGACCCCGCCATTCCTTTCCTT ACAGCATGATCCGCTGGACCTCCAGCACCTTGCCTGAAAAAGACCACTTAACTTGGACGA ACCCTTTGGCAGCCTCAGACCGTCCTTGAAGAGAATGACTGAAACACTATGGGCCATGCA CTGTGTGTCTGCTCTCGGGGAACTGTCATCATTGACAATAAGCGCTACCTCTTCATCCAG AAACTGGGGGAGGGTGGGTTCAGCTATGTGGACCTAGTGGAGGGGTTACGTGATGGACAG TTCTACGCCCTGAAGCGAATCCTGTGTCATGAGCAGCAGGACCGGGAGGAGGCCCAACGA GAAGCAGACATGCACCGCCTCTTCCATCACCCCAACATCCTTCGCCTTGTGGCTTATTGT CTGAGGGAGCGAGGCACTAAACATGAGGCCTGGCTGCTGCTGCCCTTCTTCAAGAGAGGC ACGCTGTGGAATGAGATAGAAAAGCTGAAAGACAAAGGCAACTTCCTAACTGAAGAGCAA ATCCTTCGGCTGTTGCTGGGTATCTGCAGAGGCCTTGAGGCCATTCATGCCAAGGGTTAT GCCCACAGGGACCTGAAGCCCACAAACATCTTGCTTGGAGATGAGGGGCAGCCGGTTTTA ATGGACTTGGGTTCCATGAATCAAGCGTGCATCCACGTGGAGGGCTCCCGCCAGGCTCTG GCCCTGCAGGACTGGGCAGCCCAGCGGTGCACCATCTCCTACCGAGCCCCGGAGCTCTTT TCTGTGCAGAGCCACTGTGTCATCGACGAGCGGACTGATGTCTGGTCCCTAGGATGCGTG CTCTATGCCATGATGTTCGGGGAGGGCCCTTATGACATGGTGTTCCAGAAGGGTGACAGC GTGGCCCTTGCTGTGCAGAACCAGCTCAGCGTCCCGCAGAGCCCCAGGCATTCCTCAGCT TTGCGGCAGCTGCTGACCATGATGATGACCGTGGACCCCCAGCAGCGCCCTCACATTCCT TTCCTCCTGAGTCAGTTGGAGGCACTGCAGCCTCCTGCTCAGGGCCAGCACACTACCCAA ATCTGAACAAACCAGTGGCCGCGTTGAGAAGGTGGCCTCTGTGCCTTGGGGAGAAACTTC CATCCCTCAGTGGAGTCTCCATCCTTTCTATCCAGGACCCCTCTCTTGTGGTTGGGGCAG CCGGGGGTGGGGACCGTCAGCTCAGTCTTCTGCCTCTGTCTATGCTCTGTTACCCCAAAG AGCAACACCTGGACAGGGGGCTTGACTGAGTGGGGGTGGATAAGGGTCGGGGCTGGGGTA AGGGAAACTGATAGAATCTGGTAAAGGCTCTGCAGGTCTGCTGAGCTTATATCATGATAT GCCTCCAAATCTGGGTGCAGGAGAATGTATCAATAGAAGAATAAAGTAAAAGCAGCCTGA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 3-494, gnl|bosTau2|chr2 (65186834-65187335) | |
| 3-494, gnl|Hg17|chr2 (219935805-219936312) | |
| 3-494, gnl|Mm7|chr1 (75433774-75434250) | |
| 713-849, gnl|bosTau2|chr2 (65188351-65188487) | |
| 713-849, gnl|canFam2|chr37 (28795346-28795493) | |
| 713-849, gnl|danRer3|chr1 (715837-715692) | |
| 713-849, gnl|dasNov1|scaffold_7517 (51854-52001) | |
| 713-849, gnl|echTel1|scaffold_308242 (127217-127364) | |
| 713-849, gnl|fr1|chrUn (130305511-130305651) | |
| 713-849, gnl|galGal2|chr7 (23001025-23000887) | |
| 713-849, gnl|hg17|chr2 (219937331-219937478) | |
| 713-849, gnl|Hg17|chr2 (219937338-219937474) | |
| 713-849, gnl|loxAfr1|scaffold_44791 (24379-24526) | |
| 713-849, gnl|mm7|chr1 (75435427-75435574) | |
| 713-849, gnl|Mm7|chr1 (75435434-75435570) | |
| 713-849, gnl|monDom2|scaffold_39 (1312965-1312818) | |
| 713-849, gnl|panTro1|chr13 (110100264-110100411) | |
| 713-849, gnl|rheMac2|chr12 (83102342-83102489) | |
| 713-849, gnl|rn3|chr9 (74640484-74640631) | |
| 713-849, gnl|tetNig1|chr5 (9464802-9464664) | |
| 713-849, gnl|xenTro1|scaffold_31 (3009430-3009282) | |
| 1185-1679, gnl|bosTau2|chr2 (65189629-65190115) | |
| 1185-1679, gnl|Hg17|chr2 (219938645-219939127) | |
| 1185-1679, gnl|Mm7|chr1 (75436647-75437076) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-494, gnl|bosTau2|chr2 (65186834-65187335) | |
| 3-494, gnl|Hg17|chr2 (219935805-219936312) | |
| 3-494, gnl|Mm7|chr1 (75433774-75434250) | |
| 713-849, gnl|bosTau2|chr2 (65188351-65188487) | |
| 713-849, gnl|canFam2|chr37 (28795346-28795493) | |
| 713-849, gnl|danRer3|chr1 (715837-715692) | |
| 713-849, gnl|dasNov1|scaffold_7517 (51854-52001) | |
| 713-849, gnl|echTel1|scaffold_308242 (127217-127364) | |
| 713-849, gnl|fr1|chrUn (130305511-130305651) | |
| 713-849, gnl|galGal2|chr7 (23001025-23000887) | |
| 713-849, gnl|hg17|chr2 (219937331-219937478) | |
| 713-849, gnl|Hg17|chr2 (219937338-219937474) | |
| 713-849, gnl|loxAfr1|scaffold_44791 (24379-24526) | |
| 713-849, gnl|mm7|chr1 (75435427-75435574) | |
| 713-849, gnl|Mm7|chr1 (75435434-75435570) | |
| 713-849, gnl|monDom2|scaffold_39 (1312965-1312818) | |
| 713-849, gnl|panTro1|chr13 (110100264-110100411) | |
| 713-849, gnl|rheMac2|chr12 (83102342-83102489) | |
| 713-849, gnl|rn3|chr9 (74640484-74640631) | |
| 713-849, gnl|tetNig1|chr5 (9464802-9464664) | |
| 713-849, gnl|xenTro1|scaffold_31 (3009430-3009282) | |
| 1185-1679, gnl|bosTau2|chr2 (65189629-65190115) | |
| 1185-1679, gnl|Hg17|chr2 (219938645-219939127) | |
| 1185-1679, gnl|Mm7|chr1 (75436647-75437076) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| nbm (0.198649) | |
| duo (0.172801) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.198649) | |
| duo (0.172801) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |