Ss1.1-Tes1-TES01D090013.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATCCCAGAGGGGGCGGGGCTGAAGCTACGGGAGCGGGAGGGGGGTAAGAAAAGGGAGT TCCAACCTGTGGAAACTTGGGGGTCCCCGAGGTCGGCTCCTTGTCCTCGACGGTGGATGG TGTCAGGGATAGAGCCTCTGGCGGCTCGTGGGGGGCGGTTAGGGGTCCACAGGGTGAGGG CAGAGAGAAGTGTCAAGAGAGTGAGTGGGGTACAGGAGTTCCAAACTTAGAATCTCGAGG CCCTCTGGGCTCCCGCGCCGGGGAGAGGGAGCTCGGGCCGCCATGCGGGACAGGACCCAC GAACTGAGACAGGGAGATGACAGCTCTGACGATGAGGACAAGGAGAGGGTCGCGCTGGTG GTACACCCGGGCACGGCACGGCTGGGCAGCCCAGACGATGAGTTCTTCCAGAAGGTCCGG ACAATTCGGCAGACTATTGTCAAGCTGGAGAATAAGGTCCGAGAGTTGGAGAAGCAGCAG GTCACCATCCTGGCCACGCCCCTTCCCGAGGAAAGCATGAAGCAGGACCTGCAGAACCTG CGTGACGAGATCAAACAGCTGGGGAGGGACATCCGCGCAGAGCTCAAGGCCATAGAGCCC CAGAAGGAGGAAGCCGATGAGAATTATAACTCGGTCAACACAAGAATGAGAAAAACCCAG CATGGGGTCCTGTCCCAGCAATTCGTGGAGCTCATCAACAAGTGCAACTCCATGCAGTCC GAGTACCGGGAGAAGAACGTGGAGCGGATCCGGAGGCAGCTGAAGATCACAAATGCTGGC ATGGTGTCTGACGAGGAGCTGGAGCAGATGCTGGACAGCGGGCAGAGCGAGGTGTTTGTG TCCAACATACTGAAGGACACACAGGTGACTCGACAGGCTCTAAATGAGATCTCGGCCCGG CACAGCGAGATCCAGCAGCTCGAGCGCAGTATCCGTGAACTTCATGAGATCTTCACTTTT CTGGCTACGGAGGTGGAGATGCAGGGGGAGATGATCAACCGAATCGAGAAGAACATTCTG AGCTCAGCAGACTATGTGGAACGTGGGCAGGAACACGTCAAGATGGCCCTGGAGAACCAG AAGAAGGCAAGGAAGAAGAAAGTCTTTATCGCCATCTGTTTGTCCGTCACTCTCCTTATC CTGGTGGTCATCATTAGCGTCTCCATTCTGGTGTGACAGCATCGTGGATTCTCGGCGCTA AGAGCACCAGGGACCCAGGGGCTGCCTTCCCTCCCCGAAGCCAGGGGTGGGCAGGACAGA GCCTCCAGCCCGACCCCTTCCTCACACTGGCCAGAGGGGCAGACGGTTCTTCCAGGGCCG GCAGCCACTCATCCATGGGGCCTCCCCCCCTTGGGCCACCATGCCTGGGGGCAGGCCTGC CGTGTCCTCTTTGGCTGGGACCCGTGGTTTTGTAAGAAATTAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATCCCAGAGGGGGCGGGGCTGAAGCTACGGGAGCGGGAGGGGGGTAAGAAAAGGGAGT TCCAACCTGTGGAAACTTGGGGGTCCCCGAGGTCGGCTCCTTGTCCTCGACGGTGGATGG TGTCAGGGATAGAGCCTCTGGCGGCTCGTGGGGGGCGGTTAGGGGTCCACAGGGTGAGGG CAGAGAGAAGTGTCAAGAGAGTGAGTGGGGTACAGGAGTTCCAAACTTAGAATCTCGAGG CCCTCTGGGCTCCCGCGCCGGGGAGAGGGAGCTCGGGCCGCCATGCGGGACAGGACCCAC GAACTGAGACAGGGAGATGACAGCTCTGACGATGAGGACAAGGAGAGGGTCGCGCTGGTG GTACACCCGGGCACGGCACGGCTGGGCAGCCCAGACGATGAGTTCTTCCAGAAGGTCCGG ACAATTCGGCAGACTATTGTCAAGCTGGAGAATAAGGTCCGAGAGTTGGAGAAGCAGCAG GTCACCATCCTGGCCACGCCCCTTCCCGAGGAAAGCATGAAGCAGGACCTGCAGAACCTG CGTGACGAGATCAAACAGCTGGGGAGGGACATCCGCGCAGAGCTCAAGGCCATAGAGCCC CAGAAGGAGGAAGCCGATGAGAATTATAACTCGGTCAACACAAGAATGAGAAAAACCCAG CATGGGGTCCTGTCCCAGCAATTCGTGGAGCTCATCAACAAGTGCAACTCCATGCAGTCC GAGTACCGGGAGAAGAACGTGGAGCGGATCCGGAGGCAGCTGAAGATCACAAATGCTGGC ATGGTGTCTGACGAGGAGCTGGAGCAGATGCTGGACAGCGGGCAGAGCGAGGTGTTTGTG TCCAACATACTGAAGGACACACAGGTGACTCGACAGGCTCTAAATGAGATCTCGGCCCGG CACAGCGAGATCCAGCAGCTCGAGCGCAGTATCCGTGAACTTCATGAGATCTTCACTTTT CTGGCTACGGAGGTGGAGATGCAGGGGGAGATGATCAACCGAATCGAGAAGAACATTCTG AGCTCAGCAGACTATGTGGAACGTGGGCAGGAACACGTCAAGATGGCCCTGGAGAACCAG AAGAAGGCAAGGAAGAAGAAAGTCTTTATCGCCATCTGTTTGTCCGTCACTCTCCTTATC CTGGTGGTCATCATTAGCGTCTCCATTCTGGTGTGACAGCATCGTGGATTCTCGGCGCTA AGAGCACCAGGGACCCAGGGGCTGCCTTCCCTCCCCGAAGCCAGGGGTGGGCAGGACAGA GCCTCCAGCCCGACCCCTTCCTCACACTGGCCAGAGGGGCAGACGGTTCTTCCAGGGCCG GCAGCCACTCATCCATGGGGCCTCCCCCCCTTGGGCCACCATGCCTGGGGGCAGGCCTGC CGTGTCCTCTTTGGCTGGGACCCGTGGTTTTGTAAGAAATTAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 39-153, + strand, RNAz p=0.662549 | |
| 1276-1428, + strand, RNAz p=0.858323 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 39-153, + strand, RNAz p=0.662549 | |
| 1276-1428, + strand, RNAz p=0.858323 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_004604, + | |
| 3' of NM_004604, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-317, gnl|bosTau2|chr25 (22920969-22921290) | |
| 1-317, gnl|Hg17|chr16 (30952361-30952663) | |
| 1-317, gnl|Mm7|chr7 (123938332-123938632) | |
| 413-515, gnl|bosTau2|chr25 (22921685-22921787) | |
| 413-515, gnl|canFam2|chr6 (20199395-20199264) | |
| 413-515, gnl|echTel1|scaffold_300498 (40631-40761) | |
| 413-515, gnl|fr1|chrUn (238877265-238877150) | |
| 413-515, gnl|hg17|chr16 (30953033-30953164) | |
| 413-515, gnl|Hg17|chr16 (30953046-30953148) | |
| 413-515, gnl|loxAfr1|scaffold_41618 (2735-2604) | |
| 413-515, gnl|mm7|chr7 (123938988-123939119) | |
| 413-515, gnl|Mm7|chr7 (123939001-123939103) | |
| 413-515, gnl|monDom2|scaffold_17 (9060411-9060536) | |
| 413-515, gnl|oryCun1|scaffold_215262 (7867-7998) | |
| 413-515, gnl|panTro1|chr18 (31745358-31745490) | |
| 413-515, gnl|rheMac2|chr20 (29091612-29091487) | |
| 413-515, gnl|rn3|chr1 (187276149-187276280) | |
| 413-515, gnl|tetNig1|chrUn_random (46112073-46111989) | |
| 847-988, gnl|bosTau2|chr25 (22924880-22925021) | |
| 847-988, gnl|canFam2|chr6 (20196449-20196293) | |
| 847-988, gnl|danRer3|chr19 (959154-959012) | |
| 847-988, gnl|dasNov1|scaffold_90008 (4573-4413) | |
| 847-988, gnl|echTel1|scaffold_300498 (44032-44192) | |
| 847-988, gnl|fr1|chrUn (238873920-238873766) | |
| 847-988, gnl|hg17|chr16 (30957325-30957485) | |
| 847-988, gnl|Hg17|chr16 (30957332-30957473) | |
| 847-988, gnl|loxAfr1|scaffold_204344 (903-1046) | |
| 847-988, gnl|mm7|chr7 (123943039-123943197) | |
| 847-988, gnl|Mm7|chr7 (123943046-123943187) | |
| 847-988, gnl|monDom2|scaffold_17 (9062972-9063135) | |
| 847-988, gnl|oryCun1|scaffold_215262 (10559-10707) | |
| 847-988, gnl|panTro1|chr18 (31749632-31749792) | |
| 847-988, gnl|rheMac2|chr3 (51238133-51237975) | |
| 847-988, gnl|rn3|chr1 (187281059-187281217) | |
| 847-988, gnl|tetNig1|chrUn_random (46110229-46110072) | |
| 1094-1195, gnl|bosTau2|chr25 (22926132-22926233) | |
| 1094-1195, gnl|canFam2|chr6 (20195224-20195104) | |
| 1094-1195, gnl|dasNov1|scaffold_90008 (3357-3256) | |
| 1094-1195, gnl|echTel1|scaffold_300498 (45474-45581) | |
| 1094-1195, gnl|fr1|chrUn (238873503-238873329) | |
| 1094-1195, gnl|hg17|chr16 (30958518-30958618) | |
| 1094-1195, gnl|Hg17|chr16 (30958543-30958641) | |
| 1094-1195, gnl|mm7|chr7 (123945100-123945203) | |
| 1094-1195, gnl|Mm7|chr7 (123945125-123945226) | |
| 1094-1195, gnl|monDom2|scaffold_17 (9065349-9065453) | |
| 1094-1195, gnl|oryCun1|scaffold_215262 (12071-12175) | |
| 1094-1195, gnl|panTro1|chr18 (31750827-31750927) | |
| 1094-1195, gnl|rheMac2|chr20 (29131892-29131992) | |
| 1094-1195, gnl|rn3|chr1 (187282575-187282678) | |
| 1094-1195, gnl|tetNig1|chrUn_random (46109866-46109762) | |
| 1198-1428, gnl|bosTau2|chr25 (22926328-22926563) | |
| 1198-1428, gnl|Hg17|chr16 (30958737-30958972) | |
| 1198-1428, gnl|Mm7|chr7 (123945312-123945527) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-317, gnl|bosTau2|chr25 (22920969-22921290) | |
| 1-317, gnl|Hg17|chr16 (30952361-30952663) | |
| 1-317, gnl|Mm7|chr7 (123938332-123938632) | |
| 413-515, gnl|bosTau2|chr25 (22921685-22921787) | |
| 413-515, gnl|canFam2|chr6 (20199395-20199264) | |
| 413-515, gnl|echTel1|scaffold_300498 (40631-40761) | |
| 413-515, gnl|fr1|chrUn (238877265-238877150) | |
| 413-515, gnl|hg17|chr16 (30953033-30953164) | |
| 413-515, gnl|Hg17|chr16 (30953046-30953148) | |
| 413-515, gnl|loxAfr1|scaffold_41618 (2735-2604) | |
| 413-515, gnl|mm7|chr7 (123938988-123939119) | |
| 413-515, gnl|Mm7|chr7 (123939001-123939103) | |
| 413-515, gnl|monDom2|scaffold_17 (9060411-9060536) | |
| 413-515, gnl|oryCun1|scaffold_215262 (7867-7998) | |
| 413-515, gnl|panTro1|chr18 (31745358-31745490) | |
| 413-515, gnl|rheMac2|chr20 (29091612-29091487) | |
| 413-515, gnl|rn3|chr1 (187276149-187276280) | |
| 413-515, gnl|tetNig1|chrUn_random (46112073-46111989) | |
| 847-988, gnl|bosTau2|chr25 (22924880-22925021) | |
| 847-988, gnl|canFam2|chr6 (20196449-20196293) | |
| 847-988, gnl|danRer3|chr19 (959154-959012) | |
| 847-988, gnl|dasNov1|scaffold_90008 (4573-4413) | |
| 847-988, gnl|echTel1|scaffold_300498 (44032-44192) | |
| 847-988, gnl|fr1|chrUn (238873920-238873766) | |
| 847-988, gnl|hg17|chr16 (30957325-30957485) | |
| 847-988, gnl|Hg17|chr16 (30957332-30957473) | |
| 847-988, gnl|loxAfr1|scaffold_204344 (903-1046) | |
| 847-988, gnl|mm7|chr7 (123943039-123943197) | |
| 847-988, gnl|Mm7|chr7 (123943046-123943187) | |
| 847-988, gnl|monDom2|scaffold_17 (9062972-9063135) | |
| 847-988, gnl|oryCun1|scaffold_215262 (10559-10707) | |
| 847-988, gnl|panTro1|chr18 (31749632-31749792) | |
| 847-988, gnl|rheMac2|chr3 (51238133-51237975) | |
| 847-988, gnl|rn3|chr1 (187281059-187281217) | |
| 847-988, gnl|tetNig1|chrUn_random (46110229-46110072) | |
| 1094-1195, gnl|bosTau2|chr25 (22926132-22926233) | |
| 1094-1195, gnl|canFam2|chr6 (20195224-20195104) | |
| 1094-1195, gnl|dasNov1|scaffold_90008 (3357-3256) | |
| 1094-1195, gnl|echTel1|scaffold_300498 (45474-45581) | |
| 1094-1195, gnl|fr1|chrUn (238873503-238873329) | |
| 1094-1195, gnl|hg17|chr16 (30958518-30958618) | |
| 1094-1195, gnl|Hg17|chr16 (30958543-30958641) | |
| 1094-1195, gnl|mm7|chr7 (123945100-123945203) | |
| 1094-1195, gnl|Mm7|chr7 (123945125-123945226) | |
| 1094-1195, gnl|monDom2|scaffold_17 (9065349-9065453) | |
| 1094-1195, gnl|oryCun1|scaffold_215262 (12071-12175) | |
| 1094-1195, gnl|panTro1|chr18 (31750827-31750927) | |
| 1094-1195, gnl|rheMac2|chr20 (29131892-29131992) | |
| 1094-1195, gnl|rn3|chr1 (187282575-187282678) | |
| 1094-1195, gnl|tetNig1|chrUn_random (46109866-46109762) | |
| 1198-1428, gnl|bosTau2|chr25 (22926328-22926563) | |
| 1198-1428, gnl|Hg17|chr16 (30958737-30958972) | |
| 1198-1428, gnl|Mm7|chr7 (123945312-123945527) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| fli (0.202881) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| jca (0.11396) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| jca (0.11396) |