Ss1.1-Tes1-TES01D110008.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATGCCTCCATTTAATGGCCAAGTCAGCCCTGCCCAGGTGACGCCCAGGCCCCGAGGGGT CCTCCCTCCTGCCTGGTATCCCCTGAAGAGTCCACCCAAGCCGGTGCCCATCAGCCTCAC TAGCAGCATCCTGGTCCAGTCCCAGCGTCCGGGGCAGCTTCATCTCAGCTCGGTCAGCAG GCTGTTGATGGCACCCAGGAGTTCCCGGAAGTAACCCTCATCCTCGCCCTCGCGGAGCTC CAGGGCCGCCAGAGCCTGGTACTCAGCCTGCAGGCTGACCAGCGTCCTGCTGAGCTGCGG GTCTTGACGGTAGTGGTCCCGGCAGGTGGCCAGGAGGGCGCCCAGCGTCTGCAGCACCTT TTCGCGGGCATCGTGCTCTGGCAGTGCCAGGAGGTGGGCAGTGATCTCGCACCAGCCCTG TTCCCGAAGGCCTGGCAGGAGGTGCACCTGGCGATACTGCTGCAGCTTCTCTGGGGACGT CTCCCGGGTCAGCTCGGCCTCCTCCTCAGCAAACATCTTCTCAGTGACCAGGTCGTAGAG CAGAGTGACCACACGCACGGCCAGCACCTCCGTGCCCTTCTCCTGGACCAGACTCCTCAG GACCTGCAGCCCCCCCAGCTTCAGGAACTGCTGCTGGGCGTACGGGAAGTGTCGTAATAG GGAGCACAGGGCAAACAGGACCTTCTTCTTTGCAGTGAGAGGCTGCTCAGTGGCCAGAAT GACCAGCAATTTCTGCAGGGCTCCCCCCTCCACGGCTTCCACCTGGACCTTTGGGTTGCT GGAAAAGGCAGCTCCCAGCGCAAAGGCCGCGTACTCCTTCACCAGGGGCTCTGTGCTGTT CAGCCCATTGATCACCACTTGAAGGCCACCGAAGGAAAGCAGGTCTTGTGCATTATCCAT CTGATGGACGTAATATTCAAGATCAAAGAGCGCAGCAACCTTTTCCTCCAGGCTGGAGCT CGAACTATTGAACTTGTTGATCAGCCGAACCATGATCTGCATGTCAGTCTCAATGACAAC ATTCAGCTCCTCGAAGTCCTTCTTTAGCTCCTCGATGGGGCGGAAGAGCCGTTTAACCTT GGCCTGCCTTTCCTTGTCTTCCTTGGAATTCTCCCTCTCTGCCCCCTCCTTGAATTTTGC CAGCGCACTCTTGAGGTCCTGAGATGTATAGGTGTTGGTGTTGATGTCCAGCCTTTTGCC TTTTTTCAACCCTTTCAAATTGCTTCGAAACTTGTCCTCATCTTGGAGTTTCACTTCTCT TGCCCCAGTCTGGAGATTCAGCCGCACATGGGATCCTGCAGGAACAGCCTGACCTGGGTG AAGAGCCTGCCACTCATGAGTCGGGTGGAACACCTCCAGGACCTCAGGCTCCAGCTCCTC CTCTGCTGTGCTTCCCTTTCTCGCCGTTTCTTTGGTGCTGCTCTCCTCCGGGTGCGTCAG TGCAAGTTCCGAGTCCTTACGACCGAGGCAGAAGGTGAAGCAGGCGGCCATCAGCAGGCC CAGCAGAATGCCCAGACGAGCCATCCTCAAAAGGATTAGGCCCTGGCAAGGCCTGCGGCT CCCCGCCCGGCAGCCGAGGGGCAGACACAAACCCCACAATTCCAGGCGGCCGCAGCGGCA ACCAGCTCCCCGTGCGCAGACGCGGCGGCCACGGTCAGAACTTGCGCGCGCCCGGCTATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATGCCTCCATTTAATGGCCAAGTCAGCCCTGCCCAGGTGACGCCCAGGCCCCGAGGGGT CCTCCCTCCTGCCTGGTATCCCCTGAAGAGTCCACCCAAGCCGGTGCCCATCAGCCTCAC TAGCAGCATCCTGGTCCAGTCCCAGCGTCCGGGGCAGCTTCATCTCAGCTCGGTCAGCAG GCTGTTGATGGCACCCAGGAGTTCCCGGAAGTAACCCTCATCCTCGCCCTCGCGGAGCTC CAGGGCCGCCAGAGCCTGGTACTCAGCCTGCAGGCTGACCAGCGTCCTGCTGAGCTGCGG GTCTTGACGGTAGTGGTCCCGGCAGGTGGCCAGGAGGGCGCCCAGCGTCTGCAGCACCTT TTCGCGGGCATCGTGCTCTGGCAGTGCCAGGAGGTGGGCAGTGATCTCGCACCAGCCCTG TTCCCGAAGGCCTGGCAGGAGGTGCACCTGGCGATACTGCTGCAGCTTCTCTGGGGACGT CTCCCGGGTCAGCTCGGCCTCCTCCTCAGCAAACATCTTCTCAGTGACCAGGTCGTAGAG CAGAGTGACCACACGCACGGCCAGCACCTCCGTGCCCTTCTCCTGGACCAGACTCCTCAG GACCTGCAGCCCCCCCAGCTTCAGGAACTGCTGCTGGGCGTACGGGAAGTGTCGTAATAG GGAGCACAGGGCAAACAGGACCTTCTTCTTTGCAGTGAGAGGCTGCTCAGTGGCCAGAAT GACCAGCAATTTCTGCAGGGCTCCCCCCTCCACGGCTTCCACCTGGACCTTTGGGTTGCT GGAAAAGGCAGCTCCCAGCGCAAAGGCCGCGTACTCCTTCACCAGGGGCTCTGTGCTGTT CAGCCCATTGATCACCACTTGAAGGCCACCGAAGGAAAGCAGGTCTTGTGCATTATCCAT CTGATGGACGTAATATTCAAGATCAAAGAGCGCAGCAACCTTTTCCTCCAGGCTGGAGCT CGAACTATTGAACTTGTTGATCAGCCGAACCATGATCTGCATGTCAGTCTCAATGACAAC ATTCAGCTCCTCGAAGTCCTTCTTTAGCTCCTCGATGGGGCGGAAGAGCCGTTTAACCTT GGCCTGCCTTTCCTTGTCTTCCTTGGAATTCTCCCTCTCTGCCCCCTCCTTGAATTTTGC CAGCGCACTCTTGAGGTCCTGAGATGTATAGGTGTTGGTGTTGATGTCCAGCCTTTTGCC TTTTTTCAACCCTTTCAAATTGCTTCGAAACTTGTCCTCATCTTGGAGTTTCACTTCTCT TGCCCCAGTCTGGAGATTCAGCCGCACATGGGATCCTGCAGGAACAGCCTGACCTGGGTG AAGAGCCTGCCACTCATGAGTCGGGTGGAACACCTCCAGGACCTCAGGCTCCAGCTCCTC CTCTGCTGTGCTTCCCTTTCTCGCCGTTTCTTTGGTGCTGCTCTCCTCCGGGTGCGTCAG TGCAAGTTCCGAGTCCTTACGACCGAGGCAGAAGGTGAAGCAGGCGGCCATCAGCAGGCC CAGCAGAATGCCCAGACGAGCCATCCTCAAAAGGATTAGGCCCTGGCAAGGCCTGCGGCT CCCCGCCCGGCAGCCGAGGGGCAGACACAAACCCCACAATTCCAGGCGGCCGCAGCGGCA ACCAGCTCCCCGTGCGCAGACGCGGCGGCCACGGTCAGAACTTGCGCGCGCCCGGCTATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1192-1315, gnl|bosTau2|chr7 (36979012-36979135) | |
| 1192-1315, gnl|canFam2|chr11 (29579046-29579274) | |
| 1192-1315, gnl|echTel1|scaffold_259122 (3046-3275) | |
| 1192-1315, gnl|hg17|chr5 (138414457-138414682) | |
| 1192-1315, gnl|Hg17|chr5 (138414525-138414636) | |
| 1192-1315, gnl|loxAfr1|scaffold_166506 (1715-1947) | |
| 1192-1315, gnl|mm7|chr18 (35724678-35724909) | |
| 1192-1315, gnl|Mm7|chr18 (35724740-35724863) | |
| 1192-1315, gnl|monDom2|scaffold_6 (70185842-70185641) | |
| 1192-1315, gnl|oryCun1|scaffold_205797 (116391-116622) | |
| 1192-1315, gnl|panTro1|chr4 (145022409-145022634) | |
| 1192-1315, gnl|rheMac2|chr6 (135461861-135462086) | |
| 1192-1315, gnl|rn3|chr18 (27897996-27898227) | |
| 1552-1680, gnl|bosTau2|chr7 (37149197-37149325) | |
| 1552-1680, gnl|canFam2|chr11 (29705686-29706153) | |
| 1552-1680, gnl|dasNov1|scaffold_24668 (41981-42361) | |
| 1552-1680, gnl|hg17|chr5 (138561723-138562180) | |
| 1552-1680, gnl|Hg17|chr5 (138561856-138561979) | |
| 1552-1680, gnl|loxAfr1|scaffold_34897 (6038-6547) | |
| 1552-1680, gnl|mm7|chr18 (35874743-35875239) | |
| 1552-1680, gnl|Mm7|chr18 (35874891-35875019) | |
| 1552-1680, gnl|oryCun1|scaffold_202093 (68728-69186) | |
| 1552-1680, gnl|panTro1|chr4 (145166779-145167235) | |
| 1552-1680, gnl|rheMac2|chr6 (135605677-135606130) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1192-1315, gnl|bosTau2|chr7 (36979012-36979135) | |
| 1192-1315, gnl|canFam2|chr11 (29579046-29579274) | |
| 1192-1315, gnl|echTel1|scaffold_259122 (3046-3275) | |
| 1192-1315, gnl|hg17|chr5 (138414457-138414682) | |
| 1192-1315, gnl|Hg17|chr5 (138414525-138414636) | |
| 1192-1315, gnl|loxAfr1|scaffold_166506 (1715-1947) | |
| 1192-1315, gnl|mm7|chr18 (35724678-35724909) | |
| 1192-1315, gnl|Mm7|chr18 (35724740-35724863) | |
| 1192-1315, gnl|monDom2|scaffold_6 (70185842-70185641) | |
| 1192-1315, gnl|oryCun1|scaffold_205797 (116391-116622) | |
| 1192-1315, gnl|panTro1|chr4 (145022409-145022634) | |
| 1192-1315, gnl|rheMac2|chr6 (135461861-135462086) | |
| 1192-1315, gnl|rn3|chr18 (27897996-27898227) | |
| 1552-1680, gnl|bosTau2|chr7 (37149197-37149325) | |
| 1552-1680, gnl|canFam2|chr11 (29705686-29706153) | |
| 1552-1680, gnl|dasNov1|scaffold_24668 (41981-42361) | |
| 1552-1680, gnl|hg17|chr5 (138561723-138562180) | |
| 1552-1680, gnl|Hg17|chr5 (138561856-138561979) | |
| 1552-1680, gnl|loxAfr1|scaffold_34897 (6038-6547) | |
| 1552-1680, gnl|mm7|chr18 (35874743-35875239) | |
| 1552-1680, gnl|Mm7|chr18 (35874891-35875019) | |
| 1552-1680, gnl|oryCun1|scaffold_202093 (68728-69186) | |
| 1552-1680, gnl|panTro1|chr4 (145166779-145167235) | |
| 1552-1680, gnl|rheMac2|chr6 (135605677-135606130) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| tes (0.207814) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| med (0.116252) |